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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRPV2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
146.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
91.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
79.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
69.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRPV2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.4
Number of samples
231
Samples
Sample
Description
TPM
DO45297
0 years, female, NA, stage:4, dead, 1260 days
76.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
67.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
61.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
46.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
27.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
6.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
3.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
1.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
1.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
1.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
2.0
815
Tumor
1.3
537
Tumor
1.2
497
Tumor
1.1
363
Tumor
1.1
211
Tumor
1.0
715
Tumor
1.0
135
Tumor
1.0
187
Tumor
0.9
661
Tumor
0.9
917
Tumor
0.8
311
Tumor
0.8
227
Tumor
0.8
724
Normal
0.8
192
Normal
0.7
434
Normal
0.7
536
Normal
0.7
535
Tumor
0.7
361
Tumor
0.7
455
Tumor
0.7
444
Normal
0.7
188
Normal
0.7
492
Normal
0.7
978
Normal
0.6
213
Tumor
0.6
478
Normal
0.6
141
Tumor
0.6
943
Tumor
0.5
385
Tumor
0.5
343
Tumor
0.5
1015
Tumor
0.5
185
Tumor
0.5
524
Normal
0.5
538
Normal
0.5
137
Tumor
0.5
672
Normal
0.4
344
Normal
0.4
713
Tumor
0.4
421
Tumor
0.4
697
Tumor
0.4
916
Normal
0.4
983
Tumor
0.4
195
Tumor
0.4
191
Tumor
0.4
467
Tumor
0.4
145
Tumor
0.4
1031
Tumor
0.4
498
Normal
0.4
367
Tumor
0.4
146
Normal
0.4
1028
Normal
0.4
861
Tumor
0.4
823
Tumor
0.3
491
Tumor
0.3
976
Normal
0.3
966
Normal
0.3
563
Tumor
0.3
262
Normal
0.3
514
Normal
0.3
355
Tumor
0.3
391
Tumor
0.3
365
Tumor
0.3
574
Normal
0.3
814
Normal
0.3
1044
Normal
0.3
447
Tumor
0.3
415
Tumor
0.3
142
Normal
0.2
386
Normal
0.2
671
Tumor
0.2
297
Tumor
0.2
516
Normal
0.2
938
Normal
0.2
954
Normal
0.2
956
Normal
0.2
383
Tumor
0.2
375
Tumor
0.2
124
Normal
0.2
364
Normal
0.2
474
Normal
0.2
1042
Normal
0.2
396
Normal
0.2
283
Tumor
0.2
958
Normal
0.2
212
Normal
0.2
852
Normal
0.2
573
Tumor
0.2
913
Tumor
0.2
126
Normal
0.2
362
Normal
0.2
952
Normal
0.2
778
Normal
0.2
526
Normal
0.2
224
Normal
0.2
721
Tumor
0.2
172
Normal
0.2
384
Normal
0.2
686
Normal
0.1
413
Tumor
0.1
975
Tumor
0.1
424
Normal
0.1
125
Tumor
0.1
914
Normal
0.1
1032
Normal
0.1
394
Normal
0.1
138
Normal
0.1
868
Normal
0.1
148
Normal
0.1
468
Normal
0.1
558
Normal
0.1
392
Normal
0.1
786
Normal
0.1
312
Normal
0.1
817
Tumor
0.1
428
Normal
0.1
368
Normal
0.1
127
Tumor
0.1
963
Tumor
0.1
716
Normal
0.1
272
Normal
0.1
744
Normal
0.1
446
Normal
0.1
628
Normal
0.1
332
Normal
0.1
461
Tumor
0.1
162
Normal
0.1
161
Tumor
0.1
427
Tumor
0.1
564
Normal
0.1
816
Normal
0.1
881
Tumor
0.1
944
Normal
0.1
395
Tumor
0.1
