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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MSL1 is not prognostic in Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
31.0
Number of samples
283
Samples
Sample
Description
TPM
TCGA-EK-A2RM-01A
40 years, female, white, stage:Stage IB, alive, 50 days
149.3
TCGA-C5-A1MI-01A
50 years, female, white, stage:Stage IB, dead, 1083 days
85.2
TCGA-VS-A9UJ-01A
55 years, female, stage:Stage IIB, dead, 52 days
76.1
TCGA-C5-A7CJ-01A
42 years, female, white, stage:Stage IIA, dead, 3097 days
73.4
TCGA-VS-A9V4-01A
63 years, female, white, stage:Stage IVA, dead, 132 days
73.1
TCGA-VS-A9UP-01A
43 years, female, stage:Stage IIA, alive, 1444 days
71.5
TCGA-EK-A2PL-01A
36 years, female, white, stage:Stage IIIB, alive, 13 days
70.5
TCGA-C5-A1MP-01A
34 years, female, black or african american, stage:Stage IB, alive, 109 days
65.9
TCGA-4J-AA1J-01A
31 years, female, white, stage:Stage IB, alive, 542 days
65.5
TCGA-EA-A3HS-01A
35 years, female, white, stage:Stage IB, alive, 959 days
63.1
TCGA-C5-A8XJ-01A
74 years, female, white, stage:Stage IB, alive, 4467 days
56.3
TCGA-VS-A9U6-01A
52 years, female, white, stage:Stage IVB, alive, 1320 days
54.8
TCGA-EA-A3HQ-01A
60 years, female, white, stage:Stage II, alive, 1136 days
54.8
TCGA-EX-A69M-01A
62 years, female, white, stage:Stage IB, dead, 253 days
54.7
TCGA-EK-A3GJ-01A
51 years, female, native hawaiian or other pacific islander, stage:Stage IB, alive, 3 days
54.2
TCGA-FU-A2QG-01A
29 years, female, white, stage:Stage IB, alive, 579 days
53.8
TCGA-ZJ-AAXA-01A
64 years, female, white, stage:Stage IB, alive, 43 days
53.6
TCGA-DS-A1OC-01A
47 years, female, white, stage:Stage IB, alive, 376 days
53.4
TCGA-MU-A51Y-01A
27 years, female, white, stage:Stage IIA, alive, 854 days
53.2
TCGA-C5-A8YT-01A
36 years, female, white, stage:Stage IB, dead, 633 days
52.6
TCGA-MY-A5BD-01A
62 years, female, white, stage:Stage IIB, alive, 1667 days
51.0
TCGA-VS-A9V3-01A
62 years, female, white, stage:Stage IVB, alive, 540 days
50.6
TCGA-VS-A952-01A
66 years, female, white, stage:Stage IB, alive, 1778 days
48.3
TCGA-C5-A1MJ-01A
61 years, female, white, stage:Stage IB, dead, 14 days
47.7
TCGA-VS-A9UR-01A
53 years, female, white, stage:Stage IIA, alive, 793 days
47.7
TCGA-IR-A3L7-01A
37 years, female, white, stage:Stage IB, alive, 4483 days
46.0
TCGA-XS-A8TJ-01A
41 years, female, black or african american, stage:Stage IB, alive, 890 days
45.6
TCGA-LP-A4AU-01A
35 years, female, asian, stage:Stage IIIB, alive, 343 days
45.4
TCGA-Q1-A6DW-01A
44 years, female, white, stage:Stage I, alive, 534 days
44.9
TCGA-C5-A2LS-01A
37 years, female, white, stage:Stage IB, alive, 1345 days
44.9
TCGA-PN-A8MA-01A
43 years, female, black or african american, stage:Stage IIB, alive, 90 days
43.6
TCGA-Q1-A73Q-01A
46 years, female, white, stage:Stage I, alive, 284 days
43.6
TCGA-VS-A8Q8-01A
26 years, female, white, stage:Stage IB, dead, 978 days
