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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMO2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
172.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
601.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
515.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
435.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
426.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
403.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
394.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
392.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
374.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
370.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
357.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
346.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
343.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
343.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
340.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
337.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
328.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
327.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
321.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
318.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
317.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
312.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
310.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
309.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
308.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
302.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
301.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
301.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
300.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
296.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
295.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
293.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
292.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
287.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
287.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
285.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
284.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
284.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
282.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
281.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
280.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
280.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
276.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
275.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
275.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
275.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
274.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
273.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
273.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
273.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
266.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
266.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
263.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
260.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
260.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
260.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
258.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
255.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
255.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
252.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
252.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
251.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
250.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
250.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
249.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
248.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
248.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
248.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
245.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
242.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
238.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
238.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
238.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
236.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
235.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
234.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
234.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
234.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
234.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
233.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
232.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
231.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
229.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
229.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
228.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
228.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
226.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
226.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
224.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
222.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
221.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
221.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
220.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
218.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
218.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
217.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
216.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
216.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
216.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
214.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
214.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
211.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
208.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
208.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
208.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
207.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
206.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
203.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
203.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
202.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
202.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
201.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
201.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
197.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
196.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
196.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
195.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
195.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
195.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
195.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
192.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
192.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
191.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
191.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
191.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
190.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
190.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
189.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
187.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
186.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
185.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
183.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
182.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
182.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
181.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
181.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
180.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
179.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
179.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
178.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
178.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
178.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
178.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
177.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
177.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
176.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
175.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
175.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
175.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
175.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
173.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
173.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
173.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
172.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
172.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
171.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
170.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
170.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
169.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
169.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
169.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
168.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
168.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
168.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
167.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
167.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
166.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
165.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
163.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
163.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
163.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
162.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
161.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
161.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
160.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
159.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
158.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
158.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
158.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
157.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
156.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
156.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
156.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
156.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
155.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
155.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
154.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
154.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
153.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
153.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
152.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
149.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
149.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
149.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
147.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
145.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
144.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
144.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
144.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
144.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
143.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
141.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
140.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
140.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
140.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
139.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
139.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
139.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
139.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
138.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
138.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
138.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
138.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
138.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
137.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
137.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
137.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
136.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
136.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
136.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
