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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERPINA5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
226.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1125.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1099.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1066.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1041.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1036.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1012.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
980.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
760.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
724.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
710.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
672.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
642.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
636.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
613.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
607.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
601.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
588.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
581.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
572.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
547.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
533.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
532.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
527.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
516.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
516.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
515.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
509.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
503.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
502.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
499.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
493.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
492.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
488.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
477.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
475.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
473.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
459.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
456.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
455.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
453.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
451.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
439.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
438.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
433.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
430.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
429.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
424.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
422.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
421.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
419.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
418.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
417.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
415.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
403.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
401.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
399.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
396.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
394.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
390.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
390.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
387.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
382.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
376.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
367.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
366.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
366.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
363.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
359.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
359.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
356.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
355.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
354.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
350.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
348.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
345.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
341.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
340.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
338.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
335.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
334.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
333.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
333.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
332.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
331.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
329.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
326.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
324.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
323.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
323.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
323.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
321.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
320.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
319.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
319.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
318.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
318.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
316.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
315.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
315.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
310.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
309.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
308.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
307.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
303.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
301.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
300.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
297.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
297.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
297.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
297.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
296.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
294.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
294.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
293.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
292.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
283.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
281.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
280.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
279.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
279.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
279.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
279.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
277.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
275.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
274.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
271.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
271.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
268.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
266.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
266.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
264.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
264.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
259.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
258.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
255.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
254.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
251.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
247.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
243.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
233.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
230.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
226.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
223.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
221.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
221.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
220.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
220.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
217.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
217.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
214.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
211.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
211.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
210.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
208.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
207.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
205.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
204.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
202.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
200.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
198.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
197.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
197.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
196.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
195.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
194.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
194.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
191.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
190.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
186.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
186.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
184.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
184.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
184.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
183.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
182.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
182.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
181.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
180.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
175.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
173.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
173.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
171.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
170.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
167.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
166.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
164.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
163.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
163.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
162.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
160.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
159.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
158.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
158.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
