MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.3 nTPM
HPA Brain:6.2 nTPM
GTEx:1.3 nTPM
FANTOM5:0.5 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:8.6 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 6.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.2
2219 Male, age 76, both hemispheres 7.0
2586 Male, age 75, left hemisphere 4.0
1870 Female, age 42, unknown 3.3
2828 Female, age 72, unknown 3.2
1827 Male, age 72, unknown 3.0
1833 Male, age 53, unknown 2.9
2411 Female, age 72, unknown 2.8
2666 Male, age 74, left hemisphere 2.3
1830 Male, age 51, unknown 2.1
2019 Male, age 18, unknown 1.8
Dorsal raphe nucleus
nTPM: 2.8
2298 Female, age 72, unknown 4.1
2047 Male, age 72, unknown 3.5
2750 Male, age 76, both hemispheres 3.0
1828 Male, age 53, unknown 1.7
2016 Female, age 72, unknown 1.7
Inferior colliculus
nTPM: 3.8
1890 Male, age 53, unknown 4.3
2097 Female, age 72, unknown 4.2
2849 Male, age 72, unknown 3.3
1848 Female, age 42, unknown 3.2
Median raphe nucleus
nTPM: 3.8
2220 Male, age 76, midline 3.8
Periaquaductal grey, anterior
nTPM: 3.9
2502 Female, age 75, unknown 5.1
1795 Male, age 51, unknown 4.5
1947 Male, age 18, unknown 2.2
Periaquaductal grey, dorsal
nTPM: 4.4
1831 Male, age 72, unknown 5.8
1840 Male, age 53, unknown 5.7
2464 Female, age 72, unknown 3.3
2850 Male, age 76, both hemispheres 2.8
Periaquaductal grey, lateral
nTPM: 3.7
2053 Male, age 18, unknown 6.1
2272 Male, age 74, both hemispheres 2.6
2140 Male, age 76, both hemispheres 2.4
Pretectal area
nTPM: 6.2
1944 Female, age 72, unknown 14.7
1816 Male, age 51, unknown 14.5
1815 Male, age 53, unknown 7.1
2007 Male, age 72, unknown 5.7
1817 Female, age 42, unknown 4.6
2667 Female, age 75, unknown 4.4
2224 Female, age 72, unknown 3.9
2825 Male, age 18, unknown 3.9
2407 Male, age 75, both hemispheres 3.8
2273 Male, age 74, both hemispheres 3.2
2316 Male, age 76, right hemisphere 2.1
Red nucleus
nTPM: 2.0
2584 Male, age 75, left hemisphere 3.4
2725 Female, age 75, unknown 2.8
2785 Male, age 18, unknown 2.5
2588 Male, age 74, left hemisphere 2.2
1821 Female, age 72, unknown 2.0
1904 Male, age 53, unknown 2.0
2503 Female, age 72, unknown 1.9
1954 Female, age 42, unknown 1.8
1865 Male, age 51, unknown 1.5
2823 Male, age 76, right hemisphere 1.5
2227 Male, age 72, unknown 1.3
2769 Male, age 72, unknown 1.3
Substantia nigra
nTPM: 4.3
2665 Male, age 74, both hemispheres 6.0
1889 Female, age 72, unknown 5.8
1916 Female, age 42, unknown 5.5
1941 Male, age 53, unknown 5.4
1851 Male, age 51, unknown 3.5
2241 Male, age 72, unknown 3.4
2409 Female, age 72, unknown 3.4
2583 Male, age 75, right hemisphere 3.4
2699 Male, age 18, unknown 3.1
2590 Female, age 75, unknown 2.8
Superior colliculus
nTPM: 6.0
2087 Female, age 72, unknown 11.5
2261 Male, age 18, unknown 10.8
1913 Female, age 42, unknown 7.8
1995 Male, age 72, unknown 6.8
2668 Female, age 75, unknown 5.1
2664 Male, age 75, both hemispheres 4.5
1796 Male, age 53, unknown 3.9
1895 Male, age 76, right hemisphere 3.5
1839 Male, age 51, unknown 3.3
2587 Male, age 74, left hemisphere 2.8
Ventral tegmental area
nTPM: 3.6
2218 Male, age 76, both hemispheres 6.8
2410 Female, age 72, unknown 4.7
1915 Female, age 42, unknown 3.2
1942 Male, age 51, unknown 3.0
2021 Male, age 53, unknown 2.4
2223 Female, age 72, unknown 1.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.3
Samples: 139

Max nTPM: 4.9
Min nTPM: 0.1
Std nTPM: 0.9
Median nTPM: 1.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 4.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 3.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 3.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 3.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 2.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 2.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 2.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 2.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 2.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.5
FF:10158-103A5 76 years, female 0.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 15.5
Min nTPM: 2.5
Sample A Female 15.5
Sample B Female 7.6
Sample C Male 13.1
Sample D Male 2.5
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 25.2
Min nTPM: 2.4
Sample A Female 2.4
Sample B Female 6.0
Sample C Male 25.2
Sample D Male 3.4
Periaqueductal gray
nTPM: 5.2
Samples: 3

Max nTPM: 6.2
Min nTPM: 4.6
Sample B Female 4.7
Sample C Male 6.2
Sample D Male 4.6
Superior colliculi
nTPM: 8.0
Samples: 4

Max nTPM: 13.3
Min nTPM: 5.0
Sample A Female 5.6
Sample B Female 5.0
Sample C Male 13.3
Sample D Male 8.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.7
Samples: 4

Max nTPM: 10.0
Min nTPM: 7.9
Sample A Male 7.9
Sample B Male 10.0
Sample C Female 8.5
Sample D Female 8.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69514494 Antisense, RP_050419_03_D10, Mouse strain C57BL/6J (56 days, male) 0.4
77332096 Antisense, RP_070116_02_A09, Mouse strain C57BL/6J (56 days, male) 0.1

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