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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTRH1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
31.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
20.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
19.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
17.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
15.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PTRH1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
26.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
26.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
1.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.5
911
Tumor
1.4
127
Tumor
1.2
571
Tumor
1.2
435
Tumor
1.1
1015
Tumor
1.0
913
Tumor
1.0
171
Tumor
1.0
755
Tumor
1.0
471
Tumor
1.0
557
Tumor
0.9
937
Tumor
0.9
981
Tumor
0.9
267
Tumor
0.8
573
Tumor
0.8
227
Tumor
0.8
635
Tumor
0.8
865
Tumor
0.8
147
Tumor
0.8
361
Tumor
0.7
513
Tumor
0.7
851
Tumor
0.7
741
Tumor
0.7
425
Tumor
0.7
665
Tumor
0.7
615
Tumor
0.7
745
Tumor
0.7
427
Tumor
0.7
627
Tumor
0.6
451
Tumor
0.6
1043
Tumor
0.6
423
Tumor
0.6
867
Tumor
0.6
537
Tumor
0.6
137
Tumor
0.6
715
Tumor
0.5
145
Tumor
0.5
873
Tumor
0.5
365
Tumor
0.5
785
Tumor
0.5
393
Tumor
0.5
433
Tumor
0.5
861
Tumor
0.5
463
Tumor
0.5
411
Tumor
0.5
271
Tumor
0.4
112
Tumor
0.4
525
Tumor
0.4
113
Tumor
0.4
231
Tumor
0.4
257
Tumor
0.4
187
Tumor
0.4
477
Tumor
0.4
395
Tumor
0.4
465
Tumor
0.4
223
Tumor
0.3
823
Tumor
0.3
967
Tumor
0.3
1025
Tumor
0.3
128
Normal
0.3
375
Tumor
0.3
815
Tumor
0.3
125
Tumor
0.3
135
Tumor
0.3
387
Tumor
0.3
367
Tumor
0.3
443
Tumor
0.3
421
Tumor
0.3
123
Tumor
0.3
925
Tumor
0.3
483
Tumor
0.3
185
Tumor
0.3
777
Tumor
0.3
642
Normal
0.2
221
Tumor
0.2
641
Tumor
0.2
126
Normal
0.2
388
Normal
0.2
366
Normal
0.2
436
Normal
0.2
493
Tumor
0.2
261
Tumor
0.2
535
Tumor
0.2
915
Tumor
0.2
1031
Tumor
0.2
161
Tumor
0.2
376
Normal
0.2
663
Tumor
0.2
114
Normal
0.2
357
Tumor
0.1
617
Tumor
0.1
232
Normal
0.1
977
Tumor
0.1
618
Normal
0.1
368
Normal
0.1
517
Tumor
0.1
353
Tumor
0.1
567
Tumor
0.1
685
Tumor
0.1
186
Normal
0.1
975
Tumor
0.1
268
Normal
0.1
363
Tumor
0.1
217
Tumor
0.1
396
Normal
0.1
262
Normal
0.1
546
Normal
0.1
424
Normal
0.1
132
Normal
0.1
487
Tumor
0.1
341
Tumor
0.1
414
Normal
0.1
191
Tumor
0.1
628
Normal
0.1
533
Tumor
0.1
434
Normal
0.1
953
Tumor
0.1
138
Normal
0.1
124
Normal
0.1
391
Tumor
0.1
428
Normal
0.1
298
Normal
0.1
394
Normal
0.1
188
Normal
0.0
528
Normal
0.0
721
Tumor
0.0
467
Tumor
0.0
111
Normal
0.0
258
Normal
0.0
386
Normal
0.0
195
Tumor
0.0
616
Normal
0.0
1045
Tumor
0.0
737
Tumor
0.0
141
Tumor
0.0
426
Normal
0.0
172
Normal
0.0
746
Normal
0.0
278
Normal
0.0
385
Tumor
0.0
213
Tumor
0.0
491
Tumor
0.0
283
Tumor
0.0
277
Tumor
0.0
445
Tumor
0.0
358
Normal
0.0
455
Tumor
0.0
332
Normal
0.0
148
Normal
0.0
313
Tumor
0.0
914
Normal
0.0
456
Normal
0.0
383