157.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
154.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
153.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
153.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
152.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
152.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
151.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
151.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
150.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
149.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
148.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
148.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
147.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
145.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
145.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
144.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
144.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
142.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
141.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
141.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
141.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
138.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
133.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
133.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
133.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
133.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
131.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
129.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
128.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
128.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
128.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
127.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
125.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
124.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
124.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
124.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
123.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
121.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
118.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
115.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
115.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
114.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
113.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
113.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
113.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
112.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
110.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
109.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
108.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
108.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
106.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
106.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
106.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
104.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
103.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
103.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
103.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
102.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
102.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
101.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
101.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
101.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
101.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
100.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
100.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
99.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
98.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
98.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
95.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
95.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
95.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
95.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
94.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
94.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
92.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
91.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
90.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
90.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
89.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
89.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
83.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
82.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
82.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
81.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
80.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
80.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
76.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
74.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
72.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
72.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
71.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
71.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
70.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
69.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
68.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
67.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
66.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
66.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
62.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
61.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
61.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
59.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
55.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
54.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
53.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
53.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
53.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
52.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
48.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
47.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
46.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
39.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
34.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
33.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
31.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SERPINA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
170.9
Number of samples
231
Samples
Sample
Description
TPM
DO45137
0 years, male, NA, stage:1, alive, 1320 days
726.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
671.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
580.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
564.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
564.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
512.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
508.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
503.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
492.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
487.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
486.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
461.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
457.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
453.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
441.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
440.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
438.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
434.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
431.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
425.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
409.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
408.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
406.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
400.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
392.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
388.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
376.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
375.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
373.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
368.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
356.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
343.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
328.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
310.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
302.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
290.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
287.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
285.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
284.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
279.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
277.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
276.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
271.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
271.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
271.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
268.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
267.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
263.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
261.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
250.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
249.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
249.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
242.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
242.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
241.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
235.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
234.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
231.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
229.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
228.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
228.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
228.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
225.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
221.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
221.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
220.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
219.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
216.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
216.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
214.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
213.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
212.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
209.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
201.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
200.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
197.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
197.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
195.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
192.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
