MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.7 nTPM
HPA Brain:55.3 nTPM
GTEx:42.7 nTPM
FANTOM5:83.8 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:43.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.1
2411 Female, age 72, unknown 44.2
1870 Female, age 42, unknown 44.0
1827 Male, age 72, unknown 39.2
2219 Male, age 76, both hemispheres 37.3
1833 Male, age 53, unknown 32.2
2828 Female, age 72, unknown 31.3
1830 Male, age 51, unknown 29.7
2019 Male, age 18, unknown 24.2
2666 Male, age 74, left hemisphere 23.3
2586 Male, age 75, left hemisphere 16.1
Dorsal raphe nucleus
nTPM: 40.7
2298 Female, age 72, unknown 58.4
2750 Male, age 76, both hemispheres 42.5
2047 Male, age 72, unknown 37.0
2016 Female, age 72, unknown 33.1
1828 Male, age 53, unknown 32.8
Inferior colliculus
nTPM: 35.5
2097 Female, age 72, unknown 42.7
1848 Female, age 42, unknown 35.9
2849 Male, age 72, unknown 35.1
1890 Male, age 53, unknown 28.4
Median raphe nucleus
nTPM: 55.3
2220 Male, age 76, midline 55.3
Periaquaductal grey, anterior
nTPM: 39.6
1947 Male, age 18, unknown 45.6
1795 Male, age 51, unknown 39.6
2502 Female, age 75, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 37.7
2850 Male, age 76, both hemispheres 42.7
1840 Male, age 53, unknown 41.5
2464 Female, age 72, unknown 34.2
1831 Male, age 72, unknown 32.3
Periaquaductal grey, lateral
nTPM: 40.3
2272 Male, age 74, both hemispheres 44.5
2053 Male, age 18, unknown 39.5
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 38.5
2224 Female, age 72, unknown 57.2
2667 Female, age 75, unknown 45.1
2273 Male, age 74, both hemispheres 44.4
2825 Male, age 18, unknown 39.3
2316 Male, age 76, right hemisphere 37.9
1816 Male, age 51, unknown 36.6
1815 Male, age 53, unknown 36.2
2007 Male, age 72, unknown 34.0
1944 Female, age 72, unknown 33.9
1817 Female, age 42, unknown 32.4
2407 Male, age 75, both hemispheres 26.9
Red nucleus
nTPM: 27.9
1821 Female, age 72, unknown 33.5
2725 Female, age 75, unknown 33.1
1954 Female, age 42, unknown 32.2
2503 Female, age 72, unknown 30.5
1904 Male, age 53, unknown 29.9
2227 Male, age 72, unknown 28.5
2769 Male, age 72, unknown 28.0
1865 Male, age 51, unknown 26.6
2823 Male, age 76, right hemisphere 25.6
2785 Male, age 18, unknown 25.5
2584 Male, age 75, left hemisphere 21.2
2588 Male, age 74, left hemisphere 20.2
Substantia nigra
nTPM: 32.4
2241 Male, age 72, unknown 39.5
1916 Female, age 42, unknown 38.8
1889 Female, age 72, unknown 37.8
1851 Male, age 51, unknown 34.7
1941 Male, age 53, unknown 34.1
2409 Female, age 72, unknown 33.6
2699 Male, age 18, unknown 31.0
2590 Female, age 75, unknown 26.5
2583 Male, age 75, right hemisphere 24.0
2665 Male, age 74, both hemispheres 24.0
Superior colliculus
nTPM: 33.4
1796 Male, age 53, unknown 40.3
1895 Male, age 76, right hemisphere 40.1
2261 Male, age 18, unknown 39.1
2587 Male, age 74, left hemisphere 35.3
1839 Male, age 51, unknown 35.2
2668 Female, age 75, unknown 32.4
1913 Female, age 42, unknown 32.2
2087 Female, age 72, unknown 31.5
1995 Male, age 72, unknown 27.6
2664 Male, age 75, both hemispheres 20.0
Ventral tegmental area
nTPM: 38.2
2218 Male, age 76, both hemispheres 44.3
2410 Female, age 72, unknown 40.0
1915 Female, age 42, unknown 39.6
2021 Male, age 53, unknown 36.4
1942 Male, age 51, unknown 36.0
2223 Female, age 72, unknown 32.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.7
Samples: 139

Max nTPM: 83.3
Min nTPM: 22.2
Std nTPM: 12.6
Median nTPM: 41.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 83.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 74.7
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 71.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 69.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 68.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 66.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 63.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 62.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 62.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 61.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 83.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.8
FF:10158-103A5 76 years, female 83.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.4
Samples: 4

Max nTPM: 27.1
Min nTPM: 10.9
Sample A Female 27.1
Sample B Female 17.5
Sample C Male 22.0
Sample D Male 10.9
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 29.5
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 21.4
Sample C Male 17.3
Sample D Male 29.5
Periaqueductal gray
nTPM: 19.2
Samples: 3

Max nTPM: 20.4
Min nTPM: 18.4
Sample B Female 18.9
Sample C Male 20.4
Sample D Male 18.4
Superior colliculi
nTPM: 22.5
Samples: 4

Max nTPM: 29.7
Min nTPM: 17.8
Sample A Female 29.7
Sample B Female 17.8
Sample C Male 18.9
Sample D Male 23.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 43.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.0
Samples: 4

Max nTPM: 45.4
Min nTPM: 41.3
Sample A Male 45.4
Sample B Male 41.3
Sample C Female 41.3
Sample D Female 44.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
17 Antisense, RP_Baylor_253934, Mouse strain C57BL/6J (56 days, male) 0.1
18 Antisense, RP_Baylor_253934, Mouse strain C57BL/6J (56 days, male) 0.0

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