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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
149.3
nTPM
HPA Brain:
155.3
nTPM
GTEx:
149.3
nTPM
FANTOM5:
210.3
Scaled Tags Per Million
Pig:
68.1
nTPM
Mouse:
497.2
nTPM
Allen mouse:
14.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 101.9
1898
Male, age 80, left hemisphere
212.6
1855
Male, age 76, left hemisphere
101.8
2529
Female, age 94, left hemisphere
77.5
2148
Female, age 91, left hemisphere
76.7
1911
Female, age 85, right hemisphere
74.6
2621
Female, age 67, right hemisphere
68.1
Dentate gyrus nTPM: 96.6
2528
Male, age 74, both hemispheres
158.2
1927
Female, age 91, both hemispheres
131.9
2246
Female, age 85, both hemispheres
104.5
2010
Male, age 76, both hemispheres
72.9
2530
Female, age 94, left hemisphere
66.9
2531
Female, age 67, both hemispheres
44.8
Entorhinal gyrus nTPM: 68.9
2764
Male, age 80, right hemisphere
97.4
1787
Male, age 76, left hemisphere
82.8
2686
Male, age 75, right hemisphere
70.5
1938
Female, age 85, left hemisphere
64.0
2117
Female, age 91, right hemisphere
63.7
2613
Female, age 94, left hemisphere
34.8
Hippocampus, CA1 nTPM: 92.6
1873
Female, age 85, both hemispheres
151.5
2527
Male, age 74, both hemispheres
104.0
2749
Male, age 80, left hemisphere
76.8
2082
Female, age 91, right hemisphere
72.6
2045
Male, age 76, both hemispheres
58.3
Hippocampus, CA2 nTPM: 122.0
1892
Male, age 76, both hemispheres
169.1
1963
Male, age 80, left hemisphere
133.4
1940
Female, age 85, left hemisphere
118.2
2437
Female, age 94, left hemisphere
115.6
2249
Male, age 74, both hemispheres
104.4
2113
Female, age 91, right hemisphere
91.2
Hippocampus, CA3 nTPM: 62.0
2436
Male, age 74, both hemispheres
93.9
2861
Female, age 67, both hemispheres
72.2
1891
Female, age 85, both hemispheres
58.6
1867
Male, age 76, both hemispheres
57.6
2137
Male, age 80, left hemisphere
53.8
2620
Female, age 94, left hemisphere
36.0
Parahippocampal cortex nTPM: 120.1
2250
Female, age 67, right hemisphere
171.9
2532
Female, age 72, left hemisphere
155.0
2693
Female, age 94, both hemispheres
153.8
2018
Male, age 76, both hemispheres
138.7
2245
Female, age 91, both hemispheres
132.5
1850
Male, age 80, both hemispheres
131.1
1933
Female, age 85, both hemispheres
121.0
2622
Female, age 67, right hemisphere
117.8
1990
Female, age 91, right hemisphere
58.3
2692
Male, age 74, both hemispheres
20.8
Perirhinal gyrus nTPM: 155.3
2521
Female, age 94, right hemisphere
213.5
1794
Male, age 80, right hemisphere
190.8
1841
Female, age 85, right hemisphere
152.6
1847
Female, age 91, left hemisphere
112.4
2848
Male, age 76, right hemisphere
107.0
Subiculum nTPM: 61.9
2729
Female, age 91, right hemisphere
93.9
1977
Female, age 85, both hemispheres
84.8
2619
Male, age 74, both hemispheres
69.7
2042
Male, age 76, both hemispheres
62.1
1901
Male, age 80, both hemispheres
40.1
2438
Female, age 94, left hemisphere
20.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 149.3
Samples: 197
Max nTPM: 683.7
Min nTPM: 5.6
Std nTPM: 125.7
Median nTPM: 110.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
683.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
679.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
607.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
512.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
507.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
495.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
474.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
450.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
440.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
413.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
408.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
394.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
387.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
373.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
359.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
347.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
343.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
343.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
341.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
321.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
299.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
293.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
286.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
278.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
277.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
264.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
264.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
257.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
255.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
254.4
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
252.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
251.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
246.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
246.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
242.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
235.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
234.7
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
233.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
228.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
226.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
226.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
224.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
219.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
216.9
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
208.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
207.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
206.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
203.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
202.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
200.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
198.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
187.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
182.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
182.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
180.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
178.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
178.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
175.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
173.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
172.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
168.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
167.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
165.5
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
162.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
162.5
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
162.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
160.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
159.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
159.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
157.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
155.5
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
155.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
154.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
151.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
149.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
148.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
145.9
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
140.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
137.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
137.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
133.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
133.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
131.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
130.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
129.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
129.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
128.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
127.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
126.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
124.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
123.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
123.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
122.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
121.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
121.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
117.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
112.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
111.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
110.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
107.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
107.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
106.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
105.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
105.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
102.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
101.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
100.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
99.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
99.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
99.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
98.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
97.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
96.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
95.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
95.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
95.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
94.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
94.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
91.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
90.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
90.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
90.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
89.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
89.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
89.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
85.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
84.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
83.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
82.9
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
82.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
82.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
81.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
78.7
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
78.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
78.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
78.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
77.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
73.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
70.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
70.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
69.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
68.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
67.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
66.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
65.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
64.2
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
63.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
63.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
63.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
63.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
61.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
59.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
59.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
59.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
57.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
57.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
56.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
56.0
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
54.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
52.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
52.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
51.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
46.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
45.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
45.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
40.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
39.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
39.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
37.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
36.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
35.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
33.9
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
31.6
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
30.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
30.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
29.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
29.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
29.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
28.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
27.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
26.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
26.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
25.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
25.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
24.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
24.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
23.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
22.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
21.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
20.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
17.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
14.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
13.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
12.8
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
12.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
9.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
5.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
497.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 419.0
Samples: 4
Max nTPM: 459.0
Min nTPM: 382.5
Sample A
Male
426.9
Sample B
Male
459.0
Sample C
Female
407.5
Sample D
Female
382.5
Hippocampal formation nTPM: 497.2
Samples: 4
Max nTPM: 548.6
Min nTPM: 448.3
Sample A
Male
530.4
Sample B
Male
461.3
Sample C
Female
548.6
Sample D
Female
448.3
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.