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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
103.1
Sample id
Sample description
nTPM
Amygdala nTPM: 46.2
2517
Female, age 94, left hemisphere
87.1
2514
Male, age 75, right hemisphere
63.9
1987
Female, age 91, left hemisphere
58.6
2814
Male, age 76, right hemisphere
15.0
2695
Female, age 67, right hemisphere
6.6
Basal amygdala nTPM: 83.8
2243
Female, age 91, right hemisphere
130.4
2685
Female, age 94, left hemisphere
100.0
2609
Male, age 75, right hemisphere
82.2
2110
Male, age 80, left hemisphere
72.7
2827
Female, age 67, right hemisphere
63.2
1955
Male, age 76, both hemispheres
54.1
Central amygdala nTPM: 58.3
2826
Female, age 94, left hemisphere
133.4
2239
Male, age 80, left hemisphere
78.1
2515
Male, age 75, right hemisphere
40.2
2701
Female, age 91, right hemisphere
29.2
1905
Male, age 76, both hemispheres
10.5
Corticomedial amygdala nTPM: 103.1
2829
Male, age 80, left hemisphere
181.2
2428
Male, age 75, right hemisphere
107.5
2429
Female, age 94, left hemisphere
100.8
2242
Female, age 91, right hemisphere
96.8
2535
Female, age 67, right hemisphere
76.9
2240
Male, age 76, both hemispheres
55.4
Lateral amygdala nTPM: 71.4
2534
Female, age 94, left hemisphere
175.0
2256
Male, age 80, left hemisphere
74.9
2516
Male, age 75, right hemisphere
52.7
1883
Male, age 76, both hemispheres
49.9
2255
Female, age 91, right hemisphere
38.9
2830
Female, age 67, right hemisphere
37.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
241.6
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 241.6
Samples: 181
Max nTPM: 924.6
Min nTPM: 19.7
Std nTPM: 152.6
Median nTPM: 205.9
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
924.6
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
826.5
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
683.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
668.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
602.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
586.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
562.0
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
521.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
492.8
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
489.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
487.2
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
482.6
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
479.0
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
456.0
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
453.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
449.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
448.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
445.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
439.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
430.5
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
419.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
417.0
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
402.5
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
396.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
396.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
390.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
389.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
388.5
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
385.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
381.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
380.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
379.2
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
379.0
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
373.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
373.4
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
372.7
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
368.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
367.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
362.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
353.1
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
342.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
341.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
341.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
340.2
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
336.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
333.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
332.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
331.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
325.6
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
325.1
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
320.5
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
311.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
306.1
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
303.7
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
300.1
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
297.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
296.6
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
296.6
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
294.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
290.4
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
284.5
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
276.8
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
273.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
273.4
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
273.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
264.9
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
264.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
262.6
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
261.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
259.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
258.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
256.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
256.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
253.0
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
251.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
245.6
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
244.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
243.3
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
241.5
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
241.0
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
238.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
228.7
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
223.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
223.5
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
222.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
220.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
215.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
215.0
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
213.6
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
207.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
205.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
205.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
205.3
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
203.2
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
202.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
190.8
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
190.0
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
189.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
189.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
189.8
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
186.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
185.3
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
184.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
183.5
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
182.6
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
180.3
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
178.7
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
176.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
174.4
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
172.7
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
169.8
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
169.5
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
168.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
166.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
166.2
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
163.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
163.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
163.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
157.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
156.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
155.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
155.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
147.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
142.9
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
142.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
138.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
137.9
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
137.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
134.1
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
133.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
132.3
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
128.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
127.9
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
126.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
126.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
126.4
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
124.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
123.8
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
122.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
122.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
121.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
120.7
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
120.0
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
118.6
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
113.4
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
111.9
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
109.7
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
109.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
105.8
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
101.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
100.9
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
99.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
96.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
94.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
90.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
90.0
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
87.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
85.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
84.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
82.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
80.0
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
79.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
78.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
74.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
73.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
68.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
66.0
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
65.8
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
65.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
62.4
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
62.4
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
60.0
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
55.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
55.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
52.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
50.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
39.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
33.3
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
33.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
32.0
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
19.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.1
Pig sample
Sample description
nTPM
Amygdala nTPM: 26.1
Samples: 4
Max nTPM: 32.5
Min nTPM: 20.4
Sample A
Female
32.5
Sample B
Female
24.0
Sample C
Male
20.4
Sample D
Male
27.4
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
418.0
Mouse sample
Sample description
nTPM
Amygdala nTPM: 418.0
Samples: 4
Max nTPM: 461.4
Min nTPM: 352.1
Sample A
Male
403.3
Sample B
Male
455.1
Sample C
Female
461.4
Sample D
Female
352.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
