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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SECISBP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
30.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
19.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
18.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
17.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SECISBP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.5
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
19.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
16.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
343
Tumor
1.8
354
Normal
1.1
342
Normal
1.1
1041
Tumor
1.0
353
Tumor
0.9
921
Tumor
0.9
937
Tumor
0.8
487
Tumor
0.8
352
Normal
0.8
865
Tumor
0.8
358
Normal
0.8
351
Tumor
0.7
815
Tumor
0.7
1025
Tumor
0.7
313
Tumor
0.7
925
Tumor
0.7
915
Tumor
0.7
953
Tumor
0.6
755
Tumor
0.6
553
Tumor
0.6
913
Tumor
0.6
497
Tumor
0.6
911
Tumor
0.6
533
Tumor
0.6
977
Tumor
0.6
567
Tumor
0.6
861
Tumor
0.6
344
Normal
0.5
777
Tumor
0.5
785
Tumor
0.5
426
Normal
0.5
695
Tumor
0.5
635
Tumor
0.5
366
Normal
0.5
357
Tumor
0.5
746
Normal
0.5
368
Normal
0.5
513
Tumor
0.5
867
Tumor
0.5
515
Tumor
0.5
554
Normal
0.5
277
Tumor
0.5
473
Tumor
0.5
981
Tumor
0.4
431
Tumor
0.4
428
Normal
0.4
365
Tumor
0.4
384
Normal
0.4
958
Normal
0.4
465
Tumor
0.4
114
Normal
0.4
414
Normal
0.4
1013
Tumor
0.4
267
Tumor
0.4
745
Tumor
0.4
964
Normal
0.4
924
Normal
0.4
647
Tumor
0.4
341
Tumor
0.4
728
Normal
0.4
955
Tumor
0.4
983
Tumor
0.4
128
Normal
0.4
851
Tumor
0.4
546
Normal
0.4
968
Normal
0.4
375
Tumor
0.4
125
Tumor
0.3
882
Normal
0.3
451
Tumor
0.3
956
Normal
0.3
227
Tumor
0.3
463
Tumor
0.3
817
Tumor
0.3
741
Tumor
0.3
127
Tumor
0.3
111
Normal
0.3
858
Normal
0.3
1022
Normal
0.3
627
Tumor
0.3
435
Tumor
0.3
436
Normal
0.3
723
Tumor
0.3
124
Normal
0.3
976
Normal
0.3
952
Normal
0.3
1046
Normal
0.3
131
Tumor
0.3
922
Normal
0.3
537
Tumor
0.3
462
Normal
0.3
642
Normal
0.3
912
Normal
0.3
443
Tumor
0.3
285
Tumor
0.3
564
Normal
0.3
914
Normal
0.3
434
Normal
0.3
636
Normal
0.3
918
Normal
0.3
383
Tumor
0.3
558
Normal
0.3
376
Normal
0.3
951
Tumor
0.3
538
Normal
0.3
823
Tumor
0.2
722
Normal
0.2
1045
Tumor
0.2
818
Normal
0.2
926
Normal
0.2
557
Tumor
0.2
126
Normal
0.2
433
Tumor
0.2
514
Normal
0.2
738
Normal
0.2
477
Tumor
0.2
468
Normal
0.2
481
Tumor
0.2
737
Tumor
0.2
518
Normal
0.2
422
Normal
0.2
271
Tumor
0.2
698
Normal
0.2
112
Tumor
0.2
456
Normal
0.2
944
Normal
0.2
526
Normal
0.2
873
Tumor
0.2
394
Normal
0.2
857
Tumor
0.2
171
Tumor
0.2
524
Normal
0.2
1043
Tumor
0.2
714
Normal
0.2
938
Normal
0.2
484
Normal
0.2
452
Normal
0.2
1031
Tumor
0.2
568
Normal
0.2
232
Normal
0.2
388
Normal
0.2
716
Normal
0.2
534
Normal
0.2
467
Tumor
0.2
1044
Normal
0.2
923
Tumor
0.2
445
Tumor
0.2
392
Normal
0.2
