MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA Brain:10.5 nTPM
GTEx:8.5 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:20.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 10.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.6
2586 Male, age 75, left hemisphere 16.0
2019 Male, age 18, unknown 10.4
2411 Female, age 72, unknown 9.5
1870 Female, age 42, unknown 8.4
2828 Female, age 72, unknown 8.2
1833 Male, age 53, unknown 7.5
1827 Male, age 72, unknown 7.0
2219 Male, age 76, both hemispheres 6.6
1830 Male, age 51, unknown 6.3
2666 Male, age 74, left hemisphere 5.9
Dorsal raphe nucleus
nTPM: 8.3
2750 Male, age 76, both hemispheres 11.7
2047 Male, age 72, unknown 10.0
2016 Female, age 72, unknown 8.2
1828 Male, age 53, unknown 7.0
2298 Female, age 72, unknown 4.7
Inferior colliculus
nTPM: 8.4
1890 Male, age 53, unknown 11.6
2097 Female, age 72, unknown 8.2
1848 Female, age 42, unknown 7.0
2849 Male, age 72, unknown 7.0
Median raphe nucleus
nTPM: 7.4
2220 Male, age 76, midline 7.4
Periaquaductal grey, anterior
nTPM: 10.5
1795 Male, age 51, unknown 14.0
2502 Female, age 75, unknown 8.9
1947 Male, age 18, unknown 8.5
Periaquaductal grey, dorsal
nTPM: 6.1
1840 Male, age 53, unknown 7.0
2464 Female, age 72, unknown 6.9
1831 Male, age 72, unknown 5.7
2850 Male, age 76, both hemispheres 4.6
Periaquaductal grey, lateral
nTPM: 7.3
2140 Male, age 76, both hemispheres 8.7
2272 Male, age 74, both hemispheres 7.7
2053 Male, age 18, unknown 5.5
Pretectal area
nTPM: 8.3
2007 Male, age 72, unknown 13.3
2407 Male, age 75, both hemispheres 9.5
2316 Male, age 76, right hemisphere 9.3
2273 Male, age 74, both hemispheres 8.8
1815 Male, age 53, unknown 8.4
2667 Female, age 75, unknown 8.4
1944 Female, age 72, unknown 7.7
1816 Male, age 51, unknown 6.6
2224 Female, age 72, unknown 6.5
1817 Female, age 42, unknown 6.2
2825 Male, age 18, unknown 6.0
Red nucleus
nTPM: 8.2
2769 Male, age 72, unknown 12.7
2785 Male, age 18, unknown 11.1
2227 Male, age 72, unknown 10.6
1904 Male, age 53, unknown 8.9
2503 Female, age 72, unknown 8.2
2588 Male, age 74, left hemisphere 8.1
2584 Male, age 75, left hemisphere 7.5
2823 Male, age 76, right hemisphere 7.4
1954 Female, age 42, unknown 7.3
2725 Female, age 75, unknown 6.4
1821 Female, age 72, unknown 5.6
1865 Male, age 51, unknown 4.1
Substantia nigra
nTPM: 7.1
1889 Female, age 72, unknown 10.3
1916 Female, age 42, unknown 8.8
1851 Male, age 51, unknown 8.5
2583 Male, age 75, right hemisphere 8.4
2665 Male, age 74, both hemispheres 8.1
1941 Male, age 53, unknown 7.8
2590 Female, age 75, unknown 7.2
2699 Male, age 18, unknown 5.6
2409 Female, age 72, unknown 3.2
2241 Male, age 72, unknown 2.6
Superior colliculus
nTPM: 8.1
2664 Male, age 75, both hemispheres 13.0
2261 Male, age 18, unknown 10.6
2668 Female, age 75, unknown 9.7
1839 Male, age 51, unknown 9.0
1895 Male, age 76, right hemisphere 8.0
2587 Male, age 74, left hemisphere 7.3
1913 Female, age 42, unknown 6.3
2087 Female, age 72, unknown 6.3
1995 Male, age 72, unknown 5.6
1796 Male, age 53, unknown 4.9
Ventral tegmental area
nTPM: 7.5
1942 Male, age 51, unknown 10.4
1915 Female, age 42, unknown 10.2
2218 Male, age 76, both hemispheres 8.1
2021 Male, age 53, unknown 6.0
2223 Female, age 72, unknown 5.3
2410 Female, age 72, unknown 5.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.5
Samples: 139

Max nTPM: 18.3
Min nTPM: 0.5
Std nTPM: 3.4
Median nTPM: 8.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 18.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 17.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 16.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 16.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 14.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 14.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 14.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 14.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 13.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 13.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 13.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 24.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 25.9
Min nTPM: 20.1
Sample A Female 25.9
Sample B Female 20.6
Sample C Male 20.1
Sample D Male 22.9
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 27.6
Min nTPM: 20.4
Sample A Female 27.6
Sample B Female 20.4
Sample C Male 24.9
Sample D Male 24.5
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 22.6
Min nTPM: 20.9
Sample B Female 21.0
Sample C Male 22.6
Sample D Male 20.9
Superior colliculi
nTPM: 24.8
Samples: 4

Max nTPM: 26.6
Min nTPM: 22.3
Sample A Female 25.8
Sample B Female 24.3
Sample C Male 22.3
Sample D Male 26.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 23.8
Min nTPM: 17.8
Sample A Male 23.8
Sample B Male 19.1
Sample C Female 17.8
Sample D Female 19.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org