135.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
135.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
135.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
135.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
135.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
135.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
134.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
134.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
133.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
133.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
133.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
131.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
131.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
130.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
130.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
130.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
130.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
130.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
129.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
128.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
128.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
128.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
128.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
127.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
127.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
127.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
127.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
126.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
126.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
124.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
124.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
124.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
123.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
122.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
122.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
122.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
121.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
121.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
121.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
121.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
120.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
119.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
118.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
118.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
117.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
117.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
116.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
114.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
112.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
111.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
111.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
111.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
111.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
110.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
110.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
108.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
108.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
107.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
106.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
106.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
105.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
105.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
104.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
104.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
104.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
103.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
103.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
103.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
102.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
101.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
101.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
99.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
99.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
99.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
97.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
97.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
96.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
96.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
95.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
95.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
94.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
94.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
94.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
93.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
93.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
93.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
92.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
92.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
92.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
92.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
91.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
91.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
91.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
91.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
90.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
90.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
90.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
89.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
89.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
88.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
87.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
87.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
85.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
82.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
80.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
80.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
79.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
78.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
78.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
77.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
75.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
75.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
72.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
72.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
72.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
72.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
69.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
67.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
67.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
66.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
66.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
63.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
62.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
62.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
60.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
58.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
56.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
54.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
53.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
46.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
46.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
45.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
36.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
35.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUMO2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
130.9
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
347.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
336.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
316.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
309.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
308.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
298.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
261.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
259.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
255.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
237.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
236.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
234.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
233.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
230.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
228.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
226.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
222.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
221.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
217.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
216.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
213.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
212.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
202.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
200.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
199.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
199.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
199.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
198.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
198.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
197.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
196.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
190.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
189.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
187.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
182.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
180.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
180.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
177.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
176.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
175.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
175.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
173.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
169.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
168.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
167.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
166.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
166.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
165.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
165.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
163.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
162.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
161.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
160.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
160.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
159.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
158.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
157.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
157.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
156.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
155.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
155.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
155.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
154.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
152.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
152.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
152.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
152.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
151.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
151.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
150.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
150.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
150.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
149.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
148.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
148.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
148.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
146.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
146.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
145.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
145.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
144.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
142.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
141.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
141.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
140.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
140.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
139.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