43.6
TCGA-VS-A9UQ-01A
32 years, female, stage:Stage IB, alive, 1263 days
43.6
TCGA-DS-A0VK-01A
45 years, female, white, stage:Stage IB, dead, 1118 days
43.4
TCGA-JW-A5VI-01A
45 years, female, american indian or alaska native, stage:Stage IIB, alive, 747 days
43.1
TCGA-MA-AA43-01A
48 years, female, white, stage:Stage IIIB, alive, 346 days
43.0
TCGA-EA-A5ZE-01A
54 years, female, asian, stage:Stage IB, alive, 829 days
43.0
TCGA-LP-A4AW-01A
52 years, female, asian, stage:Stage IA, alive, 27 days
42.5
TCGA-Q1-A73O-01A
37 years, female, stage:Stage IB, alive, 428 days
42.3
TCGA-EK-A2IR-01A
48 years, female, white, stage:Stage IB, alive, 3442 days
42.0
TCGA-C5-A3HF-01A
24 years, female, white, stage:Stage IB, dead, 543 days
41.7
TCGA-EA-A1QT-01A
47 years, female, white, stage:Stage IB, alive, 1243 days
41.5
TCGA-DS-A7WF-01A
41 years, female, stage:Stage IB, dead, 492 days
41.4
TCGA-DS-A0VL-01A
25 years, female, white, stage:Stage IB, dead, 1692 days
41.4
TCGA-EA-A3HU-01A
43 years, female, white, stage:Stage II, alive, 1013 days
41.3
TCGA-EK-A2RA-01A
74 years, female, stage:Stage IIA, alive, 1246 days
41.3
TCGA-FU-A3TX-01A
78 years, female, stage:Stage IB, alive, 45 days
41.2
TCGA-Q1-A73R-01A
45 years, female, white, stage:Stage I, alive, 567 days
41.0
TCGA-C5-A8YQ-01A
79 years, female, white, stage:Stage IB, dead, 715 days
40.8
TCGA-HM-A3JK-01A
64 years, female, white, stage:Stage IIA, alive, 632 days
40.6
TCGA-VS-A9V1-01A
46 years, female, white, stage:Stage IVB, dead, 157 days
40.4
TCGA-2W-A8YY-01A
51 years, female, white, stage:Stage IB, alive, 533 days
40.0
TCGA-EX-A1H5-01A
58 years, female, black or african american, stage:Stage IIB, alive, 619 days
40.0
TCGA-C5-A2M2-01A
56 years, female, white, stage:Stage IB, dead, 1011 days
39.9
TCGA-VS-A94Z-01A
38 years, female, white, stage:Stage IIB, alive, 1015 days
39.8
TCGA-IR-A3LF-01A
64 years, female, white, stage:Stage IB, alive, 2949 days
39.7
TCGA-Q1-A6DV-01A
36 years, female, asian, stage:Stage IB, alive, 491 days
39.7
TCGA-C5-A8YR-01A
56 years, female, white, stage:Stage IB, dead, 837 days
39.6
TCGA-VS-A8EC-01A
55 years, female, white, stage:Stage IIIB, alive, 1415 days
39.4
TCGA-C5-A8ZZ-01A
41 years, female, white, stage:Stage IIB, alive, 636 days
39.2
TCGA-ZJ-AAX4-01A
85 years, female, white, stage:Stage II, alive, 21 days
38.8
TCGA-FU-A57G-01A
49 years, female, white, stage:Stage IB, alive, 1078 days
38.6
TCGA-FU-A3HZ-01A
64 years, female, white, stage:Stage IIA, alive, 1103 days
38.3
TCGA-EA-A1QS-01A
46 years, female, white, stage:Stage IB, alive, 1203 days
38.1
TCGA-EA-A6QX-01A
49 years, female, asian, stage:Stage IIIB, alive, 730 days
37.9
TCGA-EK-A3GK-01A
33 years, female, white, stage:Stage IB, alive, 15 days
37.8
TCGA-C5-A1BJ-01A
34 years, female, white, stage:Stage IIB, alive, 4385 days
37.6
TCGA-HM-A6W2-01A
34 years, female, black or african american, stage:Stage IVB, alive, 287 days
37.5
TCGA-EA-A411-01A
