HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:38.3 nTPM
HPA Brain:68.4 nTPM
GTEx:38.3 nTPM
FANTOM5:99.4 Scaled Tags Per Million
Pig:61.3 nTPM
Mouse:75.9 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022999Antibody HPA023999
Glial cells Not detectedHigh
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.4
Sample id Sample description nTPM
Hippocampus
nTPM: 65.0
2529 Female, age 94, left hemisphere 75.9
1898 Male, age 80, left hemisphere 66.2
1911 Female, age 85, right hemisphere 64.8
2148 Female, age 91, left hemisphere 64.5
2621 Female, age 67, right hemisphere 61.8
1855 Male, age 76, left hemisphere 57.1
Dentate gyrus
nTPM: 62.2
2528 Male, age 74, both hemispheres 70.9
2010 Male, age 76, both hemispheres 67.1
2530 Female, age 94, left hemisphere 66.4
2246 Female, age 85, both hemispheres 60.6
1927 Female, age 91, both hemispheres 56.8
2531 Female, age 67, both hemispheres 51.4
Entorhinal gyrus
nTPM: 61.5
2117 Female, age 91, right hemisphere 77.8
1938 Female, age 85, left hemisphere 62.9
2764 Male, age 80, right hemisphere 61.8
2686 Male, age 75, right hemisphere 59.9
2613 Female, age 94, left hemisphere 54.1
1787 Male, age 76, left hemisphere 52.7
Hippocampus, CA1
nTPM: 62.3
1873 Female, age 85, both hemispheres 67.8
2527 Male, age 74, both hemispheres 67.7
2749 Male, age 80, left hemisphere 61.9
2082 Female, age 91, right hemisphere 60.5
2045 Male, age 76, both hemispheres 53.7
Hippocampus, CA2
nTPM: 63.3
2249 Male, age 74, both hemispheres 71.8
1963 Male, age 80, left hemisphere 67.3
1940 Female, age 85, left hemisphere 63.9
2113 Female, age 91, right hemisphere 62.6
2437 Female, age 94, left hemisphere 58.1
1892 Male, age 76, both hemispheres 56.0
Hippocampus, CA3
nTPM: 61.2
1891 Female, age 85, both hemispheres 68.3
2436 Male, age 74, both hemispheres 67.4
1867 Male, age 76, both hemispheres 60.9
2620 Female, age 94, left hemisphere 59.8
2137 Male, age 80, left hemisphere 57.2
2861 Female, age 67, both hemispheres 53.4
Parahippocampal cortex
nTPM: 57.8
1850 Male, age 80, both hemispheres 65.7
2692 Male, age 74, both hemispheres 64.6
1990 Female, age 91, right hemisphere 62.5
2532 Female, age 72, left hemisphere 58.3
2018 Male, age 76, both hemispheres 57.0
1933 Female, age 85, both hemispheres 56.1
2250 Female, age 67, right hemisphere 54.7
2245 Female, age 91, both hemispheres 53.4
2693 Female, age 94, both hemispheres 53.3
2622 Female, age 67, right hemisphere 52.0
Perirhinal gyrus
nTPM: 58.0
1847 Female, age 91, left hemisphere 62.5
1794 Male, age 80, right hemisphere 61.9
1841 Female, age 85, right hemisphere 61.2
2521 Female, age 94, right hemisphere 55.3
2848 Male, age 76, right hemisphere 49.0
Subiculum
nTPM: 68.4
2438 Female, age 94, left hemisphere 72.4
2042 Male, age 76, both hemispheres 69.3
2729 Female, age 91, right hemisphere 68.9
1901 Male, age 80, both hemispheres 68.2
1977 Female, age 85, both hemispheres 66.2
2619 Male, age 74, both hemispheres 65.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 38.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.3
Samples: 197

Max nTPM: 77.7
Min nTPM: 20.9
Std nTPM: 8.7
Median nTPM: 36.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 77.7
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 68.1
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 60.8
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 58.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 57.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 56.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 56.5
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 55.9
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 53.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 52.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 52.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 99.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 99.4
FF:10153-102I9 76 years, female 102.3
FF:10169-103B7 60 years, female 96.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 61.3
Pig sample Sample description nTPM
Subiculum
nTPM: 55.3
Samples: 4

Max nTPM: 67.0
Min nTPM: 51.0
Sample A Female 67.0
Sample B Female 51.2
Sample C Male 52.1
Sample D Male 51.0
Dorsal hippocampus
nTPM: 61.3
Samples: 4

Max nTPM: 73.3
Min nTPM: 49.0
Sample A Female 73.3
Sample B Female 57.6
Sample C Male 65.1
Sample D Male 49.0
Entorhinal cortex
nTPM: 53.5
Samples: 4

Max nTPM: 57.9
Min nTPM: 46.9
Sample A Female 57.9
Sample B Female 56.0
Sample C Male 53.3
Sample D Male 46.9
Ventral hippocampus
nTPM: 57.0
Samples: 4

Max nTPM: 62.9
Min nTPM: 47.7
Sample A Female 54.7
Sample B Female 47.7
Sample C Male 62.9
Sample D Male 62.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 75.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 74.5
Samples: 4

Max nTPM: 76.4
Min nTPM: 71.4
Sample A Male 75.0
Sample B Male 71.4
Sample C Female 75.3
Sample D Female 76.4
Hippocampal formation
nTPM: 75.9
Samples: 4

Max nTPM: 81.8
Min nTPM: 67.0
Sample A Male 67.0
Sample B Male 79.2
Sample C Female 81.8
Sample D Female 75.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
1235 Antisense, RP_Baylor_102922, Mouse strain C57BL/6J (56 days, male) 1.0
1236 Antisense, RP_Baylor_102922, Mouse strain C57BL/6J (56 days, male) 0.0

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