448
Normal
0.2
864
Normal
0.2
878
Normal
0.2
697
Tumor
0.2
663
Tumor
0.2
135
Tumor
0.1
954
Normal
0.1
884
Normal
0.1
744
Normal
0.1
742
Normal
0.1
866
Normal
0.1
257
Tumor
0.1
618
Normal
0.1
447
Tumor
0.1
327
Tumor
0.1
525
Tumor
0.1
466
Normal
0.1
411
Tumor
0.1
446
Normal
0.1
147
Tumor
0.1
395
Tumor
0.1
1032
Normal
0.1
362
Normal
0.1
424
Normal
0.1
721
Tumor
0.1
916
Normal
0.1
284
Normal
0.1
665
Tumor
0.1
574
Normal
0.1
123
Tumor
0.1
824
Normal
0.1
862
Normal
0.1
881
Tumor
0.1
963
Tumor
0.1
743
Tumor
0.1
883
Tumor
0.1
696
Normal
0.1
573
Tumor
0.1
432
Normal
0.1
672
Normal
0.1
813
Tumor
0.1
396
Normal
0.1
1028
Normal
0.1
628
Normal
0.1
1014
Normal
0.1
1021
Tumor
0.1
464
Normal
0.1
516
Normal
0.1
1015
Tumor
0.1
231
Tumor
0.1
874
Normal
0.1
724
Normal
0.1
391
Tumor
0.1
715
Tumor
0.1
617
Tumor
0.1
387
Tumor
0.1
535
Tumor
0.1
868
Normal
0.1
1026
Normal
0.1
113
Tumor
0.1
975
Tumor
0.1
572
Normal
0.1
356
Normal
0.1
863
Tumor
0.1
648
Normal
0.1
258
Normal
0.1
386
Normal
0.1
488
Normal
0.1
852
Normal
0.0
416
Normal
0.0
286
Normal
0.0
778
Normal
0.0
615
Tumor
0.0
713
Tumor
0.0
268
Normal
0.0
493
Tumor
0.0
461
Tumor
0.0
262
Normal
0.0
186
Normal
0.0
1042
Normal
0.0
491
Tumor
0.0
423
Tumor
0.0
228
Normal
0.0
1016
Normal
0.0
641
Tumor
0.0
666
Normal
0.0
221
Tumor
0.0
966
Normal
0.0
187
Tumor
0.0
616
Normal
0.0
331
Tumor
0.0
816
Normal
0.0
272
Normal
0.0
686
Normal
0.0
141
Tumor
0.0
364
Normal
0.0
494
Normal
0.0
471
Tumor
0.0
517
Tumor
0.0
455
Tumor
0.0
984
Normal
0.0
664
Normal
0.0
328
Normal
0.0
222
Normal
0.0
472
Normal
0.0
385
Tumor
0.0
545
Tumor
0.0
523
Tumor
0.0
483
Tumor
0.0
498
Normal
-0.1
188
Normal
-0.1
1027
Tumor
-0.1
444
Normal
-0.1
223
Tumor
-0.1
528
Normal
-0.1
662
Normal
-0.1
536
Normal
-0.1
943
Tumor
-0.1
982
Normal
-0.1
492
Normal
-0.1
661
Tumor
-0.1
218
Normal
-0.1
297
Tumor
-0.1
877
Tumor
-0.1
142
Normal
-0.1
261
Tumor
-0.1
957
Tumor
-0.1
367
Tumor
-0.1
814
Normal
-0.1
161
Tumor
-0.1
474
Normal
-0.1
685
Tumor
-0.1
967
Tumor
-0.1
148
Normal
-0.1
278
Normal
-0.1
162
Normal
-0.2
146
Normal
-0.2
185
Tumor
-0.2
478
Normal
-0.2
224
Normal
-0.2
298
Normal
-0.2
412
Normal
-0.2
482
Normal
-0.2
217
Tumor
-0.2
563
Tumor
-0.2
214
Normal
-0.2
671
Tumor
-0.2
917
Tumor
-0.2
393
Tumor
-0.2
191
Tumor
-0.2
213
Tumor
-0.2
196
Normal
-0.2
138
Normal
-0.2
355
Tumor
-0.2
571
Tumor
-0.3
172
Normal
-0.3
361
Tumor
-0.3
192
Normal
-0.3
421
Tumor
-0.3
978
Normal
-0.3
132
Normal
-0.3
415
Tumor
-0.3
137
Tumor
-0.3
211
Tumor
-0.3
527
Tumor
-0.3
145
Tumor
-0.3
212
Normal
-0.3
283
Tumor
-0.4
136
Normal
-0.4
427
Tumor
-0.4
965
Tumor
-0.5
195
Tumor
-0.5
363
Tumor
-0.5
727
Tumor
-0.5
786
Normal
-0.6
413
Tumor
-0.6
312
Normal
-0.7
756
Normal
-0.8
311
Tumor
-0.9
425
Tumor
-0.9
332
Normal
-1.0
314
Normal
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
