We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TUBB4B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
134.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
795.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
646.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
574.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
439.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
413.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
404.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
400.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
391.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
380.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
342.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
341.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
339.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
334.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
332.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
323.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
322.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
319.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
307.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
304.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
298.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
289.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
289.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
279.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
279.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
264.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
264.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
262.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
258.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
256.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
256.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
256.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
255.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
247.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
240.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
239.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
231.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
227.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
225.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
224.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
222.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
210.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
209.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
208.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
205.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
204.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
204.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
203.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
202.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
199.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
199.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
197.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
197.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
193.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
193.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
192.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
191.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
188.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
184.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
183.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
183.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
181.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
181.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
178.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
178.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
176.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
176.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
176.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
175.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
175.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
173.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
173.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
172.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
172.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
168.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
168.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
168.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
166.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
165.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
165.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
165.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
164.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
164.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
163.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
163.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
162.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
162.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
162.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
162.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
161.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
160.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
159.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
159.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
158.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
158.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
158.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
155.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
155.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
155.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
151.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
149.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
149.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
149.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
148.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
147.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
147.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
147.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
146.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
146.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
145.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
144.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
144.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
143.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
143.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
142.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
142.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
141.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
141.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
141.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
139.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
138.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
137.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
137.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
137.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
137.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
135.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
135.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
134.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
134.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
133.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
133.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
131.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
131.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
130.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
130.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
129.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
129.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
128.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
128.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
128.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
