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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A16 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
125.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
636.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
569.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
534.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
468.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
448.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
354.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
336.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
335.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
329.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
309.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
305.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
297.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
294.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
293.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
292.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
292.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
291.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
276.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
276.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
273.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
272.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
258.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
256.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
253.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
250.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
246.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
243.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
242.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
240.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
240.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
238.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
238.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
233.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
233.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
231.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
225.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
224.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
224.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
223.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
223.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
221.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
217.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
216.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
214.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
213.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
210.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
209.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
209.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
205.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
205.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
205.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
204.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
204.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
202.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
201.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
200.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
199.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
198.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
198.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
195.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
192.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
189.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
188.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
188.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
187.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
187.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
186.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
184.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
183.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
182.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
181.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
180.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
178.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
178.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
177.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
177.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
176.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
174.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
174.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
172.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
170.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
169.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
168.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
168.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
167.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
166.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
166.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
164.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
164.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
164.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
162.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
162.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
162.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
161.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
161.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
160.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
159.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
157.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
157.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
154.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
153.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
153.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
152.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
151.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
151.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
149.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
147.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
147.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
147.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
147.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
146.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
145.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
144.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
142.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
141.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
141.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
140.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
139.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
138.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
138.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
138.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
138.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
137.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
137.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
137.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
136.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
136.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
136.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
134.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
133.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
133.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
133.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
132.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
131.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
131.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
129.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
129.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
129.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
129.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
128.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
128.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
128.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
128.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
127.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
126.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
126.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
125.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
125.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
125.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
125.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
124.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
123.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
123.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
123.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
123.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
122.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
121.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
121.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
120.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
119.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
119.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
119.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
119.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
118.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
118.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
118.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
117.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
116.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
116.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
114.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
114.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
113.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
112.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
112.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
112.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
112.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
111.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
111.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
111.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
110.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
109.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
109.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
108.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
108.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
108.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
108.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
108.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
107.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
107.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
