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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
41.2
nTPM
HPA Brain:
45.2
nTPM
GTEx:
41.2
nTPM
FANTOM5:
28.2
Scaled Tags Per Million
Pig:
83.7
nTPM
Mouse:
60.9
nTPM
Allen mouse:
0.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 44.4
2019
Male, age 18, unknown
68.5
2828
Female, age 72, unknown
53.2
1870
Female, age 42, unknown
48.1
2411
Female, age 72, unknown
43.3
1830
Male, age 51, unknown
42.0
2586
Male, age 75, left hemisphere
41.8
1833
Male, age 53, unknown
41.6
2666
Male, age 74, left hemisphere
38.3
1827
Male, age 72, unknown
38.1
2219
Male, age 76, both hemispheres
28.9
Dorsal raphe nucleus nTPM: 40.1
1828
Male, age 53, unknown
42.6
2047
Male, age 72, unknown
41.5
2016
Female, age 72, unknown
40.4
2750
Male, age 76, both hemispheres
40.3
2298
Female, age 72, unknown
35.8
Inferior colliculus nTPM: 42.5
1848
Female, age 42, unknown
43.8
1890
Male, age 53, unknown
42.9
2849
Male, age 72, unknown
42.7
2097
Female, age 72, unknown
40.7
Median raphe nucleus nTPM: 41.2
2220
Male, age 76, midline
41.2
Periaquaductal grey, anterior nTPM: 36.6
2502
Female, age 75, unknown
41.7
1947
Male, age 18, unknown
35.1
1795
Male, age 51, unknown
33.0
Periaquaductal grey, dorsal nTPM: 42.2
2850
Male, age 76, both hemispheres
50.7
1840
Male, age 53, unknown
40.6
1831
Male, age 72, unknown
39.8
2464
Female, age 72, unknown
37.7
Periaquaductal grey, lateral nTPM: 38.4
2140
Male, age 76, both hemispheres
43.9
2053
Male, age 18, unknown
38.8
2272
Male, age 74, both hemispheres
32.4
Pretectal area nTPM: 41.6
2407
Male, age 75, both hemispheres
59.3
2316
Male, age 76, right hemisphere
46.9
1817
Female, age 42, unknown
44.2
2667
Female, age 75, unknown
43.2
2273
Male, age 74, both hemispheres
43.1
1815
Male, age 53, unknown
38.9
2007
Male, age 72, unknown
38.5
1816
Male, age 51, unknown
37.2
2224
Female, age 72, unknown
36.2
1944
Female, age 72, unknown
35.5
2825
Male, age 18, unknown
35.1
Red nucleus nTPM: 45.2
1954
Female, age 42, unknown
60.4
1865
Male, age 51, unknown
52.5
1821
Female, age 72, unknown
51.2
1904
Male, age 53, unknown
50.5
2769
Male, age 72, unknown
46.4
2227
Male, age 72, unknown
45.3
2823
Male, age 76, right hemisphere
42.9
2725
Female, age 75, unknown
42.5
2503
Female, age 72, unknown
41.1
2588
Male, age 74, left hemisphere
37.6
2785
Male, age 18, unknown
36.9
2584
Male, age 75, left hemisphere
34.7
Substantia nigra nTPM: 42.3
2409
Female, age 72, unknown
57.5
2241
Male, age 72, unknown
46.2
1851
Male, age 51, unknown
42.9
1916
Female, age 42, unknown
42.1
2665
Male, age 74, both hemispheres
41.5
1889
Female, age 72, unknown
40.8
1941
Male, age 53, unknown
39.3
2699
Male, age 18, unknown
38.9
2583
Male, age 75, right hemisphere
38.8
2590
Female, age 75, unknown
35.0
Superior colliculus nTPM: 40.4
1913
Female, age 42, unknown
46.9
1895
Male, age 76, right hemisphere
43.7
1995
Male, age 72, unknown
42.7
2668
Female, age 75, unknown
42.2
1839
Male, age 51, unknown
40.1
2261
Male, age 18, unknown
39.7
2587
Male, age 74, left hemisphere
38.9
2087
Female, age 72, unknown
38.4
1796
Male, age 53, unknown
36.9
2664
Male, age 75, both hemispheres
34.6
Ventral tegmental area nTPM: 41.5
2021
Male, age 53, unknown
45.3
1942
Male, age 51, unknown
43.7
1915
Female, age 42, unknown
42.0
2410
Female, age 72, unknown
40.1
2223
Female, age 72, unknown
39.8
2218
Male, age 76, both hemispheres
38.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
41.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 41.2
Samples: 139
Max nTPM: 94.6
Min nTPM: 25.5
Std nTPM: 9.1
Median nTPM: 39.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
94.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
67.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
66.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
65.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
58.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
56.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
54.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
54.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
54.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
54.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
54.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
52.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
52.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
52.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
51.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
51.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
51.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
51.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
50.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
50.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
49.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
49.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
48.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
48.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
48.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
48.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
48.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
47.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
47.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
46.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
46.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
46.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
46.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
46.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
46.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
46.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
46.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
45.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
44.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
44.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
44.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
43.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
43.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
43.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
42.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
42.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
42.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
42.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
42.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
42.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
41.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
41.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
41.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
41.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
41.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
41.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
41.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
40.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
40.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
40.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
40.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
40.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
40.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
40.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
40.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
39.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
39.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
39.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
39.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
39.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
39.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
39.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
38.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
38.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
38.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
38.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
38.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
38.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
38.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
37.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
37.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
37.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
37.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
37.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
37.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
37.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
37.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
37.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
37.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
36.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
36.7
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
36.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
36.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
36.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
36.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
35.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
35.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
35.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
35.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
35.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
35.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
35.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
34.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
34.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
34.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
34.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
34.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
34.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
34.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
34.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
34.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
34.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
33.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
33.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
33.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
33.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
33.4
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
33.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
32.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
32.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
32.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
31.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
31.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
31.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
30.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
30.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
29.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
29.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
28.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
28.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
27.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
26.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
25.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 60.9
Samples: 4
Max nTPM: 63.7
Min nTPM: 58.9
Sample A
Male
63.7
Sample B
Male
59.4
Sample C
Female
61.5
Sample D
Female
58.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.