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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP7 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.7
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
30.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
29.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
28.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
28.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
27.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
26.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
25.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
23.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
22.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
19.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
19.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
17.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
16.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
16.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
15.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
341
Tumor
0.9
351
Tumor
0.8
1013
Tumor
0.8
647
Tumor
0.8
231
Tumor
0.8
487
Tumor
0.7
695
Tumor
0.7
977
Tumor
0.7
965
Tumor
0.7
127
Tumor
0.7
635
Tumor
0.7
497
Tumor
0.7
411
Tumor
0.6
715
Tumor
0.6
473
Tumor
0.6
465
Tumor
0.6
357
Tumor
0.5
777
Tumor
0.5
523
Tumor
0.5
813
Tumor
0.5
435
Tumor
0.5
533
Tumor
0.5
937
Tumor
0.5
211
Tumor
0.5
665
Tumor
0.5
161
Tumor
0.4
513
Tumor
0.4
967
Tumor
0.4
724
Normal
0.4
185
Tumor
0.4
785
Tumor
0.4
925
Tumor
0.4
477
Tumor
0.4
413
Tumor
0.4
755
Tumor
0.3
445
Tumor
0.3
355
Tumor
0.3
957
Tumor
0.3
427
Tumor
0.3
1015
Tumor
0.3
557
Tumor
0.3
433
Tumor
0.3
431
Tumor
0.3
741
Tumor
0.3
123
Tumor
0.3
171
Tumor
0.3
367
Tumor
0.3
873
Tumor
0.2
1041
Tumor
0.2
461
Tumor
0.2
571
Tumor
0.2
953
Tumor
0.2
527
Tumor
0.2
1031
Tumor
0.2
663
Tumor
0.2
685
Tumor
0.2
131
Tumor
0.2
814
Normal
0.2
917
Tumor
0.2
313
Tumor
0.2
361
Tumor
0.2
395
Tumor
0.2
112
Tumor
0.2
515
Tumor
0.2
423
Tumor
0.2
331
Tumor
0.2
867
Tumor
0.2
913
Tumor
0.2
881
Tumor
0.2
451
Tumor
0.2
877
Tumor
0.2
141
Tumor
0.2
271
Tumor
0.1
943
Tumor
0.1
975
Tumor
0.1
861
Tumor
0.1
697
Tumor
0.1
391
Tumor
0.1
447
Tumor
0.1
573
Tumor
0.1
493
Tumor
0.1
915
Tumor
0.1
1045
Tumor
0.1
455
Tumor
0.1
267
Tumor
0.1
923
Tumor
0.1
911
Tumor
0.1
285
Tumor
0.1
713
Tumor
0.1
365
Tumor
0.1
195
Tumor
0.1
261
Tumor
0.1
483
Tumor
0.1
1021
Tumor
0.1
627
Tumor
0.1
297
Tumor
0.1
491
Tumor
0.1
615
Tumor
0.1
963
Tumor
0.1
481
Tumor
0.1
467
Tumor
0.0
721
Tumor
0.0
471
Tumor
0.0
383
Tumor
0.0
353
Tumor
0.0
661
Tumor
0.0
981
Tumor
0.0
517
Tumor
0.0
187
Tumor
0.0
277
Tumor
0.0
743
Tumor
0.0
671
Tumor
0.0
492
Normal
0.0
921
Tumor
0.0
817
Tumor
0.0
217
Tumor
0.0
444
Normal
0.0
415
Tumor
0.0
327
Tumor
0.0
192
Normal
0.0
443
Tumor
0.0
563
Tumor
0.0
227
Tumor
0.0
268
Normal
0.0
463
Tumor
0.0
498
Normal
-0.1
524
Normal
-0.1
425
Tumor
-0.1
343
Tumor
-0.1
553
Tumor
-0.1
865
Tumor
-0.1
955
Tumor
-0.1
954
Normal
-0.1
538
Normal
-0.1
778
Normal
-0.1
311
Tumor
-0.1
434
Normal
-0.1
1014
Normal
-0.1
966
Normal
-0.1
113
Tumor
