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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
154.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
148.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
144.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
132.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
117.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
110.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
109.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
109.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
104.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
103.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
102.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
102.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
102.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
101.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
97.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
94.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
92.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
87.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
85.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
84.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
82.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
82.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
81.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
80.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
79.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
79.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
78.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
78.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
76.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
74.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
72.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
72.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
72.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
72.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
71.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
71.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
70.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
70.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
69.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
68.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
67.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
66.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
66.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
66.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
65.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
63.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
62.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
62.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
62.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
62.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
62.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
61.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
59.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
59.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
58.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
57.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
57.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
57.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
57.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
56.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
56.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
55.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
55.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
53.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
53.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
52.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
52.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
51.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
51.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
50.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
50.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
50.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
50.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
50.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
50.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
48.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
48.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
46.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
46.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
46.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
44.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
44.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
44.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
43.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
43.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
43.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
43.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
42.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
42.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
42.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
41.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
41.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
40.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
40.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
39.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
39.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
39.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
39.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
38.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
37.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
37.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
37.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
36.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
36.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
35.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
34.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
34.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
34.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
34.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
34.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
34.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
34.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
33.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
33.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
33.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
33.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
33.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
33.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
32.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
32.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
31.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
30.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
30.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
30.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
28.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
27.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
27.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
27.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
26.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
26.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
25.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
25.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
25.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
25.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
24.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
23.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
23.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
22.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
22.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
21.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
20.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
20.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
20.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
19.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
19.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
18.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
16.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCEA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.8
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
289.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
255.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
152.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
136.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
124.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
123.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
122.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
116.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
114.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
114.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
113.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
111.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
110.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
108.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
104.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
97.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
95.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
95.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
94.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
87.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
87.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
87.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
87.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
86.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
86.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
85.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
85.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
79.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
79.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
79.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
78.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
78.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
78.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
78.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
76.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
76.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
76.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
76.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
73.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
73.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
73.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
72.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
71.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
71.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
69.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
69.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
69.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
69.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
69.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
69.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
67.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
67.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
65.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
64.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
63.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
62.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
61.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
59.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
59.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
57.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
56.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
56.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
55.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
55.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
54.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
54.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
54.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
54.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
54.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
54.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
51.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
50.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
50.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
49.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
48.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
48.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
48.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
48.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
48.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
47.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
47.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
47.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
46.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
46.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
46.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