214
Normal
0.1
662
Normal
0.1
488
Normal
0.1
666
Normal
0.0
414
Normal
0.0
525
Tumor
0.0
432
Normal
0.0
528
Normal
0.0
366
Normal
0.0
217
Tumor
0.0
493
Tumor
0.0
328
Normal
0.0
728
Normal
0.0
472
Normal
0.0
136
Normal
0.0
186
Normal
0.0
471
Tumor
0.0
862
Normal
0.0
426
Normal
0.0
268
Normal
0.0
955
Tumor
0.0
494
Normal
N/A
664
Normal
0.0
327
Tumor
0.0
874
Normal
0.0
545
Tumor
0.0
572
Normal
0.0
636
Normal
0.0
111
Normal
0.0
388
Normal
0.0
376
Normal
0.0
918
Normal
0.0
354
Normal
0.0
857
Tumor
0.0
352
Normal
0.0
984
Normal
0.0
1022
Normal
0.0
412
Normal
0.0
554
Normal
0.0
314
Normal
0.0
617
Tumor
0.0
878
Normal
0.0
258
Normal
0.0
982
Normal
0.0
456
Normal
0.0
883
Tumor
0.0
228
Normal
0.0
464
Normal
-0.1
1046
Normal
-0.1
222
Normal
-0.1
196
Normal
-0.1
284
Normal
-0.1
422
Normal
-0.1
416
Normal
-0.1
1016
Normal
-0.1
981
Tumor
-0.1
448
Normal
-0.1
463
Tumor
-0.1
546
Normal
-0.1
696
Normal
-0.1
114
Normal
-0.1
568
Normal
-0.1
387
Tumor
-0.1
722
Normal
-0.1
813
Tumor
-0.1
968
Normal
-0.1
1045
Tumor
-0.1
864
Normal
-0.1
466
Normal
-0.1
481
Tumor
-0.1
342
Normal
-0.1
937
Tumor
-0.1
433
Tumor
-0.1
924
Normal
-0.1
922
Normal
-0.1
462
Normal
-0.1
482
Normal
-0.1
642
Normal
-0.1
618
Normal
-0.1
858
Normal
-0.1
278
Normal
-0.1
261
Tumor
-0.1
232
Normal
-0.2
925
Tumor
-0.2
867
Tumor
-0.2
331
Tumor
-0.2
616
Normal
-0.2
223
Tumor
-0.2
534
Normal
-0.2
884
Normal
-0.2
926
Normal
-0.2
866
Normal
-0.2
877
Tumor
-0.2
356
Normal
-0.2
641
Tumor
-0.2
477
Tumor
-0.2
298
Normal
-0.2
1043
Tumor
-0.2
665
Tumor
-0.2
218
Normal
-0.2
742
Normal
-0.2
132
Normal
-0.2
286
Normal
-0.2
977
Tumor
-0.2
863
Tumor
-0.2
818
Normal
-0.2
353
Tumor
-0.2
698
Normal
-0.2
923
Tumor
-0.2
423
Tumor
-0.2
738
Normal
-0.2
723
Tumor
-0.2
518
Normal
-0.2
1026
Normal
-0.2
1014
Normal
-0.3
615
Tumor
-0.3
277
Tumor
-0.3
964
Normal
-0.3
824
Normal
-0.3
756
Normal
-0.3
714
Normal
-0.3
451
Tumor
-0.3
648
Normal
-0.3
113
Tumor
-0.3
483
Tumor
-0.3
912
Normal
-0.3
358
Normal
-0.3
128
Normal
-0.3
513
Tumor
-0.3
663
Tumor
-0.4
921
Tumor
-0.4
484
Normal
-0.4
443
Tumor
-0.4
882
Normal
-0.4
231
Tumor
-0.4
785
Tumor
-0.4
557
Tumor
-0.4
915
Tumor
-0.4
436
Normal
-0.4
341
Tumor
-0.4
515
Tumor
-0.4
755
Tumor
-0.4
647
Tumor
-0.4
1027
Tumor
-0.4
221
Tumor
-0.4
571
Tumor
-0.4
351
Tumor
-0.5
953
Tumor
-0.5
1041
Tumor
-0.5
112
Tumor
-0.5
627
Tumor
-0.5
951
Tumor
-0.5
473
Tumor
-0.5
746
Normal
-0.5
553
Tumor
-0.5
727
Tumor
-0.5
147
Tumor
-0.5
487
Tumor
-0.6
313
Tumor
-0.6
171
Tumor
-0.6
967
Tumor
-0.6
685
Tumor
-0.6
452
Normal
-0.6
411
Tumor
-0.6
567
Tumor
-0.6
527
Tumor
-0.6
523
Tumor
-0.6
271
Tumor
-0.7
517
Tumor
-0.7
1025
Tumor
-0.7
965
Tumor
-0.7
267
Tumor
-0.7
865
Tumor
-0.7
1013
Tumor
-0.7
957
Tumor
-0.7
431
Tumor
-0.7
873
Tumor
-0.7
285
Tumor
-0.7
257
Tumor
-0.7
435
Tumor
-0.7
393
Tumor
-0.7
131
Tumor
-0.7
425
Tumor
-0.7
695
Tumor
-0.8
777
Tumor
-0.8
445
Tumor
-0.8
533
Tumor
-0.8
737
Tumor
-0.8
123
Tumor
-0.8
745
Tumor
-0.9
1021
Tumor
-0.9
741
Tumor
-0.9
743
Tumor
-0.9
465
Tumor
-0.9
357
Tumor
-1.0
911
Tumor
-1.1
635
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