127.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
127.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
126.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
125.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
125.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
125.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
125.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
125.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
124.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
124.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
123.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
122.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
121.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
121.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
121.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
119.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
119.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
119.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
118.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
118.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
118.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
118.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
118.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
117.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
117.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
116.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
115.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
115.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
115.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
115.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
115.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
115.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
115.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
115.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
114.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
114.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
114.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
114.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
114.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
113.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
113.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
113.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
113.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
112.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
112.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
112.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
112.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
111.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
111.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
110.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
109.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
108.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
108.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
108.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
108.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
108.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
108.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
107.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
107.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
106.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
106.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
106.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
105.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
105.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
104.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
104.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
104.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
103.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
103.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
103.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
103.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
103.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
102.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
102.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
101.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
99.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
99.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
99.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
99.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
99.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
99.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
99.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
98.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
98.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
98.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
98.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
98.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
97.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
97.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
96.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
96.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
96.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
96.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
95.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
95.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
94.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
93.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
93.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
93.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
92.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
92.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
91.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
91.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
90.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
90.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
89.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
89.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
88.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
88.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
88.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
88.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
87.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
87.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
87.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
86.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
86.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
85.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
85.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
85.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
85.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
84.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
84.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
83.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
83.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
82.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
82.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
82.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
82.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
81.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
81.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
81.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
81.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
81.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
80.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
80.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
80.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
80.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
80.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
80.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
80.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
79.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
79.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
79.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
79.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
