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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38.1
nTPM
HPA Brain:
43.5
nTPM
GTEx:
38.1
nTPM
FANTOM5:
22.3
Scaled Tags Per Million
Pig:
65.8
nTPM
Mouse:
63.9
nTPM
Allen mouse:
1.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA027820
Antibody HPA045837
Glial cells
Not detected
Low
Neuronal cells
Not detected
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 41.8
1911
Female, age 85, right hemisphere
50.9
1855
Male, age 76, left hemisphere
47.4
2148
Female, age 91, left hemisphere
43.6
2529
Female, age 94, left hemisphere
42.3
1898
Male, age 80, left hemisphere
34.9
2621
Female, age 67, right hemisphere
32.0
Dentate gyrus nTPM: 38.2
2010
Male, age 76, both hemispheres
47.3
1927
Female, age 91, both hemispheres
45.7
2531
Female, age 67, both hemispheres
36.4
2246
Female, age 85, both hemispheres
34.9
2530
Female, age 94, left hemisphere
33.7
2528
Male, age 74, both hemispheres
31.3
Entorhinal gyrus nTPM: 36.6
1938
Female, age 85, left hemisphere
44.7
2764
Male, age 80, right hemisphere
40.9
2117
Female, age 91, right hemisphere
37.4
2686
Male, age 75, right hemisphere
36.0
1787
Male, age 76, left hemisphere
34.9
2613
Female, age 94, left hemisphere
25.6
Hippocampus, CA1 nTPM: 41.9
2527
Male, age 74, both hemispheres
45.8
2045
Male, age 76, both hemispheres
44.4
2082
Female, age 91, right hemisphere
40.3
2749
Male, age 80, left hemisphere
40.0
1873
Female, age 85, both hemispheres
39.1
Hippocampus, CA2 nTPM: 38.4
1940
Female, age 85, left hemisphere
47.2
1963
Male, age 80, left hemisphere
44.1
1892
Male, age 76, both hemispheres
37.4
2249
Male, age 74, both hemispheres
36.3
2113
Female, age 91, right hemisphere
33.1
2437
Female, age 94, left hemisphere
32.2
Hippocampus, CA3 nTPM: 43.5
2137
Male, age 80, left hemisphere
48.9
2436
Male, age 74, both hemispheres
48.8
1867
Male, age 76, both hemispheres
47.1
1891
Female, age 85, both hemispheres
44.0
2861
Female, age 67, both hemispheres
40.7
2620
Female, age 94, left hemisphere
31.8
Parahippocampal cortex nTPM: 37.5
1850
Male, age 80, both hemispheres
46.9
2018
Male, age 76, both hemispheres
45.5
1933
Female, age 85, both hemispheres
42.7
2693
Female, age 94, both hemispheres
36.9
2245
Female, age 91, both hemispheres
36.8
2532
Female, age 72, left hemisphere
36.3
2692
Male, age 74, both hemispheres
34.6
2250
Female, age 67, right hemisphere
34.1
1990
Female, age 91, right hemisphere
33.8
2622
Female, age 67, right hemisphere
27.9
Perirhinal gyrus nTPM: 41.1
1847
Female, age 91, left hemisphere
48.8
1841
Female, age 85, right hemisphere
43.8
2521
Female, age 94, right hemisphere
38.8
2848
Male, age 76, right hemisphere
38.3
1794
Male, age 80, right hemisphere
35.8
Subiculum nTPM: 41.6
2042
Male, age 76, both hemispheres
51.7
2729
Female, age 91, right hemisphere
45.1
1901
Male, age 80, both hemispheres
43.5
2438
Female, age 94, left hemisphere
42.8
2619
Male, age 74, both hemispheres
34.4
1977
Female, age 85, both hemispheres
32.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 38.1
Samples: 197
Max nTPM: 155.5
Min nTPM: 23.3
Std nTPM: 10.9
Median nTPM: 36.5
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
155.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
63.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
60.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
58.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
58.2
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
56.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
55.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
54.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
54.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
53.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
51.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
50.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
49.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
48.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
48.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
48.0
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
47.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
47.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
47.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
46.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
46.2
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
46.0
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
45.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
45.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
45.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
45.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
45.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
45.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
44.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
44.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
43.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
43.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
43.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
43.3
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
42.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
42.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
42.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
42.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
42.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
42.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
42.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
42.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
41.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
41.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
41.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
41.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
41.2
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
41.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
41.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
40.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
40.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
40.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
40.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
40.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
40.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
40.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
40.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
40.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
40.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
40.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
40.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
39.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
39.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
39.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
39.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
39.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
39.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
39.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
39.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
39.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
39.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
38.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
38.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
38.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
38.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
38.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
38.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
38.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
38.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
38.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
38.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
38.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
38.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
38.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
38.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
37.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
37.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
37.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
37.5
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
37.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
37.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
37.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
37.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
37.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
37.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
37.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
37.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
37.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
36.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
36.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
36.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
36.4
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
36.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
36.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
36.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
36.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
36.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
36.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
36.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
35.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
35.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
35.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
35.4
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
35.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
35.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
35.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
35.3
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
35.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
35.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
35.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
35.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
35.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
34.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
34.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
34.6
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
34.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
34.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
34.5
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
34.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
34.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
34.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
34.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
34.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
34.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
34.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
34.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
33.8
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
33.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
33.7
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
33.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
33.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
33.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
33.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
33.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
33.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
33.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
32.9
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
32.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
32.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
32.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
32.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
32.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
32.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
32.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
32.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
32.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
31.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
31.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
31.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
31.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
31.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
31.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
31.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
31.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
31.3
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
31.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
31.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
30.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
30.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
30.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
30.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
30.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
30.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
29.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
29.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
29.4
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
29.0
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
28.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
28.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
28.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
28.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
28.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
28.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
28.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
28.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
27.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
27.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
26.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
26.8
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
26.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
26.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
26.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
25.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
25.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
24.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
23.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
63.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 59.4
Samples: 4
Max nTPM: 63.1
Min nTPM: 54.4
Sample A
Male
59.1
Sample B
Male
61.0
Sample C
Female
63.1
Sample D
Female
54.4
Hippocampal formation nTPM: 63.9
Samples: 4
Max nTPM: 72.2
Min nTPM: 57.6
Sample A
Male
72.2
Sample B
Male
63.2
Sample C
Female
57.6
Sample D
Female
62.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.