50 years, female, white, stage:Stage IB, alive, 747 days
37.5
TCGA-VS-A9UM-01A
39 years, female, black or african american, stage:Stage IVB, dead, 829 days
37.5
TCGA-VS-A9UY-01A
29 years, female, stage:Stage IVB, dead, 555 days
37.3
TCGA-C5-A1BL-01A
32 years, female, white, stage:Stage IB, alive, 5271 days
37.3
TCGA-EA-A5ZF-01A
56 years, female, asian, stage:Stage IB, alive, 828 days
37.3
TCGA-IR-A3LC-01A
40 years, female, white, stage:Stage IB, alive, 3935 days
37.1
TCGA-EA-A97N-01A
38 years, female, white, stage:Stage IB, alive, 11 days
37.1
TCGA-DS-A1OA-01A
77 years, female, asian, stage:Stage IB, dead, 879 days
36.9
TCGA-JW-A5VL-01A
37 years, female, american indian or alaska native, stage:Stage IB, alive, 474 days
36.7
TCGA-VS-AA62-01A
51 years, female, white, stage:Stage IIB, dead, 469 days
36.6
TCGA-VS-A957-01A
64 years, female, white, stage:Stage IB, alive, 1688 days
36.4
TCGA-JW-A69B-01A
44 years, female, white, stage:Stage IB, alive, 863 days
36.3
TCGA-HM-A4S6-01A
51 years, female, white, stage:Stage IIIB, alive, 454 days
36.2
TCGA-WL-A834-01A
57 years, female, white, stage:'--, alive, 791 days
36.0
TCGA-VS-A954-01A
67 years, female, stage:Stage IIIB, alive, 1714 days
35.9
TCGA-MU-A8JM-01A
46 years, female, white, stage:Stage IB, alive, 607 days
35.8
TCGA-C5-A907-01A
47 years, female, white, stage:Stage IB, alive, 448 days
35.6
TCGA-VS-A9V2-01A
29 years, female, white, stage:Stage IB, alive, 555 days
35.4
TCGA-JW-A5VJ-01A
56 years, female, american indian or alaska native, stage:Stage IIB, alive, 652 days
35.2
TCGA-DG-A2KL-01A
53 years, female, stage:Stage IIA, alive, 1367 days
35.2
TCGA-VS-A94W-01A
39 years, female, white, stage:Stage IIB, alive, 1243 days
35.1
TCGA-VS-A8EG-01A
36 years, female, stage:Stage IB, alive, 1386 days
34.9
TCGA-FU-A23L-01A
60 years, female, white, stage:Stage IIA, alive, 725 days
34.7
TCGA-C5-A1ML-01A
49 years, female, white, stage:Stage IB, dead, 636 days
34.6
TCGA-BI-A20A-01A
49 years, female, white, stage:Stage IB, alive, 720 days
34.4
TCGA-VS-A9UO-01A
43 years, female, white, stage:Stage IIB, alive, 1456 days
34.3
TCGA-C5-A8XI-01A
69 years, female, black or african american, stage:Stage IB, alive, 254 days
34.2
TCGA-VS-A8QC-01A
51 years, female, white, stage:Stage IVA, dead, 350 days
34.1
TCGA-MY-A5BF-01A
68 years, female, white, stage:Stage IIA, alive, 634 days
34.1
TCGA-C5-A7CG-01A
55 years, female, white, stage:Stage IB, alive, 6408 days
34.0
TCGA-C5-A1BM-01A
78 years, female, black or african american, stage:Stage IB, dead, 2520 days
33.9
TCGA-VS-A9UC-01A
32 years, female, stage:Stage IIB, alive, 825 days
33.8
TCGA-HG-A2PA-01A
38 years, female, white, stage:Stage IB, dead, 773 days
33.8
TCGA-C5-A7XC-01A
26 years, female, white, stage:Stage IB, alive, 1551 days
33.8
TCGA-FU-A770-01A
33 years, female, white, stage:Stage IIIB, alive, 34 days
33.8
TCGA-C5-A7CK-01A
58 years, female, white, stage:Stage IVA, dead, 4086 days
33.7
TCGA-MA-AA41-01A
