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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NBR1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
117.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
115.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
106.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
105.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
104.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
100.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
91.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
89.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
89.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
88.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
87.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
85.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
85.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
84.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
78.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
76.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
76.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
73.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
73.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
70.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
69.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
67.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
64.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
64.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
63.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
62.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
61.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
61.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
59.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
59.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
58.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
57.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
57.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
56.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
55.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
54.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
53.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
52.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
52.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
51.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
50.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
49.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
48.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
48.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
48.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
46.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
46.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
45.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
45.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
44.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
44.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
43.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
43.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
43.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
43.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
42.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
41.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
41.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
41.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
40.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
40.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
40.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
40.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
40.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
39.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
39.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
39.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
39.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
39.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
39.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
37.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
37.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
37.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
37.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
37.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
37.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
36.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
36.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
36.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
36.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
35.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
35.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
34.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
33.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
33.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
32.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
32.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
32.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
32.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
32.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
31.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
31.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
31.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
30.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
30.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
30.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
30.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
30.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
29.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
29.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
29.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
29.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
28.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
28.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
28.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
27.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
27.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
27.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
26.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
25.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
25.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
25.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
24.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
24.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
23.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
22.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
22.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
21.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
20.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
20.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
20.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
19.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
19.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
19.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
15.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
15.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
14.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NBR1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.0
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
152.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
106.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
91.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
87.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
84.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
82.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
80.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
71.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
69.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
69.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
68.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
67.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
66.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
66.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
66.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
65.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
64.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
64.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
62.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