78.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
78.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
78.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
78.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
77.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
75.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
75.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
75.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
74.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
74.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
74.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
73.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
73.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
72.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
72.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
72.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
72.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
72.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
72.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
71.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
71.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
71.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
71.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
69.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
69.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
69.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
67.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
67.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
65.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
64.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
64.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
64.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
63.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
63.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
62.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
62.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
62.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
60.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
56.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
56.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
55.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
54.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
54.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
53.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
52.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
51.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
50.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
50.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
49.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
47.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
47.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
43.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
43.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
43.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
42.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
36.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
30.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
125
Tumor
0.6
463
Tumor
0.5
351
Tumor
0.5
277
Tumor
0.4
365
Tumor
0.4
313
Tumor
0.4
663
Tumor
0.4
161
Tumor
0.4
743
Tumor
0.3
627
Tumor
0.3
231
Tumor
0.3
661
Tumor
0.3
567
Tumor
0.3
135
Tumor
0.3
427
Tumor
0.3
375
Tumor
0.3
171
Tumor
0.3
123
Tumor
0.3
435
Tumor
0.3
343
Tumor
0.3
385
Tumor
0.2
444
Normal
0.2
367
Tumor
0.2
813
Tumor
0.2
414
Normal
0.2
671
Tumor
0.2
195
Tumor
0.2
257
Tumor
0.2
222
Normal
0.2
126
Normal
0.2
411
Tumor
0.2
424
Normal
0.2
391
Tumor
0.2
911
Tumor
0.2
464
Normal
0.2
423
Tumor
0.2
192
Normal
0.2
386
Normal
0.2
394
Normal
0.2
141
Tumor
0.2
436
Normal
0.2
451
Tumor
0.2
185
Tumor
0.2
114
Normal
0.2
188
Normal
0.2
132
Normal
0.2
272
Normal
0.2
217
Tumor
0.2
445
Tumor
0.2
268
Normal
0.2
432
Normal
0.2
331
Tumor
0.2
267
Tumor
0.2
283
Tumor
0.2
278
Normal
0.2
357
Tumor
0.2
162
Normal
0.1
127
Tumor
0.1
297
Tumor
0.1
434
Normal
0.1
172
Normal
0.1
341
Tumor
0.1
413
Tumor
0.1
741
Tumor
0.1
615
Tumor
0.1
393
Tumor
0.1
358
Normal
0.1
353
Tumor
0.1
186
Normal
0.1
428
Normal
0.1
983
Tumor
0.1
446
Normal
0.1
136
Normal
0.1
815
Tumor
0.1
113
Tumor
0.1
271
Tumor
0.1
465
Tumor
0.1
777
Tumor
0.1
148
Normal
0.1
344
Normal
0.1
124
Normal
0.1
138
Normal
0.1
881
Tumor
0.1
456
Normal
0.1
468
Normal
0.1
312
Normal
0.1
467
Tumor
0.1
147
Tumor
0.1
388
Normal
0.1
262
Normal
0.1
396
Normal
0.1
112
Tumor
0.1
455
Tumor
0.1
111
Normal
0.1
814
Normal
0.1
191
Tumor
0.1
145
Tumor
0.1
314
Normal
0.1
648
Normal
0.1
422
Normal
0.1
666
Normal
0.1
258
Normal
0.1
366
Normal
0.1
342
Normal
0.1
745
Tumor
0.1
332
Normal
0.1
196
Normal
0.1
354
Normal
0.1
452
Normal
0.1
571
Tumor
0.1
361
Tumor
0.1
574
Normal
0.1
426
Normal
0.1
213
Tumor
0.1
563
Tumor
0.1
461
Tumor
0.1
664
Normal
0.1
221
Tumor
0.1
137
Tumor
0.1
387
Tumor
0.1
223
Tumor
0.1
368
Normal
0.0
352
Normal
0.0
662
Normal
0.0
443
Tumor
0.0
395
Tumor
0.0
218
Normal
0.0
214
Normal
0.0
617
Tumor
0.0
376
Normal
0.0
568
Normal
0.0
863
Tumor
0.0
362
Normal
0.0
421
Tumor
0.0
462
Normal
0.0
641
Tumor
0.0
384
Normal
0.0
392
Normal
0.0
564
Normal
0.0
925
Tumor
0.0
425
Tumor
0.0
285
Tumor
0.0
447
Tumor
0.0
642
Normal
0.0
665
Tumor
0.0
877
Tumor
0.0
311
Tumor
0.0
868
Normal
0.0
713
Tumor
0.0
786
Normal
0.0
146
Normal
0.0
824
Normal
0.0
298
Normal
0.0
433
Tumor
0.0
383
Tumor
0.0
466
Normal
0.0
128
Normal
0.0
914
Normal
0.0
737
Tumor
0.0
187
Tumor
0.0
738
Normal
0.0
573
Tumor
0.0
724
Normal
0.0
937
Tumor
0.0
491
Tumor
0.0
618
Normal
0.0
628
Normal
0.0
913
Tumor
0.0
232
Normal
0.0
744
Normal
0.0
286
Normal
0.0
1015
Tumor
0.0
884
Normal
0.0
431
Tumor
0.0
224
Normal
0.0
874
Normal
0.0
967
Tumor
0.0
227
Tumor
-0.1
1016
Normal
-0.1
817
Tumor
-0.1
557
Tumor
-0.1
746
Normal
-0.1
742
Normal
-0.1
636
Normal
-0.1
858
Normal
-0.1
327
Tumor
-0.1
515
Tumor
-0.1
727
Tumor
-0.1
497
Tumor
-0.1
851
Tumor
-0.1
921
Tumor
-0.1
873
Tumor
-0.1
943
Tumor
-0.1
616
Normal
-0.1
672
Normal
-0.1
284
Normal
-0.1
816
Normal
-0.1
695
Tumor
-0.1
882
Normal
-0.1
356
Normal
-0.1
878
Normal
-0.1
363
Tumor
-0.1
416
Normal
-0.1
883
Tumor
-0.1
977
Tumor
-0.1
482
Normal
-0.1
647
Tumor
-0.1
982
Normal
-0.1
866
Normal
-0.1
558
Normal
-0.1
472
Normal
-0.1
513
Tumor
-0.1
818
Normal
-0.1
1013
Tumor
-0.1
635
Tumor
-0.1
865
Tumor
-0.1
1021
Tumor
-0.1
952
Normal
-0.1
722
Normal
-0.1
537
Tumor
-0.1
984
Normal
-0.1
572
Normal
-0.1
916
Normal
-0.1
228
Normal
-0.1
721
Tumor
-0.2
912
Normal
-0.2
523
Tumor
-0.2
728
Normal
-0.2
867
Tumor
-0.2
857
Tumor
-0.2
955
Tumor
-0.2
778
Normal
-0.2
755
Tumor
-0.2
978
Normal
-0.2
723
Tumor
-0.2
864
Normal
-0.2
1044
Normal
-0.2
261
Tumor
-0.2
528
Normal
-0.2
714
Normal
-0.2
917
Tumor
-0.2
478
Normal
-0.2
212
Normal
-0.2
963
Tumor
-0.2
474
Normal
-0.2
923
Tumor
-0.2
965
Tumor
-0.2
142
Normal
-0.2
861
Tumor
-0.2
364
Normal
-0.2
966
Normal
-0.2
487
Tumor
-0.2
852
Normal
-0.2
1043
Tumor
-0.2
1028
Normal
-0.2
685
Tumor
-0.3
131
Tumor
-0.3
525
Tumor
-0.3
926
Normal
-0.3
938
Normal
-0.3
975
Tumor
-0.3
785
Tumor
-0.3
518
Normal
-0.3
716
Normal
-0.3
481
Tumor
-0.3
328
Normal
-0.3
488
Normal
-0.3
538
Normal
-0.3
956
Normal
-0.3
976
Normal
-0.3
533
Tumor
-0.3
968
Normal
-0.3
756
Normal
-0.3
918
Normal
-0.3
526
Normal
-0.3
471
Tumor
-0.3
492
Normal
-0.3
862
Normal
-0.3
412
Normal
-0.3
535
Tumor
-0.3
915
Tumor
-0.3
546
Normal
-0.3
498
Normal
-0.3
1026
Normal
-0.3
1027
Tumor
-0.3
545
Tumor
-0.3
964
Normal
-0.3
1045
Tumor
-0.3
981
Tumor
-0.3
944
Normal
-0.3
534
Normal
-0.3
953
Tumor
-0.3
715
Tumor
-0.3
1022
Normal
-0.3
527
Tumor
-0.3
483
Tumor
-0.3
493
Tumor
-0.3
954
Normal
-0.3
686
Normal
-0.3
696
Normal
-0.3
1014
Normal
-0.3
477
Tumor
-0.3
1042
Normal
-0.3
697
Tumor
-0.3
494
Normal
-0.3
951
Tumor
-0.4
1041
Tumor
-0.4
924
Normal
-0.4
1046
Normal
-0.4
514
Normal
-0.4
922
Normal
-0.4
698
Normal
-0.4
823
Tumor
-0.4
1025
Tumor
-0.4
211
Tumor
-0.4
415
Tumor
-0.4
1032
Normal
-0.4
448
Normal
-0.4
484
Normal
-0.4
355
Tumor
-0.4
536
Normal
-0.4
516
Normal
-0.4
957
Tumor
-0.4
524
Normal
-0.5
958
Normal
-0.5
1031
Tumor
-0.5
554
Normal
-0.5
517
Tumor
-0.5
473
Tumor
-0.7
553
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.