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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLN3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
166.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
145.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
136.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
133.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
119.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
119.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
117.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
112.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
110.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
106.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
104.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
103.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
103.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
101.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
96.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
96.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
96.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
94.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
93.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
93.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
92.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
91.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
90.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
88.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
88.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
86.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
86.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
84.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
83.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
82.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
82.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
78.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
78.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
77.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
77.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
76.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
76.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
76.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
75.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
75.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
75.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
75.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
74.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
73.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
71.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
71.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
70.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
70.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
69.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
69.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
67.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
66.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
66.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
65.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
65.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
64.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
64.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
64.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
64.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
63.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
62.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
62.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
62.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
61.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
60.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
60.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
60.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
59.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
59.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
58.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
58.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
58.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
58.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
58.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
57.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
57.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
57.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
57.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
57.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
56.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
56.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
56.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
55.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
55.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
54.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
53.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
53.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
52.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
52.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
52.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
51.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
50.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
50.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
50.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
50.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
49.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
49.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
49.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
49.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
49.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
49.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
49.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
48.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
48.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
48.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
48.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
48.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
48.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
47.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
47.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
47.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
47.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
47.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
46.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
46.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
45.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
45.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
45.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
45.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
44.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
44.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
44.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
43.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
43.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
43.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
43.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
41.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
41.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
41.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
41.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
40.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
40.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
39.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
38.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
37.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
37.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
37.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
37.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
37.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
36.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
