We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALGAPA2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
45.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
29.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
22.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
15.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RALGAPA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
26.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
0.9
635
Tumor
0.8
743
Tumor
0.8
357
Tumor
0.7
671
Tumor
0.7
221
Tumor
0.7
123
Tumor
0.7
125
Tumor
0.6
465
Tumor
0.6
147
Tumor
0.6
411
Tumor
0.6
425
Tumor
0.5
491
Tumor
0.5
745
Tumor
0.5
921
Tumor
0.5
277
Tumor
0.5
777
Tumor
0.5
131
Tumor
0.5
435
Tumor
0.5
191
Tumor
0.5
545
Tumor
0.5
737
Tumor
0.5
533
Tumor
0.5
1021
Tumor
0.5
431
Tumor
0.4
497
Tumor
0.4
695
Tumor
0.4
663
Tumor
0.4
271
Tumor
0.4
351
Tumor
0.3
873
Tumor
0.3
112
Tumor
0.3
975
Tumor
0.3
455
Tumor
0.3
883
Tumor
0.3
483
Tumor
0.3
313
Tumor
0.3
881
Tumor
0.3
471
Tumor
0.3
127
Tumor
0.3
647
Tumor
0.3
331
Tumor
0.3
877
Tumor
0.3
755
Tumor
0.3
617
Tumor
0.3
171
Tumor
0.3
257
Tumor
0.3
395
Tumor
0.3
1045
Tumor
0.3
527
Tumor
0.3
1013
Tumor
0.2
785
Tumor
0.2
863
Tumor
0.2
1043
Tumor
0.2
523
Tumor
0.2
1031
Tumor
0.2
433
Tumor
0.2
742
Normal
0.2
567
Tumor
0.2
977
Tumor
0.2
113
Tumor
0.2
851
Tumor
0.2
343
Tumor
0.2
135
Tumor
0.2
128
Normal
0.2
278
Normal
0.2
375
Tumor
0.2
515
Tumor
0.2
423
Tumor
0.2
393
Tumor
0.2
353
Tumor
0.2
981
Tumor
0.2
297
Tumor
0.2
957
Tumor
0.2
114
Normal
0.2
298
Normal
0.2
421
Tumor
0.2
563
Tumor
0.2
124
Normal
0.2
111
Normal
0.2
222
Normal
0.1
573
Tumor
0.1
953
Tumor
0.1
738
Normal
0.1
218
Normal
0.1
513
Tumor
0.1
285
Tumor
0.1
332
Normal
0.1
267
Tumor
0.1
517
Tumor
0.1
778
Normal
0.1
314
Normal
0.1
1025
Tumor
0.1
217
Tumor
0.1
137
Tumor
0.1
823
Tumor
0.1
172
Normal
0.1
368
Normal
0.1
648
Normal
0.1
126
Normal
0.1
392
Normal
0.1
865
Tumor
0.1
195
Tumor
0.1
553
Tumor
0.1
358
Normal
0.1
713
Tumor
0.1
815
Tumor
0.1
196
Normal
0.1
723
Tumor
0.1
746
Normal
0.1
344
Normal
0.1
664
Normal
0.1
365
Tumor
0.1
186
Normal
0.1
666
Normal
0.1
913
Tumor
0.1
728
Normal
0.1
672
Normal
0.1
487
Tumor
0.1
925
Tumor
0.1
662
Normal
0.1
227
Tumor
0.1
327
Tumor
0.1
937
Tumor
0.1
354
Normal
0.1
446
Normal
0.1
342
Normal
0.1
428
Normal
0.1
214
Normal
0.1
1046
Normal
0.1
443
Tumor
0.1
1027
Tumor
0.1
461
Tumor
0.1
817
Tumor
0.1
426
Normal
0.1
721
Tumor
0.1
744
Normal
0.0
394
Normal
0.0
756
Normal
0.0
414
Normal
0.0
376
Normal
0.0
341
Tumor
0.0
432
Normal
0.0
424
Normal
0.0
665
Tumor
0.0
185
Tumor
0.0
727
Tumor
0.0
213
Tumor
0.0
162
Normal
0.0
436
Normal
0.0
361
Tumor
0.0
452
Normal
0.0
466
Normal
0.0
312
Normal
0.0
145
Tumor
0.0
384
Normal
0.0
571
Tumor
0.0
558
Normal