61.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
58.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
57.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
56.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
56.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
55.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
55.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
54.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
54.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
54.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
53.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
53.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
53.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
52.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
52.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
50.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
50.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
49.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
49.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
49.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
49.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
49.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
49.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
49.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
49.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
48.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
48.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
47.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
47.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
47.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
46.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
46.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
46.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
46.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
46.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
45.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
45.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
44.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
43.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
43.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
42.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
42.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
42.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
41.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
41.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
40.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
40.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
39.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
35.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
35.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
34.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
34.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
31.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
31.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
31.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
30.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
28.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
26.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
25.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
25.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
20.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
3.7
351
Tumor
2.6
741
Tumor
2.6
1041
Tumor
2.5
913
Tumor
2.5
911
Tumor
2.2
857
Tumor
1.9
267
Tumor
1.7
525
Tumor
1.4
1045
Tumor
1.3
375
Tumor
1.2
573
Tumor
1.1
413
Tumor
1.1
873
Tumor
1.1
427
Tumor
1.1
663
Tumor
1.0
393
Tumor
1.0
425
Tumor
0.9
493
Tumor
0.8
123
Tumor
0.8
415
Tumor
0.8
445
Tumor
0.7
343
Tumor
0.7
981
Tumor
0.7
1015
Tumor
0.7
477
Tumor
0.6
483
Tumor
0.6
145
Tumor
0.6
1013
Tumor
0.6
867
Tumor
0.6
617
Tumor
0.5
385
Tumor
0.5
191
Tumor
0.5
471
Tumor
0.5
363
Tumor
0.5
534
Normal
0.4
685
Tumor
0.3
112
Tumor
0.3
721
Tumor
0.3
491
Tumor
0.3
367
Tumor
0.3
357
Tumor
0.3
443
Tumor
0.2
545
Tumor
0.2
368
Normal
0.2
361
Tumor
0.2
975
Tumor
0.2
925
Tumor
0.1
755
Tumor
0.1
227
Tumor
0.1
554
Normal
0.1
696
Normal
0.1
528
Normal
0.1
391
Tumor
0.1
187
Tumor
0.1
353
Tumor
0.1
297
Tumor
0.1
967
Tumor
0.0
963
Tumor
0.0
571
Tumor
0.0
451
Tumor
0.0
546
Normal
0.0
388
Normal
0.0
494
Normal
0.0
553
Tumor
0.0
383
Tumor
0.0
473
Tumor
0.0
527
Tumor
0.0
535
Tumor
0.0
356
Normal
0.0
1031
Tumor
0.0
1021
Tumor
0.0
366
Normal
0.0
883
Tumor
0.0
448
Normal
0.0
661
Tumor
0.0
695
Tumor
0.0
214
Normal
0.0
431
Tumor
-0.1
697
Tumor
-0.1
488
Normal
-0.1
727
Tumor
-0.1
882
Normal
-0.1
411
Tumor
-0.1
384
Normal
-0.1
1025
Tumor
-0.1
362
Normal
-0.1
716
Normal
-0.1
127
Tumor
-0.1
538
Normal
-0.1
223
Tumor
-0.1
665
Tumor
-0.1
515
Tumor
-0.1
915
Tumor
-0.1
957
Tumor
-0.1
686
Normal
-0.1
912
Normal
-0.1
1042
Normal
-0.1
954
Normal
-0.1
221
Tumor
-0.1
376
Normal
-0.1
983
Tumor
-0.1
958
Normal
-0.1
478
Normal
-0.1
342
Normal
-0.1
662
Normal
-0.1
965
Tumor
-0.1
196
Normal
-0.1
923
Tumor
-0.1
352
Normal
-0.1
564
Normal
-0.2
435
Tumor
-0.2
213
Tumor
-0.2
257
Tumor
-0.2
262
Normal
-0.2
1027
Tumor
-0.2
392
Normal
-0.2
1032
Normal
-0.2
341
Tumor
-0.2
217
Tumor
-0.2
446
Normal
-0.2
186
Normal
-0.2
977
Tumor
-0.2
192
Normal
-0.2
884
Normal
-0.2
568
Normal
-0.2
465
Tumor
-0.2
492
Normal
-0.2
222
Normal
-0.2
636
Normal
-0.2
722
Normal
-0.2
268
Normal
-0.2
743
Tumor
-0.2
714
Normal
-0.2
355
Tumor
-0.2
396
Normal
-0.2
698
Normal
-0.2
938
Normal
-0.2
344
Normal
-0.2
536
Normal
-0.2
131
Tumor
-0.2
436
Normal
-0.2
572
Normal
-0.2
574
Normal
-0.2
258
Normal
-0.2
412
Normal
-0.2
484
Normal
-0.2
452
Normal
-0.2
231
Tumor
-0.3
272
Normal
-0.3
172
Normal
-0.3
746
Normal
-0.3
1046
Normal
-0.3
877
Tumor
-0.3
364
Normal
-0.3
953
Tumor
-0.3
124
Normal
-0.3
558
Normal
-0.3
161
Tumor
-0.3
278
Normal
-0.3
312
Normal
-0.3
426
Normal
-0.3
298
Normal
-0.3
354
Normal
-0.3
951
Tumor
-0.3
874
Normal
-0.3
218
Normal
-0.3
861
Tumor
-0.3
1014
Normal
-0.3
332
Normal
-0.3
468
Normal
-0.3
195
Tumor
-0.3
982
Normal
-0.3
724
Normal
-0.3
487
Tumor
-0.3
744
Normal
-0.3
984
Normal
-0.3
966
Normal
-0.3
497
Tumor
-0.3
738
Normal
-0.3
868
Normal
-0.3
648
Normal
-0.3
472
Normal
-0.3
285
Tumor
-0.3
666
Normal
-0.3
526
Normal
-0.3
865
Tumor
-0.3
428
Normal
-0.3
211
Tumor
-0.3
464
Normal
-0.3
394
Normal
-0.3
944
Normal
-0.3
777
Tumor
-0.3
474
Normal
-0.4
671
Tumor
-0.4
232
Normal
-0.4
432
Normal
-0.4
314
Normal
-0.4
444
Normal
-0.4
498
Normal
-0.4
742
Normal
-0.4
1028
Normal
-0.4
672
Normal
-0.4
878
Normal
-0.4
365
Tumor
-0.4
864
Normal
-0.4
1044
Normal
-0.4
817
Tumor
-0.4
424
Normal
-0.4
228
Normal
-0.4
171
Tumor
-0.4
921
Tumor
-0.4
862
Normal
-0.4
482
Normal
-0.4
328
Normal
-0.4
1026
Normal
-0.4
1022
Normal
-0.4
642
Normal
-0.4
261
Tumor
-0.4
162
Normal
-0.4
433
Tumor
-0.4
955
Tumor
-0.4
331
Tumor
-0.4
434
Normal
-0.4
616
Normal
-0.4
128
Normal
-0.4
641
Tumor
-0.4
563
Tumor
-0.4
1016
Normal
-0.4
185
Tumor
-0.4
863
Tumor
-0.4
358
Normal
-0.4
858
Normal
-0.4
277
Tumor
-0.4
517
Tumor
-0.4
416
Normal
-0.4
447
Tumor
-0.4
713
Tumor
-0.4
148
Normal
-0.4
111
Normal
-0.4
618
Normal
-0.4
922
Normal
-0.4
462
Normal
-0.4
968
Normal
-0.4
114
Normal
-0.4
271
Tumor
-0.4
952
Normal
-0.4
866
Normal
-0.5
917
Tumor
-0.5
422
Normal
-0.5
188
Normal
-0.5
523
Tumor
-0.5
126
Normal
-0.5
664
Normal
-0.5
125
Tumor
-0.5
113
Tumor
-0.5
956
Normal
-0.5
423
Tumor
-0.5
728
Normal
-0.5
737
Tumor
-0.5
386
Normal
-0.5
881
Tumor
-0.5
778
Normal
-0.5
852
Normal
-0.5
964
Normal
-0.5
918
Normal
-0.5
628
Normal
-0.5
456
Normal
-0.5
313
Tumor
-0.5
481
Tumor
-0.5
924
Normal
-0.5
518
Normal
-0.5
635
Tumor
-0.5
467
Tumor
-0.5
461
Tumor
-0.5
615
Tumor
-0.5
976
Normal
-0.5
557
Tumor
-0.6
815
Tumor
-0.6
414
Normal
-0.6
723
Tumor
-0.6
647
Tumor
-0.6
516
Normal
-0.6
286
Normal
-0.6
627
Tumor
-0.6
1043
Tumor
-0.6
978
Normal
-0.6
823
Tumor
-0.6
851
Tumor
-0.6
513
Tumor
-0.6
387
Tumor
-0.6
816
Normal
-0.6
926
Normal
-0.6
212
Normal
-0.7
138
Normal
-0.7
537
Tumor
-0.7
455
Tumor
-0.7
421
Tumor
-0.7
824
Normal
-0.7
311
Tumor
-0.7
715
Tumor
-0.7
466
Normal
-0.7
284
Normal
-0.7
463
Tumor
-0.7
943
Tumor
-0.7
756
Normal
-0.7
818
Normal
-0.7
745
Tumor
-0.7
224
Normal
-0.7
132
Normal
-0.8
147
Tumor
-0.8
395
Tumor
-0.8
916
Normal
-0.8
137
Tumor
-0.8
567
Tumor
-0.8
136
Normal
-0.8
141
Tumor
-0.9
786
Normal
-0.9
813
Tumor
-0.9
327
Tumor
-0.9
524
Normal
-0.9
142
Normal
-0.9
514
Normal
-1.0
146
Normal
-1.0
135
Tumor
-1.1
814
Normal
-1.1
785
Tumor
-1.1
937
Tumor
-1.1
283
Tumor
-1.2
914
Normal
-3.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