Tumor
0.0
432
Normal
0.0
636
Normal
0.0
162
Normal
0.0
863
Tumor
0.0
272
Normal
0.0
464
Normal
0.0
422
Normal
0.0
446
Normal
-0.1
534
Normal
-0.1
568
Normal
-0.1
1042
Normal
-0.1
724
Normal
-0.1
743
Tumor
-0.1
713
Tumor
-0.1
392
Normal
-0.1
864
Normal
-0.1
413
Tumor
-0.1
671
Tumor
-0.1
647
Tumor
-0.1
574
Normal
-0.1
431
Tumor
-0.1
526
Normal
-0.1
883
Tumor
-0.1
384
Normal
-0.1
362
Normal
-0.1
1027
Tumor
-0.1
136
Normal
-0.1
327
Tumor
-0.1
355
Tumor
-0.1
923
Tumor
-0.1
452
Normal
-0.1
285
Tumor
-0.1
222
Normal
-0.1
866
Normal
-0.2
1032
Normal
-0.2
228
Normal
-0.2
461
Tumor
-0.2
224
Normal
-0.2
742
Normal
-0.2
696
Normal
-0.2
874
Normal
-0.2
1021
Tumor
-0.2
146
Normal
-0.2
778
Normal
-0.2
957
Tumor
-0.2
142
Normal
-0.2
312
Normal
-0.2
722
Normal
-0.2
1028
Normal
-0.2
342
Normal
-0.2
1026
Normal
-0.2
218
Normal
-0.2
212
Normal
-0.2
518
Normal
-0.2
881
Tumor
-0.2
444
Normal
-0.2
192
Normal
-0.2
214
Normal
-0.2
564
Normal
-0.2
286
Normal
-0.2
538
Normal
-0.2
352
Normal
-0.3
1022
Normal
-0.3
344
Normal
-0.3
468
Normal
-0.3
868
Normal
-0.3
563
Tumor
-0.3
196
Normal
-0.3
131
Tumor
-0.3
297
Tumor
-0.3
954
Normal
-0.3
727
Tumor
-0.3
786
Normal
-0.3
488
Normal
-0.3
343
Tumor
-0.3
514
Normal
-0.3
1013
Tumor
-0.3
364
Normal
-0.3
1016
Normal
-0.3
284
Normal
-0.3
951
Tumor
-0.3
978
Normal
-0.3
524
Normal
-0.3
572
Normal
-0.4
963
Tumor
-0.4
1014
Normal
-0.4
466
Normal
-0.4
494
Normal
-0.4
968
Normal
-0.4
723
Tumor
-0.4
817
Tumor
-0.4
714
Normal
-0.4
924
Normal
-0.4
728
Normal
-0.4
756
Normal
-0.4
857
Tumor
-0.4
497
Tumor
-0.4
938
Normal
-0.4
516
Normal
-0.4
492
Normal
-0.4
416
Normal
-0.4
862
Normal
-0.4
554
Normal
-0.4
952
Normal
-0.4
884
Normal
-0.4
356
Normal
-0.4
738
Normal
-0.4
354
Normal
-0.4
558
Normal
-0.5
331
Tumor
-0.5
716
Normal
-0.5
412
Normal
-0.5
484
Normal
-0.5
965
Tumor
-0.5
498
Normal
-0.5
955
Tumor
-0.5
515
Tumor
-0.5
482
Normal
-0.5
698
Normal
-0.5
553
Tumor
-0.5
462
Normal
-0.5
211
Tumor
-0.5
912
Normal
-0.5
536
Normal
-0.5
983
Tumor
-0.5
944
Normal
-0.5
976
Normal
-0.5
474
Normal
-0.5
481
Tumor
-0.5
814
Normal
-0.5
662
Normal
-0.5
852
Normal
-0.6
1046
Normal
-0.6
415
Tumor
-0.6
984
Normal
-0.6
878
Normal
-0.6
982
Normal
-0.6
877
Tumor
-0.6
351
Tumor
-0.6
686
Normal
-0.6
958
Normal
-0.6
858
Normal
-0.6
328
Normal
-0.6
672
Normal
-0.6
447
Tumor
-0.6
816
Normal
-0.7
956
Normal
-0.7
478
Normal
-0.7
523
Tumor
-0.7
824
Normal
-0.7
966
Normal
-0.7
918
Normal
-0.7
648
Normal
-0.7
964
Normal
-0.7
744
Normal
-0.7
311
Tumor
-0.7
916
Normal
-0.7
813
Tumor
-0.8
917
Tumor
-0.8
697
Tumor
-0.8
922
Normal
-0.8
545
Tumor
-0.8
882
Normal
-0.8
472
Normal
-0.8
926
Normal
-0.8
664
Normal
-0.8
527
Tumor
-0.9
661
Tumor
-0.9
921
Tumor
-0.9
1044
Normal
-0.9
943
Tumor
-1.0
448
Normal
-1.0
818
Normal
-1.0
666
Normal
-1.0
473
Tumor
-1.2
695
Tumor
-1.2
314
Normal
-1.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.