0.0
696
Normal
0.0
636
Normal
0.0
464
Normal
0.0
141
Tumor
0.0
132
Normal
0.0
136
Normal
0.0
686
Normal
0.0
864
Normal
0.0
261
Tumor
0.0
258
Normal
0.0
396
Normal
0.0
187
Tumor
0.0
422
Normal
0.0
232
Normal
0.0
528
Normal
0.0
456
Normal
0.0
494
Normal
0.0
427
Tumor
0.0
488
Normal
0.0
148
Normal
0.0
362
Normal
0.0
352
Normal
0.0
813
Tumor
0.0
484
Normal
0.0
447
Tumor
0.0
714
Normal
0.0
448
Normal
0.0
388
Normal
0.0
698
Normal
0.0
272
Normal
0.0
386
Normal
0.0
564
Normal
0.0
1044
Normal
0.0
228
Normal
0.0
363
Tumor
0.0
914
Normal
0.0
268
Normal
0.0
416
Normal
0.0
912
Normal
-0.1
262
Normal
-0.1
468
Normal
-0.1
328
Normal
-0.1
641
Tumor
-0.1
568
Normal
-0.1
642
Normal
-0.1
984
Normal
-0.1
546
Normal
-0.1
786
Normal
-0.1
142
Normal
-0.1
627
Tumor
-0.1
223
Tumor
-0.1
554
Normal
-0.1
518
Normal
-0.1
722
Normal
-0.1
192
Normal
-0.1
952
Normal
-0.1
188
Normal
-0.1
917
Tumor
-0.1
356
Normal
-0.1
146
Normal
-0.1
284
Normal
-0.1
618
Normal
-0.1
536
Normal
-0.1
516
Normal
-0.1
1022
Normal
-0.1
477
Tumor
-0.1
138
Normal
-0.1
628
Normal
-0.1
412
Normal
-0.1
697
Tumor
-0.1
498
Normal
-0.1
366
Normal
-0.1
534
Normal
-0.1
463
Tumor
-0.1
951
Tumor
-0.1
1014
Normal
-0.1
525
Tumor
-0.1
857
Tumor
-0.1
824
Normal
-0.1
286
Normal
-0.1
716
Normal
-0.1
574
Normal
-0.1
391
Tumor
-0.1
862
Normal
-0.1
741
Tumor
-0.1
866
Normal
-0.1
514
Normal
-0.1
982
Normal
-0.1
462
Normal
-0.1
526
Normal
-0.1
1016
Normal
-0.1
1026
Normal
-0.1
878
Normal
-0.1
444
Normal
-0.1
616
Normal
-0.1
212
Normal
-0.1
963
Tumor
-0.1
958
Normal
-0.1
557
Tumor
-0.1
538
Normal
-0.1
1028
Normal
-0.1
818
Normal
-0.1
364
Normal
-0.1
944
Normal
-0.1
874
Normal
-0.2
1015
Tumor
-0.2
918
Normal
-0.2
924
Normal
-0.2
572
Normal
-0.2
434
Normal
-0.2
493
Tumor
-0.2
858
Normal
-0.2
1032
Normal
-0.2
224
Normal
-0.2
311
Tumor
-0.2
852
Normal
-0.2
882
Normal
-0.2
524
Normal
-0.2
868
Normal
-0.2
474
Normal
-0.2
884
Normal
-0.2
816
Normal
-0.2
956
Normal
-0.2
537
Tumor
-0.2
938
Normal
-0.2
467
Tumor
-0.2
983
Tumor
-0.2
472
Normal
-0.2
978
Normal
-0.2
922
Normal
-0.2
966
Normal
-0.2
968
Normal
-0.2
926
Normal
-0.2
976
Normal
-0.2
916
Normal
-0.2
415
Tumor
-0.3
724
Normal
-0.3
481
Tumor
-0.3
814
Normal
-0.3
955
Tumor
-0.3
231
Tumor
-0.3
954
Normal
-0.3
482
Normal
-0.3
1042
Normal
-0.3
911
Tumor
-0.3
492
Normal
-0.3
964
Normal
-0.3
383
Tumor
-0.3
387
Tumor
-0.3
943
Tumor
-0.3
478
Normal
-0.3
967
Tumor
-0.3
355
Tumor
-0.3
615
Tumor
-0.3
385
Tumor
-0.4
161
Tumor
-0.4
535
Tumor
-0.4
965
Tumor
-0.4
283
Tumor
-0.4
473
Tumor
-0.4
685
Tumor
-0.4
861
Tumor
-0.4
451
Tumor
-0.4
367
Tumor
-0.5
413
Tumor
-0.5
1041
Tumor
-0.5
915
Tumor
-0.5
923
Tumor
-0.5
867
Tumor
-0.7
211
Tumor
-0.7
661
Tumor
-0.7
715
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