33 years, female, white, stage:Stage IIB, alive, 279 days
33.7
TCGA-VS-A9UZ-01A
61 years, female, white, stage:Stage IB, alive, 2044 days
33.6
TCGA-JX-A5QV-01A
37 years, female, white, stage:Stage IB, alive, 636 days
33.4
TCGA-C5-A1M6-01A
55 years, female, white, stage:Stage IIB, dead, 955 days
33.2
TCGA-VS-A8EK-01A
65 years, female, white, stage:Stage IVA, dead, 829 days
33.1
TCGA-VS-A94Y-01A
47 years, female, white, stage:Stage IIB, dead, 144 days
33.0
TCGA-C5-A1MK-01A
79 years, female, white, stage:Stage IIIB, dead, 74 days
33.0
TCGA-EA-A3HR-01A
57 years, female, white, stage:Stage II, alive, 940 days
33.0
TCGA-EK-A2R8-01A
48 years, female, white, stage:Stage IB, alive, 44 days
33.0
TCGA-FU-A3WB-01A
43 years, female, white, stage:Stage IIA, alive, 491 days
32.9
TCGA-VS-A9UV-01A
74 years, female, stage:Stage IVA, dead, 104 days
32.9
TCGA-VS-A94X-01A
40 years, female, black or african american, stage:Stage IIB, dead, 506 days
32.5
TCGA-C5-A1M7-01A
37 years, female, white, stage:Stage IB, alive, 1409 days
32.5
TCGA-MU-A5YI-01A
60 years, female, black or african american, stage:Stage IA, alive, 1053 days
32.5
TCGA-Q1-A73P-01A
45 years, female, white, stage:Stage IB, alive, 483 days
32.4
TCGA-EA-A410-01A
51 years, female, white, stage:Stage IIA, alive, 803 days
32.2
TCGA-FU-A3NI-01A
45 years, female, white, stage:Stage IB, dead, 638 days
32.2
TCGA-FU-A3HY-01A
47 years, female, white, stage:Stage IB, alive, 954 days
32.2
TCGA-DS-A1OB-01A
45 years, female, white, stage:Stage IB, dead, 861 days
32.1
TCGA-VS-A9UU-01A
42 years, female, stage:Stage IIB, alive, 442 days
32.1
TCGA-LP-A4AX-01A
45 years, female, asian, stage:Stage IB, alive, 380 days
31.9
TCGA-FU-A3YQ-01A
35 years, female, white, stage:Stage IB, alive, 861 days
31.6
TCGA-VS-A958-01A
46 years, female, white, stage:Stage IIB, alive, 1525 days
31.5
TCGA-DS-A3LQ-01A
46 years, female, stage:Stage IIIB, alive, 699 days
31.5
TCGA-DS-A1O9-01A
75 years, female, white, stage:Stage IVA, dead, 266 days
31.2
TCGA-MA-AA3Y-01A
48 years, female, white, stage:Stage IB, alive, 542 days
31.2
TCGA-EA-A439-01A
50 years, female, asian, stage:Stage IIA, alive, 965 days
31.2
TCGA-UC-A7PF-01A
44 years, female, stage:Stage IB, dead, 2859 days
30.8
TCGA-EX-A449-01A
42 years, female, white, stage:Stage IVB, alive, 447 days
30.8
TCGA-FU-A5XV-01A
32 years, female, white, stage:Stage IIIB, alive, 321 days
30.7
TCGA-VS-A9V0-01A
58 years, female, stage:Stage IB, alive, 573 days
30.7
TCGA-EK-A2R9-01A
58 years, female, white, stage:Stage IB, alive, 4 days
30.6
TCGA-EX-A8YF-01A
44 years, female, white, stage:Stage IB, alive, 473 days
30.4
TCGA-EX-A69L-01A
41 years, female, asian, stage:Stage IB, alive, 602 days
30.3
TCGA-EK-A2GZ-01A
64 years, female, black or african american, stage:Stage IIIB, alive, 383 days
30.3
TCGA-GH-A9DA-01A
27 years, female, white, stage:Stage IB, alive, 540 days
30.3
TCGA-BI-A0VR-01A
53 years, female, white, stage:Stage IIIB, alive, 1505 days