-0.1
328
Normal
-0.1
938
Normal
-0.1
554
Normal
-0.1
191
Tumor
-0.1
518
Normal
-0.1
432
Normal
-0.1
545
Tumor
-0.1
352
Normal
-0.1
815
Tumor
-0.1
478
Normal
-0.1
344
Normal
-0.1
883
Tumor
-0.1
484
Normal
-0.1
488
Normal
-0.1
412
Normal
-0.1
385
Tumor
-0.1
534
Normal
-0.1
858
Normal
-0.1
535
Tumor
-0.1
314
Normal
-0.1
857
Tumor
-0.1
536
Normal
-0.1
393
Tumor
-0.1
516
Normal
-0.1
916
Normal
-0.1
446
Normal
-0.1
472
Normal
-0.1
212
Normal
-0.1
223
Tumor
-0.1
878
Normal
-0.1
464
Normal
-0.1
978
Normal
-0.1
356
Normal
-0.1
188
Normal
-0.1
272
Normal
-0.1
1028
Normal
-0.1
641
Tumor
-0.1
984
Normal
-0.1
387
Tumor
-0.1
951
Tumor
-0.1
756
Normal
-0.1
546
Normal
-0.1
964
Normal
-0.1
924
Normal
-0.1
146
Normal
-0.1
958
Normal
-0.1
686
Normal
-0.1
746
Normal
-0.1
142
Normal
-0.1
262
Normal
-0.1
944
Normal
-0.2
863
Tumor
-0.2
126
Normal
-0.2
221
Tumor
-0.2
1016
Normal
-0.2
636
Normal
-0.2
284
Normal
-0.2
124
Normal
-0.2
354
Normal
-0.2
884
Normal
-0.2
428
Normal
-0.2
525
Tumor
-0.2
628
Normal
-0.2
926
Normal
-0.2
983
Tumor
-0.2
364
Normal
-0.2
278
Normal
-0.2
514
Normal
-0.2
474
Normal
-0.2
918
Normal
-0.2
416
Normal
-0.2
744
Normal
-0.2
868
Normal
-0.2
618
Normal
-0.2
224
Normal
-0.2
696
Normal
-0.2
436
Normal
-0.2
482
Normal
-0.2
145
Tumor
-0.2
111
Normal
-0.2
912
Normal
-0.2
664
Normal
-0.2
462
Normal
-0.2
528
Normal
-0.2
332
Normal
-0.2
982
Normal
-0.2
882
Normal
-0.2
128
Normal
-0.2
1032
Normal
-0.2
874
Normal
-0.2
786
Normal
-0.2
138
Normal
-0.2
342
Normal
-0.2
298
Normal
-0.2
922
Normal
-0.2
818
Normal
-0.2
148
Normal
-0.2
228
Normal
-0.2
312
Normal
-0.2
716
Normal
-0.2
258
Normal
-0.2
738
Normal
-0.2
363
Tumor
-0.2
968
Normal
-0.2
114
Normal
-0.2
526
Normal
-0.2
666
Normal
-0.2
824
Normal
-0.2
286
Normal
-0.2
952
Normal
-0.2
456
Normal
-0.2
358
Normal
-0.2
866
Normal
-0.2
186
Normal
-0.2
862
Normal
-0.2
162
Normal
-0.2
617
Tumor
-0.2
642
Normal
-0.2
218
Normal
-0.2
466
Normal
-0.2
196
Normal
-0.2
1042
Normal
-0.2
714
Normal
-0.2
1026
Normal
-0.2
494
Normal
-0.2
362
Normal
-0.2
976
Normal
-0.2
558
Normal
-0.2
426
Normal
-0.2
384
Normal
-0.2
132
Normal
-0.2
448
Normal
-0.2
283
Tumor
-0.2
742
Normal
-0.2
213
Tumor
-0.2
232
Normal
-0.2
137
Tumor
-0.2
376
Normal
-0.2
537
Tumor
-0.2
386
Normal
-0.2
574
Normal
-0.2
366
Normal
-0.2
424
Normal
-0.2
648
Normal
-0.2
672
Normal
-0.2
956
Normal
-0.3
728
Normal
-0.3
222
Normal
-0.3
1022
Normal
-0.3
662
Normal
-0.3
864
Normal
-0.3
421
Tumor
-0.3
852
Normal
-0.3
422
Normal
-0.3
147
Tumor
-0.3
136
Normal
-0.3
172
Normal
-0.3
723
Tumor
-0.3
572
Normal
-0.3
414
Normal
-0.3
368
Normal
-0.3
914
Normal
-0.3
135
Tumor
-0.3
616
Normal
-0.3
1046
Normal
-0.3
392
Normal
-0.3
722
Normal
-0.3
468
Normal
-0.3
698
Normal
-0.3
568
Normal
-0.3
1044
Normal
-0.3
394
Normal
-0.3
396
Normal
-0.3
564
Normal
-0.3
567
Tumor
-0.3
737
Tumor
-0.3
816
Normal
-0.3
375
Tumor
-0.3
214
Normal
-0.3
257
Tumor
-0.3
1025
Tumor
-0.3
452
Normal
-0.3
388
Normal
-0.3
1043
Tumor
-0.4
125
Tumor
-0.4
823
Tumor
-0.4
1027
Tumor
-0.5
851
Tumor
-0.5
727
Tumor
-0.6
745
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
