MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.4 nTPM
HPA Brain:20.5 nTPM
GTEx:4.4 nTPM
FANTOM5:35.4 Scaled Tags Per Million
Pig:11.9 nTPM
Mouse:7.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 20.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 18.1
2219 Male, age 76, both hemispheres 20.8
1870 Female, age 42, unknown 19.7
2411 Female, age 72, unknown 19.0
1830 Male, age 51, unknown 18.5
2666 Male, age 74, left hemisphere 18.5
1833 Male, age 53, unknown 18.4
1827 Male, age 72, unknown 17.3
2828 Female, age 72, unknown 17.0
2019 Male, age 18, unknown 16.2
2586 Male, age 75, left hemisphere 15.3
Dorsal raphe nucleus
nTPM: 17.7
2016 Female, age 72, unknown 18.8
2298 Female, age 72, unknown 17.7
1828 Male, age 53, unknown 17.6
2750 Male, age 76, both hemispheres 17.3
2047 Male, age 72, unknown 17.2
Inferior colliculus
nTPM: 20.5
2849 Male, age 72, unknown 22.0
1848 Female, age 42, unknown 20.6
1890 Male, age 53, unknown 19.7
2097 Female, age 72, unknown 19.6
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 17.5
1947 Male, age 18, unknown 18.6
2502 Female, age 75, unknown 18.2
1795 Male, age 51, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 19.8
1831 Male, age 72, unknown 20.3
2850 Male, age 76, both hemispheres 20.2
1840 Male, age 53, unknown 19.8
2464 Female, age 72, unknown 18.7
Periaquaductal grey, lateral
nTPM: 17.7
2053 Male, age 18, unknown 18.0
2140 Male, age 76, both hemispheres 17.9
2272 Male, age 74, both hemispheres 17.2
Pretectal area
nTPM: 18.8
1817 Female, age 42, unknown 20.0
1816 Male, age 51, unknown 19.8
2224 Female, age 72, unknown 19.8
1815 Male, age 53, unknown 19.7
2825 Male, age 18, unknown 19.0
1944 Female, age 72, unknown 18.9
2273 Male, age 74, both hemispheres 18.7
2667 Female, age 75, unknown 18.3
2007 Male, age 72, unknown 17.8
2407 Male, age 75, both hemispheres 17.6
2316 Male, age 76, right hemisphere 17.5
Red nucleus
nTPM: 18.1
2725 Female, age 75, unknown 20.2
2503 Female, age 72, unknown 19.5
1904 Male, age 53, unknown 18.7
1954 Female, age 42, unknown 18.7
1865 Male, age 51, unknown 18.6
1821 Female, age 72, unknown 18.3
2785 Male, age 18, unknown 18.1
2584 Male, age 75, left hemisphere 17.9
2227 Male, age 72, unknown 17.8
2823 Male, age 76, right hemisphere 17.8
2588 Male, age 74, left hemisphere 16.1
2769 Male, age 72, unknown 15.4
Substantia nigra
nTPM: 17.0
2241 Male, age 72, unknown 20.4
1889 Female, age 72, unknown 18.7
1941 Male, age 53, unknown 17.9
2665 Male, age 74, both hemispheres 17.0
1916 Female, age 42, unknown 16.4
2699 Male, age 18, unknown 16.4
1851 Male, age 51, unknown 16.1
2583 Male, age 75, right hemisphere 15.8
2590 Female, age 75, unknown 15.5
2409 Female, age 72, unknown 15.3
Superior colliculus
nTPM: 18.1
1913 Female, age 42, unknown 21.0
1895 Male, age 76, right hemisphere 20.0
2261 Male, age 18, unknown 18.8
2587 Male, age 74, left hemisphere 18.8
2087 Female, age 72, unknown 18.7
1839 Male, age 51, unknown 18.1
1995 Male, age 72, unknown 18.1
2668 Female, age 75, unknown 17.3
1796 Male, age 53, unknown 16.4
2664 Male, age 75, both hemispheres 13.8
Ventral tegmental area
nTPM: 16.7
2223 Female, age 72, unknown 17.5
1942 Male, age 51, unknown 17.3
2218 Male, age 76, both hemispheres 17.0
2410 Female, age 72, unknown 16.9
2021 Male, age 53, unknown 16.2
1915 Female, age 42, unknown 15.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.4
Samples: 139

Max nTPM: 7.5
Min nTPM: 2.6
Std nTPM: 0.9
Median nTPM: 4.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 7.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 7.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 6.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 6.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 6.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 6.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 6.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 6.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 6.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 5.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.4
FF:10158-103A5 76 years, female 35.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 11.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 12.8
Min nTPM: 10.4
Sample A Female 11.8
Sample B Female 12.6
Sample C Male 12.8
Sample D Male 10.4
Midbrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.9
Sample A Female 11.2
Sample B Female 12.3
Sample C Male 10.9
Sample D Male 11.0
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 11.3
Min nTPM: 11.1
Sample B Female 11.1
Sample C Male 11.3
Sample D Male 11.3
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 10.3
Sample C Male 11.7
Sample D Male 10.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.7
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.8
Sample A Male 6.8
Sample B Male 8.2
Sample C Female 8.2
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71147815 Antisense, RP_050719_02_D07, Mouse strain C57BL/6J (56 days, male) 0.1

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