30.3
TCGA-IR-A3LA-01A
60 years, female, white, stage:Stage IB, alive, 4172 days
30.2
TCGA-EA-A44S-01A
31 years, female, white, stage:Stage IIIB, alive, 369 days
30.1
TCGA-BI-A0VS-01A
48 years, female, white, stage:Stage IB, alive, 1735 days
30.1
TCGA-EA-A5ZD-01A
40 years, female, asian, stage:Stage IB, alive, 830 days
29.9
TCGA-VS-A9UB-01A
54 years, female, stage:Stage IIB, alive, 911 days
29.8
TCGA-C5-A7CL-01A
48 years, female, white, stage:Stage IIIB, dead, 471 days
29.8
TCGA-C5-A2M1-01A
37 years, female, white, stage:Stage IB, alive, 1169 days
29.8
TCGA-C5-A1MN-01A
42 years, female, white, stage:Stage IIIB, dead, 1245 days
29.5
TCGA-C5-A3HL-01A
76 years, female, white, stage:Stage IB, alive, 621 days
29.4
TCGA-C5-A905-01A
37 years, female, black or african american, stage:Stage IB, alive, 4879 days
29.3
TCGA-EK-A2IP-01A
28 years, female, white, stage:Stage IB, alive, 202 days
29.3
TCGA-EA-A3QE-01A
45 years, female, white, stage:Stage IB, alive, 761 days
29.3
TCGA-C5-A7UH-01A
55 years, female, white, stage:Stage IIIB, alive, 3988 days
29.1
TCGA-JX-A3Q8-01A
40 years, female, asian, stage:Stage IB, alive, 1357 days
28.9
TCGA-C5-A7UC-01A
48 years, female, white, stage:Stage IB, dead, 523 days
28.9
TCGA-UC-A7PG-01A
44 years, female, white, stage:Stage IIIB, dead, 370 days
28.9
TCGA-DR-A0ZL-01A
53 years, female, asian, stage:Stage IB, alive, 2669 days
28.9
TCGA-C5-A7X3-01A
70 years, female, white, stage:Stage IIIB, dead, 284 days
28.8
TCGA-IR-A3LH-01A
49 years, female, black or african american, stage:Stage IIA, alive, 2394 days
28.7
TCGA-DG-A2KK-01A
51 years, female, stage:Stage IIIB, alive, 2496 days
28.7
TCGA-LP-A5U3-01A
40 years, female, asian, stage:Stage IB, alive, 25 days
28.5
TCGA-VS-A8Q9-01A
79 years, female, white, stage:Stage IB, alive, 1630 days
28.4
TCGA-EK-A2RL-01A
32 years, female, black or african american, stage:Stage IB, dead, 1453 days
28.3
TCGA-LP-A7HU-01A
53 years, female, asian, stage:Stage II, alive, 406 days
28.3
TCGA-C5-A7CO-01A
68 years, female, white, stage:Stage IB, alive, 4482 days
28.1
TCGA-ZX-AA5X-01A
64 years, female, white, stage:Stage IIIB, alive, 119 days
28.0
TCGA-VS-A9UL-01A
79 years, female, white, stage:Stage IIIB, dead, 442 days
27.9
TCGA-IR-A3LK-01A
69 years, female, white, stage:Stage IB, dead, 908 days
27.9
TCGA-VS-A950-01A
42 years, female, stage:Stage IIIA, alive, 1221 days
27.5
TCGA-C5-A1M5-01A
53 years, female, white, stage:Stage IB, dead, 2052 days
27.5
TCGA-C5-A1M9-01A
46 years, female, white, stage:Stage IB, dead, 1065 days
27.3
TCGA-HM-A3JJ-01A
40 years, female, black or african american, stage:Stage IB, dead, 659 days
27.2
TCGA-EA-A5FO-01A
59 years, female, white, stage:Stage IB, alive, 815 days
27.1
TCGA-IR-A3LB-01A
53 years, female, white, stage:Stage IB, dead, 2032 days
27.1
TCGA-C5-A1MH-01A
71 years, female, white, stage:Stage IIIB, dead, 1186 days
27.0
TCGA-EX-A3L1-01A
32 years, female, white, stage:Stage IIA, alive, 463 days
