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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAQR9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
38.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
22.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
19.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
3.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAQR9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
93.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
68.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
62.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
58.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
54.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
39.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
34.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
30.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
28.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
22.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
2.8
367
Tumor
2.5
983
Tumor
2.0
1025
Tumor
1.6
951
Tumor
1.6
815
Tumor
1.5
227
Tumor
1.1
617
Tumor
1.1
1031
Tumor
1.1
413
Tumor
1.1
271
Tumor
1.1
363
Tumor
1.0
1043
Tumor
1.0
535
Tumor
1.0
925
Tumor
1.0
473
Tumor
1.0
131
Tumor
1.0
135
Tumor
0.9
471
Tumor
0.8
635
Tumor
0.8
923
Tumor
0.8
1021
Tumor
0.8
661
Tumor
0.8
695
Tumor
0.8
921
Tumor
0.7
387
Tumor
0.7
851
Tumor
0.7
641
Tumor
0.7
477
Tumor
0.7
463
Tumor
0.6
285
Tumor
0.6
517
Tumor
0.6
737
Tumor
0.6
331
Tumor
0.6
537
Tumor
0.6
171
Tumor
0.5
411
Tumor
0.5
341
Tumor
0.5
553
Tumor
0.5
545
Tumor
0.5
727
Tumor
0.4
421
Tumor
0.4
467
Tumor
0.4
185
Tumor
0.3
127
Tumor
0.3
743
Tumor
0.3
963
Tumor
0.3
435
Tumor
0.3
1027
Tumor
0.3
186
Normal
0.3
937
Tumor
0.3
523
Tumor
0.3
533
Tumor
0.2
647
Tumor
0.2
423
Tumor
0.2
267
Tumor
0.2
393
Tumor
0.2
914
Normal
0.2
663
Tumor
0.2
146
Normal
0.2
497
Tumor
0.2
863
Tumor
0.2
132
Normal
0.2
912
Normal
0.1
455
Tumor
0.1
967
Tumor
0.1
358
Normal
0.1
878
Normal
0.1
414
Normal
0.1
277
Tumor
0.1
874
Normal
0.1
426
Normal
0.1
113
Tumor
0.1
866
Normal
0.1
361
Tumor
0.1
865
Tumor
0.1
698
Normal
0.1
354
Normal
0.1
721
Tumor
0.1
864
Normal
0.1
352
Normal
0.1
425
Tumor
0.1
882
Normal
0.1
665
Tumor
0.0
391
Tumor
0.0
883
Tumor
0.0
915
Tumor
0.0
862
Normal
0.0
447
Tumor
0.0
448
Normal
0.0
465
Tumor
0.0
852
Normal
0.0
123
Tumor
0.0
1026
Normal
0.0
452
Normal
0.0
428
Normal
0.0
877
Tumor
0.0
817
Tumor
0.0
538
Normal
0.0
858
Normal
0.0
1045
Tumor
0.0
445
Tumor
0.0
451
Tumor
0.0
742
Normal
0.0
148
Normal
0.0
713
Tumor
0.0
478
Normal
0.0
436
Normal
0.0
228
Normal
0.0
343
Tumor
0.0
286
Normal
-0.1
818
Normal
-0.1
376
Normal
-0.1
938
Normal
-0.1
666
Normal
-0.1
223
Tumor
-0.1
124
Normal
-0.1
424
Normal
-0.1
728
Normal
-0.1
975
Tumor
-0.1
546
Normal
-0.1
487
Tumor
-0.1
664
Normal
-0.1
571
Tumor
-0.1
112
Tumor
-0.1
313
Tumor
-0.1
187
Tumor
-0.1
257
Tumor
-0.1
368
Normal
-0.1
968
Normal
-0.1
483
Tumor
-0.1
493
Tumor
-0.1
824
Normal
-0.1
528
Normal
-0.1
416
Normal
-0.1
1013
Tumor
-0.1
978
Normal
-0.1
672
Normal
-0.1
481
Tumor
-0.1
356