191.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
190.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
189.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
187.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
185.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
181.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
176.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
176.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
175.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
171.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
168.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
166.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
166.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
166.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
163.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
162.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
160.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
160.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
159.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
152.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
152.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
152.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
151.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
147.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
145.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
144.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
143.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
138.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
137.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
137.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
135.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
132.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
132.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
129.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
126.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
125.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
123.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
123.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
123.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
121.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
119.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
119.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
119.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
118.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
117.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
114.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
114.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
114.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
112.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
112.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
110.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
109.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
108.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
108.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
108.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
107.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
106.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
104.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
103.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
103.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
102.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
102.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
100.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
99.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
98.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
98.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
95.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
94.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
94.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
92.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
92.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
91.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
91.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
91.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
90.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
90.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
89.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
89.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
88.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
87.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
85.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
85.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
84.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
84.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
82.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
82.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
79.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
78.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
78.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
77.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
75.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
73.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
73.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
73.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
71.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
71.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
71.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
69.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
68.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
63.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
63.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
62.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
61.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
60.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
60.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
58.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
56.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
45.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
41.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
40.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
30.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
26.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
2.4
743
Tumor
2.2
425
Tumor
2.1
343
Tumor
2.1
131
Tumor
1.7
463
Tumor
1.7
881
Tumor
1.5
393
Tumor
1.5
277
Tumor
1.4
445
Tumor
1.3
471
Tumor
1.2
227
Tumor
1.2
813
Tumor
1.2
297
Tumor
1.2
363
Tumor
1.1
921
Tumor
1.1
713
Tumor
1.1
877
Tumor
1.0
817
Tumor
1.0
777
Tumor
1.0
671
Tumor
0.9
221
Tumor
0.9
271
Tumor
0.9
455
Tumor
0.9
545
Tumor
0.8
815
Tumor
0.8
975
Tumor
0.7
515
Tumor
0.7
697
Tumor
0.7
331
Tumor
0.7
527
Tumor
0.7
517
Tumor
0.7
663
Tumor
0.7
641
Tumor
0.7
385
Tumor
0.7
112
Tumor
0.6
1027
Tumor
0.6
1045
Tumor
0.6
137
Tumor
0.5
523
Tumor
0.4
635
Tumor
0.4
365
Tumor
0.4
967
Tumor
0.4
162
Normal
0.4
444
Normal
0.4
727
Tumor
0.4
883
Tumor
0.4
443
Tumor
0.4
223
Tumor
0.4
394
Normal
0.4
357
Tumor
0.4
572
Normal
0.4
148
Normal
0.4
132
Normal
0.3
742
Normal
0.3
192
Normal
0.3
147
Tumor
0.3
964
Normal
0.3
664
Normal
0.3
314
Normal
0.3
482
Normal
0.3
814
Normal
0.3
818
Normal
0.3
882
Normal
0.3
388
Normal
0.3
823
Tumor
0.3
461
Tumor
0.3
436
Normal
0.3
497
Tumor
0.3
745
Tumor
0.3
963
Tumor
0.3
413
Tumor
0.2
695
Tumor
0.2
387
Tumor
0.2
648
Normal
0.2
452
Normal
0.2
257
Tumor
0.2
464
Normal
0.2
432
Normal
0.2
862
Normal
0.2
716
Normal
0.2
186
Normal
0.2
786
Normal
0.2
196
Normal
0.2
426
Normal
0.2
785
Tumor
0.2
1046
Normal
0.2
141
Tumor
0.2
268
Normal
0.2
285
Tumor
0.2
311
Tumor
0.2
737
Tumor
0.2
472
Normal
0.2
983
Tumor
0.2
428
Normal
0.2
723
Tumor
0.2
355
Tumor
0.2
864
Normal
0.2
298
Normal
0.2
884
Normal
0.2
878
Normal
0.2
456
Normal
0.2
874
Normal
0.2
516
Normal
0.1
364
Normal
0.1
1032
Normal
0.1
172
Normal
0.1
1025
Tumor
0.1
484
Normal
0.1
396
Normal
0.1
1042
Normal
0.1
615
Tumor
0.1
714
Normal
0.1
188
Normal
0.1
135
Tumor
0.1
278
Normal
0.1
666
Normal
0.1
367
Tumor
0.1
185
Tumor
0.1
195
Tumor
0.1
865
Tumor
0.1
447
Tumor
0.1
1041
Tumor
0.1
1043
Tumor
0.1
222
Normal
0.1
526
Normal
0.1
618
Normal
0.1
857
Tumor
0.1
423
Tumor
0.1
356
Normal
0.1
431
Tumor
0.1
514
Normal
0.1
375
Tumor
0.1
421
Tumor
0.1
424
Normal
0.1
938
Normal
0.1
462
Normal
0.1
744
Normal
0.1
958
Normal
0.1
358
Normal
0.1
328
Normal
0.1
1022
Normal
0.1
414
Normal
0.1
943
Tumor
0.1
224
Normal
0.0
553
Tumor
0.0
627
Tumor
0.0
342
Normal
0.0
816
Normal
0.0
136
Normal
0.0
422
Normal
0.0
361
Tumor
0.0
866
Normal
0.0
756
Normal
0.0
272
Normal
0.0
435
Tumor
0.0
392
Normal
0.0
954
Normal
0.0
546
Normal
0.0
982
Normal
0.0
258
Normal
0.0
824
Normal
0.0
918
Normal
0.0
386
Normal
0.0
312
Normal
0.0
354
Normal
0.0
466
Normal
0.0
341
Tumor
0.0
146
Normal
0.0
142
Normal
0.0
474
Normal
0.0
922
Normal
0.0
128
Normal
0.0
636
Normal
0.0
778
Normal
0.0
125
Tumor
0.0
912
Normal
0.0
376
Normal
0.0
1016
Normal
0.0
755
Tumor
0.0
362
Normal
0.0
344
Normal
0.0
483
Tumor
0.0
451
Tumor
0.0
616
Normal
0.0
384
Normal
0.0
187
Tumor
0.0
698
Normal
0.0
738
Normal
0.0
416
Normal
0.0
332
Normal
0.0
232
Normal
0.0
914
Normal
0.0
662
Normal
-0.1
446
Normal
-0.1
478
Normal
-0.1
126
Normal
-0.1
534
Normal
-0.1
366
Normal
-0.1
481
Tumor
-0.1
448
Normal
-0.1
111
Normal
-0.1
923
Tumor
-0.1
391
Tumor
-0.1
498
Normal
-0.1
518
Normal
-0.1
563
Tumor
-0.1
465
Tumor
-0.1
412
Normal
-0.1
468
Normal
-0.1
672
Normal
-0.1
741
Tumor
-0.1
728
Normal
-0.1
433
Tumor
-0.1
1021
Tumor
-0.1
114
Normal
-0.1
696
Normal
-0.1
926
Normal
-0.1
313
Tumor
-0.1
554
Normal
-0.1
161
Tumor
-0.1
571
Tumor
-0.1
564
Normal
-0.1
528
Normal
-0.1
1014
Normal
-0.1
746
Normal
-0.1
415
Tumor
-0.1
873
Tumor
-0.2
977
Tumor
-0.2
568
Normal
-0.2
956
Normal
-0.2
628
Normal
-0.2
574
Normal
-0.2
145
Tumor
-0.2
124
Normal
-0.2
494
Normal
-0.2
858
Normal
-0.2
924
Normal
-0.2
212
Normal
-0.2
968
Normal
-0.2
138
Normal
-0.2
368
Normal
-0.2
525
Tumor
-0.2
617
Tumor
-0.2
868
Normal
-0.2
524
Normal
-0.2
286
Normal
-0.2
473
Tumor
-0.2
1028
Normal
-0.2
218
Normal
-0.2
228
Normal
-0.2
852
Normal
-0.3
262
Normal
-0.3
284
Normal
-0.3
944
Normal
-0.3
1026
Normal
-0.3
913
Tumor
-0.3
467
Tumor
-0.3
976
Normal
-0.3
1044
Normal
-0.3
722
Normal
-0.3
214
Normal
-0.3
513
Tumor
-0.3
953
Tumor
-0.3
127
Tumor
-0.3
951
Tumor
-0.3
952
Normal
-0.3
642
Normal
-0.3
353
Tumor
-0.3
352
Normal
-0.4
647
Tumor
-0.4
984
Normal
-0.4
978
Normal
-0.4
966
Normal
-0.4
213
Tumor
-0.4
721
Tumor
-0.4
434
Normal
-0.4
217
Tumor
-0.4
917
Tumor
-0.4
538
Normal
-0.4
558
Normal
-0.4
955
Tumor
-0.4
171
Tumor
-0.4
916
Normal
-0.4
488
Normal
-0.4
493
Tumor
-0.4
492
Normal
-0.4
383
Tumor
-0.4
191
Tumor
-0.4
477
Tumor
-0.4
533
Tumor
-0.4
937
Tumor
-0.4
283
Tumor
-0.4
261
Tumor
-0.5
327
Tumor
-0.5
1031
Tumor
-0.5
665
Tumor
-0.5
911
Tumor
-0.5
411
Tumor
-0.5
427
Tumor
-0.5
395
Tumor
-0.5
536
Normal
-0.6
915
Tumor
-0.6
686
Normal
-0.6
113
Tumor
-0.6
981
Tumor
-0.6
535
Tumor
-0.6
861
Tumor
-0.6
573
Tumor
-0.6
267
Tumor
-0.6
487
Tumor
-0.6
661
Tumor
-0.6
1015
Tumor
-0.7
965
Tumor
-0.7
867
Tumor
-0.7
1013
Tumor
-0.7
715
Tumor
-0.7
211
Tumor
-0.8
957
Tumor
-0.8
724
Normal
-0.8
851
Tumor
-0.9
537
Tumor
-0.9
491
Tumor
-0.9
925
Tumor
-0.9
567
Tumor
-0.9
231
Tumor
-1.0
123
Tumor
-1.1
351
Tumor
-1.1
557
Tumor
-1.2
685
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.