26.9
TCGA-UC-A7PI-01A
44 years, female, white, stage:Stage IB, alive, 2114 days
26.8
TCGA-VS-A9UT-01A
72 years, female, asian, stage:Stage IB, alive, 482 days
26.4
TCGA-Q1-A5R1-01A
32 years, female, white, stage:Stage IB, alive, 474 days
26.4
TCGA-VS-A8EH-01A
56 years, female, stage:Stage IIIB, alive, 986 days
26.3
TCGA-DG-A2KH-01A
25 years, female, stage:Stage IB, alive, 34 days
26.2
TCGA-VS-A8QA-01A
44 years, female, stage:Stage IB, alive, 1099 days
26.2
TCGA-C5-A1M8-01A
43 years, female, white, stage:Stage IB, alive, 919 days
26.0
TCGA-EA-A3HT-01A
68 years, female, white, stage:Stage IB, alive, 954 days
25.9
TCGA-DS-A1OD-01A
49 years, female, white, stage:Stage IB, alive, 3874 days
25.7
TCGA-VS-A9V5-01A
50 years, female, white, stage:Stage IIB, dead, 494 days
25.5
TCGA-VS-A8QM-01A
47 years, female, stage:Stage IVB, dead, 951 days
25.2
TCGA-EK-A2RJ-01A
51 years, female, white, stage:Stage IB, alive, 53 days
25.1
TCGA-MA-AA3Z-01A
43 years, female, white, stage:Stage IB, alive, 595 days
25.0
TCGA-EK-A2RE-01A
26 years, female, white, stage:Stage IIA, alive, 57 days
25.0
TCGA-VS-A959-01A
76 years, female, stage:Stage IIB, alive, 1561 days
25.0
TCGA-VS-A9UI-01A
76 years, female, white, stage:Stage IIB, dead, 1372 days
24.7
TCGA-VS-A8QH-01A
76 years, female, white, stage:Stage IB, dead, 1210 days
24.5
TCGA-ZJ-A8QQ-01A
24 years, female, white, stage:Stage IIB, alive, 2056 days
24.5
TCGA-C5-A902-01A
35 years, female, black or african american, stage:Stage IB, alive, 149 days
24.3
TCGA-VS-A953-01A
63 years, female, stage:Stage IVA, dead, 477 days
24.0
TCGA-EK-A2RC-01A
33 years, female, stage:Stage IB, alive, 129 days
23.8
TCGA-Q1-A73S-01A
33 years, female, white, stage:Stage IB, alive, 688 days
23.7
TCGA-JX-A3Q0-01A
63 years, female, black or african american, stage:Stage III, alive, 6375 days
23.7
TCGA-ZJ-A8QR-01A
38 years, female, native hawaiian or other pacific islander, stage:Stage I, dead, 582 days
23.6
TCGA-C5-A0TN-01A
21 years, female, black or african american, stage:Stage IB, dead, 348 days
23.6
TCGA-FU-A3TQ-01A
55 years, female, white, stage:Stage IIIB, alive, 795 days
23.3
TCGA-MY-A913-01A
28 years, female, black or african american, stage:Stage IIA, alive, 524 days
23.3
TCGA-EK-A3GN-01A
47 years, female, white, stage:Stage IIIB, alive, 27 days
23.1
TCGA-DS-A5RQ-01A
80 years, female, white, stage:Stage IB, alive, 512 days
22.4
TCGA-C5-A901-01A
44 years, female, white, stage:'--, alive, 518 days
22.3
TCGA-FU-A40J-01A
38 years, female, white, stage:Stage IIIB, alive, 426 days
22.0
TCGA-C5-A8XH-01A
39 years, female, white, stage:Stage IB, dead, 1394 days
21.9
TCGA-JW-A5VG-01A
35 years, female, american indian or alaska native, stage:Stage IIA, alive, 834 days
21.8
TCGA-EK-A2RO-01A
59 years, female, american indian or alaska native, stage:Stage IIB, alive, 2 days
21.6
TCGA-C5-A8XK-01A
30 years, female, black or african american, stage:'--, alive, 3039 days
21.5
TCGA-EK-A2PI-01A
