MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:16.6 nTPM
GTEx:3.7 nTPM
FANTOM5:43.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.1
1870 Female, age 42, unknown 18.2
1833 Male, age 53, unknown 18.0
2586 Male, age 75, left hemisphere 16.8
1830 Male, age 51, unknown 16.4
2411 Female, age 72, unknown 16.4
2019 Male, age 18, unknown 16.3
2219 Male, age 76, both hemispheres 15.5
1827 Male, age 72, unknown 15.1
2666 Male, age 74, left hemisphere 14.6
2828 Female, age 72, unknown 13.5
Dorsal raphe nucleus
nTPM: 14.9
2750 Male, age 76, both hemispheres 17.0
2016 Female, age 72, unknown 15.5
2047 Male, age 72, unknown 15.3
1828 Male, age 53, unknown 13.7
2298 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 16.0
2849 Male, age 72, unknown 16.9
1848 Female, age 42, unknown 16.1
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 15.5
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Periaquaductal grey, anterior
nTPM: 16.2
1947 Male, age 18, unknown 18.5
2502 Female, age 75, unknown 16.0
1795 Male, age 51, unknown 14.2
Periaquaductal grey, dorsal
nTPM: 15.8
1840 Male, age 53, unknown 17.1
2850 Male, age 76, both hemispheres 15.7
2464 Female, age 72, unknown 15.2
1831 Male, age 72, unknown 15.0
Periaquaductal grey, lateral
nTPM: 15.5
2272 Male, age 74, both hemispheres 16.1
2140 Male, age 76, both hemispheres 15.6
2053 Male, age 18, unknown 14.9
Pretectal area
nTPM: 16.6
2273 Male, age 74, both hemispheres 18.4
1817 Female, age 42, unknown 17.9
1815 Male, age 53, unknown 17.4
2667 Female, age 75, unknown 17.4
2007 Male, age 72, unknown 17.1
2224 Female, age 72, unknown 17.1
1816 Male, age 51, unknown 16.1
1944 Female, age 72, unknown 15.4
2825 Male, age 18, unknown 15.4
2407 Male, age 75, both hemispheres 15.2
2316 Male, age 76, right hemisphere 14.7
Red nucleus
nTPM: 16.5
2503 Female, age 72, unknown 19.0
1821 Female, age 72, unknown 18.2
1904 Male, age 53, unknown 18.0
1865 Male, age 51, unknown 17.9
1954 Female, age 42, unknown 17.2
2823 Male, age 76, right hemisphere 17.0
2769 Male, age 72, unknown 15.9
2725 Female, age 75, unknown 15.6
2785 Male, age 18, unknown 15.4
2588 Male, age 74, left hemisphere 14.8
2227 Male, age 72, unknown 14.5
2584 Male, age 75, left hemisphere 14.1
Substantia nigra
nTPM: 15.7
2409 Female, age 72, unknown 18.1
1889 Female, age 72, unknown 17.1
1941 Male, age 53, unknown 16.5
2583 Male, age 75, right hemisphere 16.4
2241 Male, age 72, unknown 16.3
2699 Male, age 18, unknown 15.7
1851 Male, age 51, unknown 15.3
2590 Female, age 75, unknown 14.8
1916 Female, age 42, unknown 13.6
2665 Male, age 74, both hemispheres 13.6
Superior colliculus
nTPM: 15.5
1995 Male, age 72, unknown 17.1
1913 Female, age 42, unknown 16.6
2668 Female, age 75, unknown 16.5
1839 Male, age 51, unknown 16.3
1895 Male, age 76, right hemisphere 16.2
2261 Male, age 18, unknown 15.7
2664 Male, age 75, both hemispheres 15.2
2587 Male, age 74, left hemisphere 15.0
2087 Female, age 72, unknown 14.7
1796 Male, age 53, unknown 12.2
Ventral tegmental area
nTPM: 14.2
2218 Male, age 76, both hemispheres 14.6
1942 Male, age 51, unknown 14.5
2223 Female, age 72, unknown 14.4
1915 Female, age 42, unknown 14.2
2410 Female, age 72, unknown 14.2
2021 Male, age 53, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 7.6
Min nTPM: 1.8
Std nTPM: 0.9
Median nTPM: 3.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 6.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 5.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 5.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 5.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 5.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 5.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 5.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

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