45.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
45.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
43.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
43.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
43.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
41.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
41.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
41.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
41.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
41.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
40.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
40.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
39.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
39.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
38.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
38.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
36.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
34.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
33.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
32.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
32.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
31.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
28.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
27.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
26.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
25.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
24.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
23.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
20.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
16.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.1
965
Tumor
1.0
715
Tumor
0.9
743
Tumor
0.9
463
Tumor
0.9
937
Tumor
0.8
635
Tumor
0.8
331
Tumor
0.8
473
Tumor
0.8
131
Tumor
0.8
567
Tumor
0.8
497
Tumor
0.8
877
Tumor
0.7
427
Tumor
0.7
277
Tumor
0.7
385
Tumor
0.7
411
Tumor
0.7
537
Tumor
0.7
471
Tumor
0.7
685
Tumor
0.7
641
Tumor
0.7
375
Tumor
0.7
527
Tumor
0.6
367
Tumor
0.6
977
Tumor
0.6
533
Tumor
0.6
523
Tumor
0.6
231
Tumor
0.6
211
Tumor
0.6
341
Tumor
0.6
355
Tumor
0.6
957
Tumor
0.6
923
Tumor
0.6
387
Tumor
0.6
517
Tumor
0.6
313
Tumor
0.5
185
Tumor
0.5
423
Tumor
0.5
271
Tumor
0.5
557
Tumor
0.5
975
Tumor
0.5
443
Tumor
0.5
881
Tumor
0.5
883
Tumor
0.5
465
Tumor
0.4
141
Tumor
0.4
221
Tumor
0.4
113
Tumor
0.4
421
Tumor
0.4
112
Tumor
0.4
823
Tumor
0.4
351
Tumor
0.3
865
Tumor
0.3
1045
Tumor
0.3
161
Tumor
0.3
921
Tumor
0.3
571
Tumor
0.3
951
Tumor
0.3
1013
Tumor
0.3
873
Tumor
0.3
737
Tumor
0.3
487
Tumor
0.3
353
Tumor
0.3
1031
Tumor
0.3
967
Tumor
0.3
413
Tumor
0.3
925
Tumor
0.3
297
Tumor
0.3
963
Tumor
0.2
663
Tumor
0.2
861
Tumor
0.2
814
Normal
0.2
817
Tumor
0.2
867
Tumor
0.2
433
Tumor
0.2
983
Tumor
0.2
525
Tumor
0.2
1021
Tumor
0.2
563
Tumor
0.2
425
Tumor
0.2
553
Tumor
0.2
943
Tumor
0.2
455
Tumor
0.2
755
Tumor
0.2
1025
Tumor
0.1
671
Tumor
0.1
665
Tumor
0.1
917
Tumor
0.1
515
Tumor
0.1
697
Tumor
0.1
127
Tumor
0.1
213
Tumor
0.1
955
Tumor
0.1
863
Tumor
0.1
187
Tumor
0.1
137
Tumor
0.1
461
Tumor
0.1
981
Tumor
0.1
451
Tumor
0.1
283
Tumor
0.1
813
Tumor
0.1
1015
Tumor
0.1
431
Tumor
0.1
724
Normal
0.1
361
Tumor
0.1
415
Tumor
0.1
627
Tumor
0.1
695
Tumor
0.0
363
Tumor
0.0
858
Normal
0.0
857
Tumor
0.0
513
Tumor
0.0
435
Tumor
0.0
818
Normal
0.0
477
Tumor
0.0
147
Tumor
0.0
727
Tumor
0.0
298
Normal
0.0
535
Tumor
0.0
492
Normal
0.0
915
Tumor
0.0
912
Normal
0.0
518
Normal
0.0
481
Tumor
0.0
661
Tumor
0.0
1014
Normal
0.0
884
Normal
0.0
721
Tumor
0.0
391
Tumor
0.0
528
Normal
0.0
467
Tumor
-0.1
851
Tumor
-0.1
472
Normal
-0.1
615
Tumor
-0.1
268
Normal
-0.1
534
Normal
-0.1
966
Normal
-0.1
664
Normal
-0.1
384
Normal
-0.1
984
Normal
-0.1
938
Normal
-0.1
554
Normal
-0.1
383
Tumor
-0.1
365
Tumor
-0.1
192
Normal
-0.1
482
Normal
-0.1
882
Normal
-0.1
745
Tumor
-0.1
462
Normal
-0.1
493
Tumor
-0.1
434
Normal
-0.1
516
Normal
-0.1
478
Normal
-0.1
573
Tumor
-0.1
524
Normal
-0.1
484
Normal
-0.1
538
Normal
-0.1
261
Tumor
-0.1
878
Normal
-0.1
546
Normal
-0.1
978
Normal
-0.1
953
Tumor
-0.1
436
Normal
-0.1
146
Normal
-0.1
954
Normal
-0.1
944
Normal
-0.1
142
Normal
-0.1
824
Normal
-0.1
498
Normal
-0.1
444
Normal
-0.1
125
Tumor
-0.1
756
Normal
-0.1
958
Normal
-0.1
913
Tumor
-0.1
343
Tumor
-0.1
952
Normal
-0.1
232
Normal
-0.1
815
Tumor
-0.1
368
Normal
-0.1
311
Tumor
-0.1
696
Normal
-0.2
352
Normal
-0.2
1022
Normal
-0.2
698
Normal
-0.2
393
Tumor
-0.2
778
Normal
-0.2
488
Normal
-0.2
376
Normal
-0.2
666
Normal
-0.2
982
Normal
-0.2
138
Normal
-0.2
412
Normal
-0.2
327
Tumor
-0.2
746
Normal
-0.2
714
Normal
-0.2
744
Normal
-0.2
647
Tumor
-0.2
1016
Normal
-0.2
862
Normal
-0.2
223
Tumor
-0.2
195
Tumor
-0.2
866
Normal
-0.2
191
Tumor
-0.2
456
Normal
-0.2
916
Normal
-0.2
514
Normal
-0.2
1026
Normal
-0.2
911
Tumor
-0.2
1032
Normal
-0.2
262
Normal
-0.2
474
Normal
-0.2
852
Normal
-0.2
617
Tumor
-0.2
922
Normal
-0.2
272
Normal
-0.2
864
Normal
-0.2
312
Normal
-0.2
126
Normal
-0.2
357
Tumor
-0.2
148
Normal
-0.2
662
Normal
-0.2
968
Normal
-0.2
728
Normal
-0.2
366
Normal
-0.2
257
Tumor
-0.2
786
Normal
-0.2
464
Normal
-0.2
132
Normal
-0.2
1046
Normal
-0.2
716
Normal
-0.2
186
Normal
-0.2
918
Normal
-0.2
785
Tumor
-0.2
396
Normal
-0.2
1044
Normal
-0.2
874
Normal
-0.2
446
Normal
-0.2
816
Normal
-0.2
386
Normal
-0.2
526
Normal
-0.2
362
Normal
-0.2
574
Normal
-0.2
1041
Tumor
-0.2
1043
Tumor
-0.2
924
Normal
-0.2
738
Normal
-0.2
278
Normal
-0.2
314
Normal
-0.2
491
Tumor
-0.2
536
Normal
-0.2
618
Normal
-0.2
672
Normal
-0.2
332
Normal
-0.2
926
Normal
-0.2
1042
Normal
-0.2
777
Tumor
-0.2
218
Normal
-0.2
344
Normal
-0.2
111
Normal
-0.3
188
Normal
-0.3
136
Normal
-0.3
636
Normal
-0.3
364
Normal
-0.3
286
Normal
-0.3
468
Normal
-0.3
124
Normal
-0.3
628
Normal
-0.3
426
Normal
-0.3
342
Normal
-0.3
448
Normal
-0.3
964
Normal
-0.3
1028
Normal
-0.3
162
Normal
-0.3
114
Normal
-0.3
686
Normal
-0.3
722
Normal
-0.3
648
Normal
-0.3
424
Normal
-0.3
196
Normal
-0.3
572
Normal
-0.3
466
Normal
-0.3
558
Normal
-0.3
868
Normal
-0.3
145
Tumor
-0.3
545
Tumor
-0.3
564
Normal
-0.3
328
Normal
-0.3
228
Normal
-0.3
956
Normal
-0.3
123
Tumor
-0.3
742
Normal
-0.3
354
Normal
-0.3
392
Normal
-0.3
422
Normal
-0.3
432
Normal
-0.3
416
Normal
-0.3
428
Normal
-0.3
642
Normal
-0.3
976
Normal
-0.3
914
Normal
-0.3
128
Normal
-0.3
217
Tumor
-0.3
258
Normal
-0.3
1027
Tumor
-0.3
452
Normal
-0.3
222
Normal
-0.4
741
Tumor
-0.4
224
Normal
-0.4
395
Tumor
-0.4
483
Tumor
-0.4
568
Normal
-0.4
212
Normal
-0.4
172
Normal
-0.4
447
Tumor
-0.4
494
Normal
-0.4
284
Normal
-0.4
388
Normal
-0.4
356
Normal
-0.4
358
Normal
-0.4
214
Normal
-0.4
723
Tumor
-0.4
394
Normal
-0.4
414
Normal
-0.5
616
Normal
-0.5
227
Tumor
-0.5
267
Tumor
-0.5
135
Tumor
-0.5
713
Tumor
-0.6
171
Tumor
-0.8
445
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