Normal
-0.1
353
Tumor
-0.1
662
Normal
-0.1
137
Tumor
-0.1
142
Normal
-0.1
873
Tumor
-0.1
954
Normal
-0.1
232
Normal
-0.1
434
Normal
-0.1
642
Normal
-0.1
984
Normal
-0.1
297
Tumor
-0.1
332
Normal
-0.1
136
Normal
-0.1
648
Normal
-0.1
384
Normal
-0.2
944
Normal
-0.2
342
Normal
-0.2
357
Tumor
-0.2
422
Normal
-0.2
328
Normal
-0.2
884
Normal
-0.2
696
Normal
-0.2
816
Normal
-0.2
362
Normal
-0.2
498
Normal
-0.2
1046
Normal
-0.2
557
Tumor
-0.2
366
Normal
-0.2
385
Tumor
-0.2
982
Normal
-0.2
958
Normal
-0.2
221
Tumor
-0.2
738
Normal
-0.2
563
Tumor
-0.2
145
Tumor
-0.2
161
Tumor
-0.2
433
Tumor
-0.2
952
Normal
-0.2
431
Tumor
-0.2
913
Tumor
-0.2
128
Normal
-0.2
224
Normal
-0.2
636
Normal
-0.2
924
Normal
-0.2
867
Tumor
-0.2
412
Normal
-0.2
966
Normal
-0.2
745
Tumor
-0.2
1022
Normal
-0.2
284
Normal
-0.2
388
Normal
-0.2
722
Normal
-0.2
714
Normal
-0.2
956
Normal
-0.2
364
Normal
-0.2
298
Normal
-0.2
567
Tumor
-0.3
813
Tumor
-0.3
147
Tumor
-0.3
365
Tumor
-0.3
432
Normal
-0.3
272
Normal
-0.3
482
Normal
-0.3
138
Normal
-0.3
312
Normal
-0.3
814
Normal
-0.3
716
Normal
-0.3
162
Normal
-0.3
926
Normal
-0.3
392
Normal
-0.3
188
Normal
-0.3
262
Normal
-0.3
114
Normal
-0.3
344
Normal
-0.3
217
Tumor
-0.3
327
Tumor
-0.3
474
Normal
-0.3
618
Normal
-0.3
1014
Normal
-0.3
823
Tumor
-0.3
1028
Normal
-0.3
976
Normal
-0.3
1044
Normal
-0.3
868
Normal
-0.3
111
Normal
-0.3
723
Tumor
-0.3
494
Normal
-0.3
278
Normal
-0.3
314
Normal
-0.3
516
Normal
-0.3
383
Tumor
-0.3
922
Normal
-0.3
141
Tumor
-0.3
554
Normal
-0.3
965
Tumor
-0.3
573
Tumor
-0.3
724
Normal
-0.3
472
Normal
-0.3
741
Tumor
-0.3
214
Normal
-0.3
462
Normal
-0.3
715
Tumor
-0.4
515
Tumor
-0.4
1016
Normal
-0.4
461
Tumor
-0.4
415
Tumor
-0.4
568
Normal
-0.4
456
Normal
-0.4
534
Normal
-0.4
861
Tumor
-0.4
172
Normal
-0.4
881
Tumor
-0.4
468
Normal
-0.4
488
Normal
-0.4
386
Normal
-0.4
261
Tumor
-0.4
686
Normal
-0.4
446
Normal
-0.4
258
Normal
-0.4
746
Normal
-0.4
964
Normal
-0.4
572
Normal
-0.4
466
Normal
-0.4
918
Normal
-0.4
443
Tumor
-0.4
526
Normal
-0.4
957
Tumor
-0.4
394
Normal
-0.4
916
Normal
-0.4
955
Tumor
-0.4
778
Normal
-0.4
464
Normal
-0.4
564
Normal
-0.5
125
Tumor
-0.5
977
Tumor
-0.5
126
Normal
-0.5
195
Tumor
-0.5
1042
Normal
-0.5
857
Tumor
-0.5
191
Tumor
-0.5
492
Normal
-0.5
574
Normal
-0.5
212
Normal
-0.5
671
Tumor
-0.5
697
Tumor
-0.5
513
Tumor
-0.5
786
Normal
-0.5
396
Normal
-0.5
518
Normal
-0.6
756
Normal
-0.6
1032
Normal
-0.6
355
Tumor
-0.6
231
Tumor
-0.6
981
Tumor
-0.6
484
Normal
-0.6
213
Tumor
-0.6
911
Tumor
-0.6
616
Normal
-0.6
196
Normal
-0.6
755
Tumor
-0.6
268
Normal
-0.6
525
Tumor
-0.7
943
Tumor
-0.7
375
Tumor
-0.7
1015
Tumor
-0.7
218
Normal
-0.7
427
Tumor
-0.7
524
Normal
-0.7
558
Normal
-0.7
785
Tumor
-0.8
628
Normal
-0.8
514
Normal
-0.8
627
Tumor
-0.8
491
Tumor
-0.8
615
Tumor
-0.8
444
Normal
-0.8
283
Tumor
-0.8
527
Tumor
-0.8
222
Normal
-0.9
777
Tumor
-0.9
1041
Tumor
-0.9
192
Normal
-1.0
351
Tumor
-1.0
917
Tumor
-1.1
311
Tumor
-1.1
685
Tumor
-1.2
395
Tumor
-1.2
953
Tumor
-1.2
211
Tumor
-1.5
744
Normal
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