44 years, female, white, stage:Stage IIIB, alive, 586 days
20.9
TCGA-DS-A0VM-01A
51 years, female, white, stage:Stage IB, alive, 3589 days
20.9
TCGA-RA-A741-01A
34 years, female, white, stage:Stage IIB, alive, 444 days
20.8
TCGA-EK-A2H0-01A
24 years, female, white, stage:Stage IIB, alive, 1847 days
20.8
TCGA-EK-A2RB-01A
48 years, female, white, stage:Stage IVB, alive, 9 days
20.7
TCGA-VS-A9UH-01A
53 years, female, black or african american, stage:Stage IVA, alive, 1427 days
20.6
TCGA-JW-AAVH-01A
46 years, female, white, stage:Stage IB, alive, 552 days
20.4
TCGA-VS-A9U7-01A
30 years, female, white, stage:Stage IB, alive, 1472 days
20.4
TCGA-C5-A3HE-01A
44 years, female, white, stage:Stage IB, alive, 548 days
20.1
TCGA-DG-A2KM-01A
46 years, female, stage:Stage IB, alive, 1946 days
20.1
TCGA-VS-A8EB-01A
41 years, female, white, stage:Stage IIIB, dead, 305 days
20.1
TCGA-VS-A8QF-01A
42 years, female, white, stage:Stage IIB, alive, 1800 days
20.0
TCGA-C5-A7CH-01A
43 years, female, white, stage:Stage IIB, alive, 4694 days
20.0
TCGA-VS-A9U5-01A
57 years, female, white, stage:Stage IIB, alive, 1535 days
19.8
TCGA-ZJ-AAXU-01A
51 years, female, white, stage:Stage IIB, alive, 5 days
19.3
TCGA-EK-A2PK-01A
43 years, female, white, stage:Stage IB, alive, 12 days
18.9
TCGA-UC-A7PD-01A
21 years, female, american indian or alaska native, stage:Stage IB, dead, 355 days
18.8
TCGA-C5-A7X8-01A
35 years, female, white, stage:Stage IB, alive, 83 days
18.8
TCGA-MA-AA3X-01A
50 years, female, black or african american, stage:Stage IIIB, alive, 617 days
18.7
TCGA-EA-A3Y4-01A
40 years, female, white, stage:Stage IB, alive, 1122 days
18.5
TCGA-EA-A50E-01A
45 years, female, asian, stage:Stage IVA, dead, 227 days
18.4
TCGA-EA-A4BA-01A
49 years, female, white, stage:Stage IB, alive, 755 days
18.3
TCGA-VS-A8EL-01A
38 years, female, black or african american, stage:Stage IIB, alive, 1992 days
18.2
TCGA-DR-A0ZM-01A
61 years, female, white, stage:Stage IIIB, alive, 1791 days
18.1
TCGA-EK-A2PM-01A
81 years, female, white, stage:Stage IIB, alive, 18 days
17.7
TCGA-EK-A2PG-01A
88 years, female, black or african american, stage:'--, alive, 46 days
17.4
TCGA-JW-A5VH-01A
53 years, female, american indian or alaska native, stage:Stage IVB, dead, 100 days
17.3
TCGA-VS-A9UD-01A
73 years, female, white, stage:Stage IIIA, alive, 739 days
17.3
TCGA-C5-A7UE-01A
45 years, female, white, stage:Stage IB, alive, 4738 days
17.1
TCGA-MA-AA42-01A
75 years, female, white, stage:Stage IIB, alive, 259 days
17.1
TCGA-C5-A2LZ-01A
65 years, female, white, stage:Stage IIIB, dead, 3046 days
17.0
TCGA-C5-A2LY-01A
30 years, female, white, stage:Stage IB, alive, 2383 days
16.9
TCGA-VS-A8EJ-01A
60 years, female, white, stage:Stage IIB, dead, 607 days
16.8
TCGA-EA-A3QD-01A
59 years, female, white, stage:Stage IIIB, alive, 397 days
16.7
TCGA-EK-A2RN-01A
45 years, female, white, stage:Stage IB, alive, 71 days
16.5
TCGA-MY-A5BE-01A