138.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
138.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
137.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
136.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
135.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
135.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
134.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
133.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
133.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
132.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
132.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
132.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
131.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
131.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
130.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
129.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
126.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
126.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
126.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
125.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
125.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
124.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
124.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
123.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
122.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
122.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
121.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
120.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
120.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
119.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
119.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
119.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
119.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
118.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
118.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
115.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
115.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
114.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
114.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
113.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
112.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
112.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
110.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
110.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
110.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
109.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
109.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
108.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
108.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
107.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
107.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
106.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
105.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
105.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
104.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
103.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
103.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
103.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
102.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
101.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
101.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
101.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
100.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
100.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
100.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
100.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
99.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
99.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
99.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
98.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
95.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
95.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
95.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
94.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
94.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
94.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
93.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
93.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
93.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
93.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
92.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
92.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
92.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
91.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
90.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
90.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
90.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
89.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
89.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
88.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
87.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
87.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
86.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
86.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
86.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
86.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
85.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
85.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
83.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
83.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
82.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
82.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
81.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
81.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
79.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
79.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
79.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
79.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
78.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
76.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
76.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
75.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
75.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
74.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
73.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
73.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
73.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
73.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
72.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
71.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
70.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
70.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
68.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
67.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
66.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
66.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
65.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
64.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
64.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
61.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
61.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
60.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
58.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
57.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
57.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
46.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
38.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
2.1
965
Tumor
1.6
533
Tumor
1.3
131
Tumor
1.1
951
Tumor
1.0
435
Tumor
1.0
743
Tumor
1.0
271
Tumor
1.0
1031
Tumor
0.9
983
Tumor
0.8
277
Tumor
0.8
921
Tumor
0.8
661
Tumor
0.8
737
Tumor
0.7
1013
Tumor
0.7
425
Tumor
0.7
341
Tumor
0.7
525
Tumor
0.6
331
Tumor
0.6
963
Tumor
0.6
727
Tumor
0.6
285
Tumor
0.6
967
Tumor
0.6
227
Tumor
0.6
517
Tumor
0.6
1025
Tumor
0.6
477
Tumor
0.5
545
Tumor
0.5
443
Tumor
0.5
385
Tumor
0.5
473
Tumor
0.5
471
Tumor
0.5
523
Tumor
0.5
221
Tumor
0.5
536
Normal
0.5
455
Tumor
0.5
363
Tumor
0.5
537
Tumor
0.4
1021
Tumor
0.4
467
Tumor
0.4
553
Tumor
0.4
981
Tumor
0.4
431
Tumor
0.4
923
Tumor
0.4
881
Tumor
0.4
975
Tumor
0.4
391
Tumor
0.4
977
Tumor
0.4
535
Tumor
0.4
211
Tumor
0.4
375
Tumor
0.4
695
Tumor
0.3
433
Tumor
0.3
497
Tumor
0.3
917
Tumor
0.3
213
Tumor
0.3
1015
Tumor
0.3
411
Tumor
0.3
447
Tumor
0.3
1043
Tumor
0.3
413
Tumor
0.3
573
Tumor
0.3
641
Tumor
0.3
195
Tumor
0.3
647
Tumor
0.3
311
Tumor
0.3
877
Tumor
0.3
297
Tumor
0.2
351
Tumor
0.2
937
Tumor
0.2
724
Normal
0.2
421
Tumor
0.2
355
Tumor
0.2
953
Tumor
0.2
161
Tumor
0.2
478
Normal
0.2
671
Tumor
0.2
112
Tumor
0.2
741
Tumor
0.2
423
Tumor
0.2
127
Tumor
0.2
814
Normal
0.1
427
Tumor
0.1
663
Tumor
0.1
515
Tumor
0.1
916
Normal
0.1
444
Normal
0.1
966
Normal
0.1
958
Normal
0.1
524
Normal
0.1
125
Tumor
0.1
192
Normal
0.1
984
Normal
0.1
463
Tumor
0.1
357
Tumor
0.1
978
Normal
0.1
918
Normal
0.1
861
Tumor
0.1
185
Tumor
0.1
123
Tumor
0.1
268
Normal
0.1
327
Tumor
0.1
422
Normal
0.1
434
Normal
0.1
367
Tumor
0.1
261
Tumor
0.1
415
Tumor
0.1
745
Tumor
0.0
465
Tumor
0.0
922
Normal
0.0
356
Normal
0.0
445
Tumor
0.0
715
Tumor
0.0
538
Normal
0.0
137
Tumor
0.0
925
Tumor
0.0
924
Normal
0.0
777
Tumor
0.0
557
Tumor
0.0
976
Normal
0.0
383
Tumor
0.0
113
Tumor
0.0
313
Tumor
0.0
516
Normal
0.0
685
Tumor
0.0
867
Tumor
0.0
126
Normal
0.0
926
Normal
0.0
785
Tumor
0.0
481
Tumor
0.0
915
Tumor
0.0
283
Tumor
0.0
364
Normal
0.0
968
Normal
0.0
483
Tumor
0.0
883
Tumor
0.0
513
Tumor
0.0
187
Tumor
0.0
217
Tumor
0.0
257
Tumor
0.0
982
Normal
0.0
498
Normal
0.0
1014
Normal
0.0
665
Tumor
0.0
361
Tumor
-0.1
461
Tumor
-0.1
527
Tumor
-0.1
778
Normal
-0.1
492
Normal
-0.1
493
Tumor
-0.1
384
Normal
-0.1
147
Tumor
-0.1
393
Tumor
-0.1
1016
Normal
-0.1
697
Tumor
-0.1
786
Normal
-0.1
514
Normal
-0.1
312
Normal
-0.1
865
Tumor
-0.1
954
Normal
-0.1
343
Tumor
-0.1
756
Normal
-0.1
353
Tumor
-0.1
135
Tumor
-0.1
451
Tumor
-0.1
664
Normal
-0.1
878
Normal
-0.1
472
Normal
-0.1
212
Normal
-0.1
1044
Normal
-0.1
817
Tumor
-0.1
448
Normal
-0.1
672
Normal
-0.1
813
Tumor
-0.1
365
Tumor
-0.1
362
Normal
-0.2
482
Normal
-0.2
1027
Tumor
-0.2
387
Tumor
-0.2
534
Normal
-0.2
863
Tumor
-0.2
414
Normal
-0.2
554
Normal
-0.2
188
Normal
-0.2
723
Tumor
-0.2
528
Normal
-0.2
1041
Tumor
-0.2
744
Normal
-0.2
224
Normal
-0.2
943
Tumor
-0.2
1045
Tumor
-0.2
563
Tumor
-0.2
146
Normal
-0.2
666
Normal
-0.2
955
Tumor
-0.2
546
Normal
-0.2
395
Tumor
-0.2
138
Normal
-0.2
424
Normal
-0.2
196
Normal
-0.2
278
Normal
-0.2
366
Normal
-0.2
952
Normal
-0.2
328
Normal
-0.2
368
Normal
-0.2
141
Tumor
-0.2
574
Normal
-0.2
124
Normal
-0.2
223
Tumor
-0.2
755
Tumor
-0.2
386
Normal
-0.2
376
Normal
-0.2
468
Normal
-0.2
412
Normal
-0.2
191
Tumor
-0.2
567
Tumor
-0.2
222
Normal
-0.2
571
Tumor
-0.2
388
Normal
-0.2
558
Normal
-0.2
648
Normal
-0.3
1022
Normal
-0.3
964
Normal
-0.3
262
Normal
-0.3
474
Normal
-0.3
462
Normal
-0.3
428
Normal
-0.3
1026
Normal
-0.3
142
Normal
-0.3
214
Normal
-0.3
662
Normal
-0.3
728
Normal
-0.3
742
Normal
-0.3
416
Normal
-0.3
111
Normal
-0.3
272
Normal
-0.3
426
Normal
-0.3
218
Normal
-0.3
145
Tumor
-0.3
518
Normal
-0.3
738
Normal
-0.3
956
Normal
-0.3
914
Normal
-0.3
944
Normal
-0.3
136
Normal
-0.3
394
Normal
-0.3
1046
Normal
-0.3
1032
Normal
-0.3
114
Normal
-0.3
231
Tumor
-0.3
332
Normal
-0.3
526
Normal
-0.3
714
Normal
-0.4
128
Normal
-0.4
615
Tumor
-0.4
882
Normal
-0.4
446
Normal
-0.4
396
Normal
-0.4
456
Normal
-0.4
171
Tumor
-0.4
572
Normal
-0.4
716
Normal
-0.4
746
Normal
-0.4
698
Normal
-0.4
568
Normal
-0.4
284
Normal
-0.4
628
Normal
-0.4
913
Tumor
-0.4
1042
Normal
-0.4
352
Normal
-0.4
884
Normal
-0.4
938
Normal
-0.4
862
Normal
-0.4
258
Normal
-0.4
1028
Normal
-0.5
858
Normal
-0.5
491
Tumor
-0.5
721
Tumor
-0.5
132
Normal
-0.5
866
Normal
-0.5
232
Normal
-0.5
484
Normal
-0.5
436
Normal
-0.5
464
Normal
-0.5
392
Normal
-0.5
432
Normal
-0.5
696
Normal
-0.5
686
Normal
-0.5
286
Normal
-0.5
823
Tumor
-0.5
627
Tumor
-0.5
868
Normal
-0.5
162
Normal
-0.5
466
Normal
-0.5
488
Normal
-0.5
186
Normal
-0.5
148
Normal
-0.5
344
Normal
-0.5
342
Normal
-0.5
298
Normal
-0.5
864
Normal
-0.6
494
Normal
-0.6
564
Normal
-0.6
635
Tumor
-0.6
228
Normal
-0.6
487
Tumor
-0.6
873
Tumor
-0.6
617
Tumor
-0.6
874
Normal
-0.6
713
Tumor
-0.6
354
Normal
-0.6
818
Normal
-0.7
912
Normal
-0.7
172
Normal
-0.7
852
Normal
-0.7
616
Normal
-0.7
358
Normal
-0.7
267
Tumor
-0.7
452
Normal
-0.7
314
Normal
-0.8
636
Normal
-0.8
911
Tumor
-0.8
816
Normal
-0.8
815
Tumor
-0.8
722
Normal
-0.8
642
Normal
-0.9
857
Tumor
-0.9
618
Normal
-0.9
851
Tumor
-1.0
824
Normal
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.