107.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
106.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
105.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
105.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
104.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
104.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
103.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
102.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
102.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
102.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
102.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
102.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
101.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
98.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
98.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
98.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
98.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
97.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
97.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
96.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
95.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
94.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
94.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
93.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
92.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
92.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
91.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
91.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
91.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
91.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
90.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
90.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
89.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
89.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
89.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
89.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
88.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
88.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
88.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
87.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
86.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
86.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
86.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
86.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
86.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
85.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
84.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
83.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
83.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
83.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
83.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
82.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
81.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
80.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
80.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
80.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
79.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
79.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
79.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
79.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
78.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
78.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
78.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
78.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
77.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
77.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
76.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
76.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
75.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
74.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
74.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
73.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
72.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
72.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
72.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
71.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
71.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
71.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
70.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
70.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
69.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
69.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
68.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
68.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
68.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
68.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
67.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
66.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
66.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
66.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
65.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
63.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
62.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
62.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
60.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
60.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
59.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
59.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
58.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
58.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
56.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
55.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
55.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
54.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
53.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
51.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
51.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
50.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
50.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
50.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
37.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
37.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
34.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
32.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
30.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
28.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
25.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
24.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
19.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
S100A16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
100.7
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
907.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
826.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
789.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
422.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
367.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
311.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
287.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
286.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
286.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
271.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
271.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
238.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
235.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
232.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
230.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
218.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
211.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
209.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
208.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
207.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
196.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
189.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
183.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
180.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
170.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
167.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
166.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
165.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
161.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
157.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
156.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
150.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
149.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
147.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
145.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
144.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
143.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
142.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
142.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
140.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
139.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
139.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
135.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
134.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
133.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
131.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
131.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
127.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
126.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
125.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
123.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
121.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
120.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
120.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
119.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
118.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
114.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
114.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
112.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
112.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
110.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
108.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
108.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
108.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
108.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
107.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
107.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
106.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
106.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
105.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
105.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
104.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
104.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