42 years, female, black or african american, stage:Stage IB, alive, 1066 days
16.5
TCGA-C5-A7X5-01A
72 years, female, black or african american, stage:Stage IVB, dead, 414 days
16.2
TCGA-EK-A2H1-01A
20 years, female, white, stage:Stage IB, alive, 799 days
15.9
TCGA-C5-A2LT-01A
38 years, female, white, stage:Stage IB, alive, 2226 days
15.4
TCGA-DS-A0VN-01A
47 years, female, white, stage:Stage IB, alive, 3609 days
15.4
TCGA-EA-A5O9-01A
39 years, female, white, stage:Stage IB, alive, 788 days
15.3
TCGA-R2-A69V-01A
42 years, female, white, stage:Stage IB, alive, 596 days
14.5
TCGA-LP-A5U2-01A
30 years, female, asian, stage:Stage IIIB, alive, 9 days
14.4
TCGA-EK-A2R7-01A
45 years, female, white, stage:Stage IB, alive, 27 days
14.3
TCGA-DS-A7WH-01A
34 years, female, white, stage:Stage IB, alive, 533 days
14.2
TCGA-JX-A3PZ-01A
25 years, female, white, stage:Stage IB, dead, 642 days
14.0
TCGA-C5-A7UI-01A
42 years, female, black or african american, stage:Stage IB, dead, 2888 days
13.7
TCGA-C5-A2LX-01A
54 years, female, white, stage:Stage IB, alive, 2526 days
13.5
TCGA-EA-A78R-01A
54 years, female, asian, stage:Stage IB, alive, 410 days
13.4
TCGA-DS-A7WI-01A
43 years, female, white, stage:Stage IIA, dead, 252 days
13.0
TCGA-FU-A23K-01A
28 years, female, white, stage:Stage IIIB, alive, 372 days
12.6
TCGA-EA-A556-01A
38 years, female, white, stage:Stage IB, alive, 453 days
12.5
TCGA-MA-AA3W-01A
54 years, female, white, stage:Stage IB, alive, 685 days
12.4
TCGA-Q1-A5R2-01A
64 years, female, white, stage:'--, alive, 499 days
12.1
TCGA-IR-A3LI-01A
48 years, female, white, stage:Stage IVB, alive, 2493 days
11.7
TCGA-VS-A8EI-01A
38 years, female, white, stage:Stage IIB, alive, 729 days
11.5
TCGA-IR-A3LL-01A
60 years, female, white, stage:Stage IB, alive, 1106 days
11.2
TCGA-EA-A43B-01A
43 years, female, white, stage:Stage IB, alive, 791 days
9.7
TCGA-C5-A1MQ-01A
35 years, female, white, stage:Stage IIA, alive, 1031 days
9.4
TCGA-JW-A5VK-01A
43 years, female, black or african american, stage:Stage IB, alive, 623 days
8.5
TCGA-C5-A7CM-01A
35 years, female, white, stage:Stage IB, alive, 619 days
8.3
TCGA-C5-A1ME-01A
40 years, female, white, stage:Stage IB, alive, 1756 days
8.0
TCGA-JW-A852-01A
42 years, female, white, stage:Stage IIB, dead, 252 days
7.9
TCGA-EK-A2RK-01A
67 years, female, white, stage:Stage IA, alive, 13 days
7.1
TCGA-Q1-A5R3-01A
56 years, female, white, stage:'--, alive, 485 days
6.5
TCGA-DG-A2KJ-01A
50 years, female, stage:Stage IIIB, alive, 2893 days
5.8
TCGA-Q1-A6DT-01A
55 years, female, white, stage:Stage I, dead, 275 days
5.3
TCGA-FU-A3EO-01A
55 years, female, white, stage:Stage IIB, alive, 490 days
4.2
TCGA-C5-A1MF-01A
49 years, female, white, stage:Stage IB, alive, 1617 days
3.8
TCGA-C5-A2LV-01A
36 years, female, black or african american, stage:Stage IB, alive, 2234 days
3.5
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CERVICAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
