MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:41.0 nTPM
GTEx:5.7 nTPM
FANTOM5:60.0 Scaled Tags Per Million
Pig:25.5 nTPM
Mouse:6.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.9
2019 Male, age 18, unknown 47.7
2828 Female, age 72, unknown 36.0
1827 Male, age 72, unknown 32.8
1833 Male, age 53, unknown 32.1
1870 Female, age 42, unknown 32.1
1830 Male, age 51, unknown 31.9
2586 Male, age 75, left hemisphere 31.0
2411 Female, age 72, unknown 28.8
2666 Male, age 74, left hemisphere 28.4
2219 Male, age 76, both hemispheres 28.3
Dorsal raphe nucleus
nTPM: 30.4
2016 Female, age 72, unknown 34.7
1828 Male, age 53, unknown 31.9
2750 Male, age 76, both hemispheres 30.3
2298 Female, age 72, unknown 29.9
2047 Male, age 72, unknown 25.3
Inferior colliculus
nTPM: 30.6
2097 Female, age 72, unknown 33.4
1890 Male, age 53, unknown 32.3
1848 Female, age 42, unknown 30.9
2849 Male, age 72, unknown 25.9
Median raphe nucleus
nTPM: 24.6
2220 Male, age 76, midline 24.6
Periaquaductal grey, anterior
nTPM: 33.4
1947 Male, age 18, unknown 36.2
2502 Female, age 75, unknown 33.9
1795 Male, age 51, unknown 30.0
Periaquaductal grey, dorsal
nTPM: 34.6
1831 Male, age 72, unknown 38.1
2850 Male, age 76, both hemispheres 35.1
1840 Male, age 53, unknown 32.8
2464 Female, age 72, unknown 32.3
Periaquaductal grey, lateral
nTPM: 32.1
2140 Male, age 76, both hemispheres 35.8
2272 Male, age 74, both hemispheres 34.0
2053 Male, age 18, unknown 26.5
Pretectal area
nTPM: 41.0
1944 Female, age 72, unknown 54.3
2007 Male, age 72, unknown 51.8
1817 Female, age 42, unknown 50.0
1816 Male, age 51, unknown 48.8
1815 Male, age 53, unknown 48.0
2667 Female, age 75, unknown 40.7
2273 Male, age 74, both hemispheres 37.3
2224 Female, age 72, unknown 32.3
2316 Male, age 76, right hemisphere 31.6
2407 Male, age 75, both hemispheres 31.2
2825 Male, age 18, unknown 24.7
Red nucleus
nTPM: 34.3
2785 Male, age 18, unknown 44.3
2503 Female, age 72, unknown 38.7
1954 Female, age 42, unknown 37.0
1904 Male, age 53, unknown 36.5
2823 Male, age 76, right hemisphere 35.9
1821 Female, age 72, unknown 34.7
1865 Male, age 51, unknown 34.2
2227 Male, age 72, unknown 31.4
2725 Female, age 75, unknown 31.2
2588 Male, age 74, left hemisphere 30.5
2769 Male, age 72, unknown 30.5
2584 Male, age 75, left hemisphere 26.4
Substantia nigra
nTPM: 31.9
1889 Female, age 72, unknown 43.0
2409 Female, age 72, unknown 34.1
1851 Male, age 51, unknown 33.2
1916 Female, age 42, unknown 32.0
2241 Male, age 72, unknown 31.0
2583 Male, age 75, right hemisphere 30.7
2590 Female, age 75, unknown 30.5
1941 Male, age 53, unknown 29.1
2665 Male, age 74, both hemispheres 28.0
2699 Male, age 18, unknown 27.8
Superior colliculus
nTPM: 36.0
2087 Female, age 72, unknown 45.2
1995 Male, age 72, unknown 42.5
1913 Female, age 42, unknown 40.9
2668 Female, age 75, unknown 38.7
2261 Male, age 18, unknown 37.6
1895 Male, age 76, right hemisphere 32.7
1796 Male, age 53, unknown 31.8
2587 Male, age 74, left hemisphere 30.9
1839 Male, age 51, unknown 30.3
2664 Male, age 75, both hemispheres 29.5
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 37.8
2218 Male, age 76, both hemispheres 33.6
1942 Male, age 51, unknown 31.6
1915 Female, age 42, unknown 29.1
2021 Male, age 53, unknown 27.7
2223 Female, age 72, unknown 26.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 9.4
Min nTPM: 3.0
Std nTPM: 1.2
Median nTPM: 5.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 9.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 9.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 9.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 8.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 8.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 8.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 7.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 7.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 7.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 60.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 60.0
FF:10158-103A5 76 years, female 60.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.4
Samples: 4

Max nTPM: 25.7
Min nTPM: 22.1
Sample A Female 25.7
Sample B Female 22.1
Sample C Male 24.3
Sample D Male 25.5
Midbrain
nTPM: 25.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 21.2
Sample A Female 31.3
Sample B Female 25.3
Sample C Male 24.2
Sample D Male 21.2
Periaqueductal gray
nTPM: 20.2
Samples: 3

Max nTPM: 22.3
Min nTPM: 17.8
Sample B Female 22.3
Sample C Male 17.8
Sample D Male 20.6
Superior colliculi
nTPM: 23.1
Samples: 4

Max nTPM: 26.9
Min nTPM: 19.4
Sample A Female 22.2
Sample B Female 19.4
Sample C Male 26.9
Sample D Male 23.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.8
Sample A Male 5.8
Sample B Male 8.2
Sample C Female 6.9
Sample D Female 6.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69407941 Antisense, RP_050414_02_G01, Mouse strain C57BL/6J (56 days, male) 0.8

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