104.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
102.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
102.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
102.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
102.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
100.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
100.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
99.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
96.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
96.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
96.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
95.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
94.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
93.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
93.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
92.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
91.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
89.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
89.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
87.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
86.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
84.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
83.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
81.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
81.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
81.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
81.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
80.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
79.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
79.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
79.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
78.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
78.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
78.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
78.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
77.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
75.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
75.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
74.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
74.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
74.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
74.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
74.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
74.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
73.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
73.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
73.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
71.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
71.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
71.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
70.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
70.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
69.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
68.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
67.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
67.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
65.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
65.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
64.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
63.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
62.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
62.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
62.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
61.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
61.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
61.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
60.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
60.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
60.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
59.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
59.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
59.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
59.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
58.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
58.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
56.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
56.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
55.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
55.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
54.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
53.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
53.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
51.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
51.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
50.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
50.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
49.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
49.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
49.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
49.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
48.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
47.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
47.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
46.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
46.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
46.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
45.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
44.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
44.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
43.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
43.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
41.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
35.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
35.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
35.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
29.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
29.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
27.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
383
Tumor
1.9
427
Tumor
1.9
271
Tumor
1.3
851
Tumor
1.3
147
Tumor
1.2
135
Tumor
1.2
957
Tumor
1.1
387
Tumor
1.0
125
Tumor
1.0
313
Tumor
1.0
161
Tumor
0.9
953
Tumor
0.8
445
Tumor
0.8
917
Tumor
0.8
431
Tumor
0.8
311
Tumor
0.8
745
Tumor
0.8
357
Tumor
0.8
743
Tumor
0.7
471
Tumor
0.7
533
Tumor
0.7
1013
Tumor
0.6
221
Tumor
0.6
567
Tumor
0.6
361
Tumor
0.6
393
Tumor
0.5
257
Tumor
0.5
375
Tumor
0.5
921
Tumor
0.5
545
Tumor
0.5
423
Tumor
0.5
983
Tumor
0.4
137
Tumor
0.4
395
Tumor
0.4
422
Normal
0.4
131
Tumor
0.4
663
Tumor
0.4
465
Tumor
0.4
1031
Tumor
0.3
124
Normal
0.3
813
Tumor
0.3
186
Normal
0.3
111
Normal
0.3
672
Normal
0.3
451
Tumor
0.3
721
Tumor
0.3
447
Tumor
0.3
777
Tumor
0.3
951
Tumor
0.2
525
Tumor
0.2
744
Normal
0.2
384
Normal
0.2
497
Tumor
0.2
114
Normal
0.2
553
Tumor
0.2
412
Normal
0.2
126
Normal
0.2
461
Tumor
0.2
958
Normal
0.2
214
Normal
0.2
1042
Normal
0.2
878
Normal
0.2
563
Tumor
0.2
746
Normal
0.2
716
Normal
0.1
1021
Tumor
0.1
388
Normal
0.1
1025
Tumor
0.1
444
Normal
0.1
737
Tumor
0.1
331
Tumor
0.1
617
Tumor
0.1
1014
Normal
0.1
142
Normal
0.1
358
Normal
0.1
984
Normal
0.1
343
Tumor
0.1
297
Tumor
0.1
414
Normal
0.1
425
Tumor
0.1
355
Tumor
0.1
912
Normal
0.1
278
Normal
0.1
954
Normal
0.1
342
Normal
0.1
332
Normal
0.1
727
Tumor
0.1
698
Normal
0.1
1032
Normal
0.1
421
Tumor
0.1
136
Normal
0.1
376
Normal
0.1
498
Normal
0.1
424
Normal
0.0
976
Normal
0.0
185
Tumor
0.0
352
Normal
0.0
446
Normal
0.0
564
Normal
0.0
434
Normal
0.0
477
Tumor
0.0
344
Normal
0.0
468
Normal
0.0
146
Normal
0.0
192
Normal
0.0
426
Normal
0.0
817
Tumor
0.0
452
Normal
0.0
572
Normal
0.0
536
Normal
0.0
366
Normal
0.0
636
Normal
0.0
722
Normal
0.0
365
Tumor
0.0
538
Normal
0.0
362
Normal
0.0
686
Normal
0.0
392
Normal
0.0
354
Normal
0.0
386
Normal
0.0
284
Normal
0.0
312
Normal
0.0
814
Normal
0.0
723
Tumor
0.0
696
Normal
0.0
724
Normal
0.0
411
Tumor
0.0
882
Normal
0.0
616
Normal
0.0
857
Tumor
-0.1
968
Normal
-0.1
494
Normal
-0.1
456
Normal
-0.1
228
Normal
-0.1
852
Normal
-0.1
1016
Normal
-0.1
938
Normal
-0.1
224
Normal
-0.1
546
Normal
-0.1
914
Normal
-0.1
1022
Normal
-0.1
558
Normal
-0.1
394
Normal
-0.1
223
Tumor
-0.1
874
Normal
-0.1
1043
Tumor
-0.1
187
Tumor
-0.1
268
Normal
-0.1
478
Normal
-0.1
966
Normal
-0.1
982
Normal
-0.1
448
Normal
-0.1
574
Normal
-0.1
1044
Normal
-0.1
554
Normal
-0.1
132
Normal
-0.1
568
Normal
-0.1
956
Normal
-0.1
738
Normal
-0.1
628
Normal
-0.1
866
Normal
-0.1
618
Normal
-0.1
262
Normal
-0.1
492
Normal
-0.2
742
Normal
-0.2
1028
Normal
-0.2
148
Normal
-0.2
1026
Normal
-0.2
283
Tumor
-0.2
141
Tumor
-0.2
944
Normal
-0.2
924
Normal
-0.2
391
Tumor
-0.2
534
Normal
-0.2
314
Normal
-0.2
943
Tumor
-0.2
952
Normal
-0.2
415
Tumor
-0.2
172
Normal
-0.2
648
Normal
-0.2
272
Normal
-0.2
884
Normal
-0.2
463
Tumor
-0.2
285
Tumor
-0.2
666
Normal
-0.2
662
Normal
-0.2
396
Normal
-0.2
474
Normal
-0.2
261
Tumor
-0.2
298
Normal
-0.2
528
Normal
-0.2
368
Normal
-0.2
128
Normal
-0.3
232
Normal
-0.3
923
Tumor
-0.3
222
Normal
-0.3
516
Normal
-0.3
975
Tumor
-0.3
883
Tumor
-0.3
967
Tumor
-0.3
138
Normal
-0.3
428
Normal
-0.3
868
Normal
-0.3
231
Tumor
-0.3
432
Normal
-0.3
367
Tumor
-0.3
697
Tumor
-0.3
715
Tumor
-0.3
258
Normal
-0.3
728
Normal
-0.3
647
Tumor
-0.3
664
Normal
-0.3
535
Tumor
-0.3
277
Tumor
-0.3
515
Tumor
-0.3
1046
Normal
-0.3
455
Tumor
-0.3
978
Normal
-0.3
573
Tumor
-0.3
188
Normal
-0.3
642
Normal
-0.3
218
Normal
-0.4
191
Tumor
-0.4
756
Normal
-0.4
858
Normal
-0.4
922
Normal
-0.4
416
Normal
-0.4
864
Normal
-0.4
862
Normal
-0.4
488
Normal
-0.4
916
Normal
-0.4
472
Normal
-0.4
482
Normal
-0.4
356
Normal
-0.4
818
Normal
-0.4
571
Tumor
-0.4
823
Tumor
-0.4
963
Tumor
-0.4
714
Normal
-0.5
466
Normal
-0.5
353
Tumor
-0.5
341
Tumor
-0.5
162
Normal
-0.5
955
Tumor
-0.5
473
Tumor
-0.5
413
Tumor
-0.5
926
Normal
-0.5
462
Normal
-0.5
816
Normal
-0.5
113
Tumor
-0.5
351
Tumor
-0.5
741
Tumor
-0.5
918
Normal
-0.5
195
Tumor
-0.5
443
Tumor
-0.5
467
Tumor
-0.5
877
Tumor
-0.5
615
Tumor
-0.5
713
Tumor
-0.5
145
Tumor
-0.5
267
Tumor
-0.6
217
Tumor
-0.6
865
Tumor
-0.6
537
Tumor
-0.6
464
Normal
-0.6
112
Tumor
-0.6
514
Normal
-0.6
915
Tumor
-0.6
524
Normal
-0.6
977
Tumor
-0.6
778
Normal
-0.6
286
Normal
-0.6
436
Normal
-0.6
327
Tumor
-0.6
786
Normal
-0.6
965
Tumor
-0.6
964
Normal
-0.7
861
Tumor
-0.7
483
Tumor
-0.7
433
Tumor
-0.7
196
Normal
-0.7
627
Tumor
-0.7
491
Tumor
-0.7
785
Tumor
-0.7
487
Tumor
-0.7
863
Tumor
-0.7
227
Tumor
-0.7
881
Tumor
-0.7
913
Tumor
-0.7
484
Normal
-0.7
641
Tumor
-0.8
212
Normal
-0.8
873
Tumor
-0.8
493
Tumor
-0.8
526
Normal
-0.8
123
Tumor
-0.8
518
Normal
-0.9
213
Tumor
-0.9
1027
Tumor
-0.9
363
Tumor
-0.9
481
Tumor
-0.9
328
Normal
-0.9
1045
Tumor
-0.9
557
Tumor
-0.9
1041
Tumor
-0.9
127
Tumor
-1.0
364
Normal
-1.0
695
Tumor
-1.0
824
Normal
-1.0
171
Tumor
-1.1
513
Tumor
-1.1
517
Tumor
-1.1
385
Tumor
-1.1
211
Tumor
-1.1
911
Tumor
-1.1
685
Tumor
-1.1
1015
Tumor
-1.2
671
Tumor
-1.2
435
Tumor
-1.2
815
Tumor
-1.2
661
Tumor
-1.2
925
Tumor
-1.3
867
Tumor
-1.3
937
Tumor
-1.3
523
Tumor
-1.3
981
Tumor
-1.3
665
Tumor
-1.3
527
Tumor
-1.4
755
Tumor
-1.5
635
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.