35.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
35.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
35.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
35.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
35.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
35.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
34.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
33.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
33.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
33.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
31.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
28.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
27.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
27.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
26.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
24.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
24.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
23.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
23.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
23.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
21.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
20.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLN3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
153.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
97.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
96.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
73.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
70.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
68.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
65.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
65.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
65.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
62.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
59.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
57.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
53.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
50.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
47.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
46.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
44.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
44.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
43.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
42.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
41.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
40.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
39.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
36.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
35.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
35.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
33.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
32.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
31.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
30.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
30.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
29.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
28.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
27.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
26.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
24.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
23.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
21.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
21.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
20.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
953
Tumor
2.0
883
Tumor
1.9
685
Tumor
1.9
1027
Tumor
1.7
527
Tumor
1.6
573
Tumor
1.5
963
Tumor
1.5
641
Tumor
1.5
545
Tumor
1.4
533
Tumor
1.4
257
Tumor
1.3
387
Tumor
1.2
313
Tumor
1.2
957
Tumor
1.2
965
Tumor
1.1
491
Tumor
1.1
697
Tumor
1.1
663
Tumor
1.0
277
Tumor
1.0
343
Tumor
1.0
477
Tumor
0.9
395
Tumor
0.9
497
Tumor
0.9
433
Tumor
0.9
635
Tumor
0.9
355
Tumor
0.8
925
Tumor
0.8
647
Tumor
0.8
135
Tumor
0.8
125
Tumor
0.8
525
Tumor
0.8
817
Tumor
0.7
361
Tumor
0.7
271
Tumor
0.7
557
Tumor
0.7
231
Tumor
0.6
267
Tumor
0.6
123
Tumor
0.6
471
Tumor
0.6
297
Tumor
0.6
147
Tumor
0.6
493
Tumor
0.6
455
Tumor
0.6
923
Tumor
0.6
223
Tumor
0.6
777
Tumor
0.6
187
Tumor
0.5
617
Tumor
0.5
473
Tumor
0.5
975
Tumor
0.5
571
Tumor
0.5
383
Tumor
0.5
443
Tumor
0.5
745
Tumor
0.4
513
Tumor
0.4
483
Tumor
0.4
515
Tumor
0.4
435
Tumor
0.4
937
Tumor
0.4
357
Tumor
0.4
943
Tumor
0.4
823
Tumor
0.4
425
Tumor
0.4
427
Tumor
0.4
431
Tumor
0.3
393
Tumor
0.3
445
Tumor
0.3
421
Tumor
0.3
171
Tumor
0.3
715
Tumor
0.3
517
Tumor
0.3
461
Tumor
0.3
487
Tumor
0.3
447
Tumor
0.3
1045
Tumor
0.2
127
Tumor
0.2
913
Tumor
0.2
285
Tumor
0.2
665
Tumor
0.2
137
Tumor
0.2
857
Tumor
0.2
814
Normal
0.2
353
Tumor
0.2
873
Tumor
0.2
553
Tumor
0.2
113
Tumor
0.2
185
Tumor
0.1
411
Tumor
0.1
451
Tumor
0.1
413
Tumor
0.1
615
Tumor
0.1
351
Tumor
0.1
363
Tumor
0.1
467
Tumor
0.1
813
Tumor
0.0
721
Tumor
0.0
112
Tumor
0.0
211
Tumor
0.0
161
Tumor
0.0
514
Normal
0.0
283
Tumor
0.0
851
Tumor
0.0
375
Tumor
0.0
755
Tumor
0.0
516
Normal
0.0
224
Normal
0.0
867
Tumor
0.0
884
Normal
0.0
926
Normal
0.0
523
Tumor
0.0
367
Tumor
0.0
481
Tumor
-0.1
415
Tumor
-0.1
642
Normal
-0.1
865
Tumor
-0.1
327
Tumor
-0.1
537
Tumor
-0.1
881
Tumor
-0.1
124
Normal
-0.1
114
Normal
-0.1
524
Normal
-0.1
111
Normal
-0.1
567
Tumor
-0.1
311
Tumor
-0.1
526
Normal
-0.1
162
Normal
-0.1
914
Normal
-0.1
918
Normal
-0.1
141
Tumor
-0.1
268
Normal
-0.2
713
Tumor
-0.2
423
Tumor
-0.2
446
Normal
-0.2
955
Tumor
-0.2
432
Normal
-0.2
882
Normal
-0.2
861
Tumor
-0.2
434
Normal
-0.2
126
Normal
-0.2
922
Normal
-0.2
341
Tumor
-0.2
921
Tumor
-0.2
917
Tumor
-0.2
661
Tumor
-0.2
964
Normal
-0.2
863
Tumor
-0.2
128
Normal
-0.2
563
Tumor
-0.2
1044
Normal
-0.2
636
Normal
-0.2
1046
Normal
-0.2
188
Normal
-0.2
494
Normal
-0.2
145
Tumor
-0.2
391
Tumor
-0.3
331
Tumor
-0.3
627
Tumor
-0.3
365
Tumor
-0.3
444
Normal
-0.3
228
Normal
-0.3
672
Normal
-0.3
464
Normal
-0.3
172
Normal
-0.3
261
Tumor
-0.3
352
Normal
-0.3
227
Tumor
-0.3
924
Normal
-0.3
492
Normal
-0.3
695
Tumor
-0.3
877
Tumor
-0.3
488
Normal
-0.3
912
Normal
-0.3
465
Tumor
-0.3
664
Normal
-0.3
186
Normal
-0.3
412
Normal
-0.3
916
Normal
-0.3
148
Normal
-0.4
868
Normal
-0.4
878
Normal
-0.4
1021
Tumor
-0.4
1025
Tumor
-0.4
618
Normal
-0.4
286
Normal
-0.4
212
Normal
-0.4
866
Normal
-0.4
874
Normal
-0.4
616
Normal
-0.4
956
Normal
-0.4
388
Normal
-0.4
463
Tumor
-0.4
386
Normal
-0.4
951
Tumor
-0.4
328
Normal
-0.4
131
Tumor
-0.4
535
Tumor
-0.4
456
Normal
-0.4
312
Normal
-0.4
392
Normal
-0.4
468
Normal
-0.4
436
Normal
-0.4
474
Normal
-0.4
284
Normal
-0.4
628
Normal
-0.4
278
Normal
-0.5
364
Normal
-0.5
356
Normal
-0.5
662
Normal
-0.5
262
Normal
-0.5
952
Normal
-0.5
232
Normal
-0.5
385
Tumor
-0.5
528
Normal
-0.5
915
Tumor
-0.5
452
Normal
-0.5
394
Normal
-0.5
416
Normal
-0.5
298
Normal
-0.5
911
Tumor
-0.5
518
Normal
-0.5
671
Tumor
-0.5
968
Normal
-0.5
966
Normal
-0.5
536
Normal
-0.5
396
Normal
-0.6
272
Normal
-0.6
958
Normal
-0.6
786
Normal
-0.6
258
Normal
-0.6
466
Normal
-0.6
1026
Normal
-0.6
484
Normal
-0.6
138
Normal
-0.6
344
Normal
-0.6
778
Normal
-0.7
136
Normal
-0.7
314
Normal
-0.7
976
Normal
-0.7
954
Normal
-0.7
342
Normal
-0.7
938
Normal
-0.7
698
Normal
-0.7
354
Normal
-0.7
448
Normal
-0.7
498
Normal
-0.7
358
Normal
-0.7
686
Normal
-0.7
142
Normal
-0.7
648
Normal
-0.7
716
Normal
-0.7
756
Normal
-0.7
1028
Normal
-0.7
1042
Normal
-0.7
332
Normal
-0.7
422
Normal
-0.7
864
Normal
-0.8
746
Normal
-0.8
852
Normal
-0.8
1043
Tumor
-0.8
824
Normal
-0.8
862
Normal
-0.8
478
Normal
-0.8
944
Normal
-0.8
426
Normal
-0.8
967
Tumor
-0.8
462
Normal
-0.8
666
Normal
-0.8
722
Normal
-0.8
384
Normal
-0.8
132
Normal
-0.8
472
Normal
-0.9
534
Normal
-0.9
558
Normal
-0.9
482
Normal
-0.9
858
Normal
-0.9
428
Normal
-0.9
815
Tumor
-0.9
696
Normal
-0.9
574
Normal
-0.9
572
Normal
-0.9
368
Normal
-0.9
1022
Normal
-0.9
714
Normal
-0.9
366
Normal
-0.9
362
Normal
-0.9
538
Normal
-1.0
546
Normal
-1.0
564
Normal
-1.0
424
Normal
-1.0
146
Normal
-1.0
376
Normal
-1.0
568
Normal
-1.0
785
Tumor
-1.0
1041
Tumor
-1.0
414
Normal
-1.1
554
Normal
-1.1
816
Normal
-1.2
818
Normal
-1.2
1031
Tumor
-1.3
1032
Normal
-1.4
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
