MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.7 nTPM
HPA Brain:17.4 nTPM
GTEx:16.7 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Pig:7.2 nTPM
Mouse:3.0 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 17.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
2586 Male, age 75, left hemisphere 22.1
1827 Male, age 72, unknown 15.4
2666 Male, age 74, left hemisphere 15.4
2019 Male, age 18, unknown 15.3
2828 Female, age 72, unknown 14.8
2219 Male, age 76, both hemispheres 14.5
1870 Female, age 42, unknown 13.4
2411 Female, age 72, unknown 13.4
1833 Male, age 53, unknown 13.3
1830 Male, age 51, unknown 11.0
Dorsal raphe nucleus
nTPM: 16.7
2047 Male, age 72, unknown 18.9
2298 Female, age 72, unknown 18.8
1828 Male, age 53, unknown 16.7
2750 Male, age 76, both hemispheres 14.7
2016 Female, age 72, unknown 14.3
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 14.3
1848 Female, age 42, unknown 14.0
1890 Male, age 53, unknown 13.0
2849 Male, age 72, unknown 12.2
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 17.3
1795 Male, age 51, unknown 19.9
2502 Female, age 75, unknown 16.6
1947 Male, age 18, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 15.3
1831 Male, age 72, unknown 16.2
1840 Male, age 53, unknown 15.8
2850 Male, age 76, both hemispheres 14.9
2464 Female, age 72, unknown 14.3
Periaquaductal grey, lateral
nTPM: 17.3
2272 Male, age 74, both hemispheres 19.7
2140 Male, age 76, both hemispheres 17.6
2053 Male, age 18, unknown 14.6
Pretectal area
nTPM: 17.4
1816 Male, age 51, unknown 21.9
2007 Male, age 72, unknown 20.2
1944 Female, age 72, unknown 18.1
1815 Male, age 53, unknown 17.8
2273 Male, age 74, both hemispheres 17.4
2316 Male, age 76, right hemisphere 17.1
2667 Female, age 75, unknown 16.4
2407 Male, age 75, both hemispheres 16.2
1817 Female, age 42, unknown 15.9
2825 Male, age 18, unknown 15.4
2224 Female, age 72, unknown 15.0
Red nucleus
nTPM: 15.0
2785 Male, age 18, unknown 18.2
2725 Female, age 75, unknown 17.3
2584 Male, age 75, left hemisphere 16.9
1954 Female, age 42, unknown 15.3
1904 Male, age 53, unknown 14.8
2588 Male, age 74, left hemisphere 14.4
2823 Male, age 76, right hemisphere 14.3
2227 Male, age 72, unknown 14.1
1821 Female, age 72, unknown 14.0
1865 Male, age 51, unknown 13.9
2503 Female, age 72, unknown 13.8
2769 Male, age 72, unknown 12.5
Substantia nigra
nTPM: 16.3
1916 Female, age 42, unknown 19.9
2699 Male, age 18, unknown 18.4
1851 Male, age 51, unknown 18.3
2583 Male, age 75, right hemisphere 17.4
2665 Male, age 74, both hemispheres 17.0
1889 Female, age 72, unknown 16.4
1941 Male, age 53, unknown 15.4
2590 Female, age 75, unknown 14.4
2241 Male, age 72, unknown 13.3
2409 Female, age 72, unknown 13.0
Superior colliculus
nTPM: 16.7
2664 Male, age 75, both hemispheres 20.5
1995 Male, age 72, unknown 18.6
1796 Male, age 53, unknown 17.9
2668 Female, age 75, unknown 17.7
2261 Male, age 18, unknown 16.8
2087 Female, age 72, unknown 16.4
1913 Female, age 42, unknown 16.3
1839 Male, age 51, unknown 14.8
2587 Male, age 74, left hemisphere 14.1
1895 Male, age 76, right hemisphere 13.9
Ventral tegmental area
nTPM: 16.5
2223 Female, age 72, unknown 19.3
2021 Male, age 53, unknown 17.0
2218 Male, age 76, both hemispheres 16.4
1915 Female, age 42, unknown 15.8
1942 Male, age 51, unknown 15.8
2410 Female, age 72, unknown 14.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.7
Samples: 139

Max nTPM: 41.6
Min nTPM: 4.4
Std nTPM: 5.9
Median nTPM: 16.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 41.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 36.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 31.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 30.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 29.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 25.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 24.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 24.4
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.2
Sample A Female 8.2
Sample B Female 7.6
Sample C Male 5.2
Sample D Male 6.2
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 9.9
Min nTPM: 3.0
Sample A Female 9.9
Sample B Female 6.9
Sample C Male 6.8
Sample D Male 3.0
Periaqueductal gray
nTPM: 5.6
Samples: 3

Max nTPM: 6.5
Min nTPM: 5.1
Sample B Female 5.2
Sample C Male 6.5
Sample D Male 5.1
Superior colliculi
nTPM: 7.2
Samples: 4

Max nTPM: 10.5
Min nTPM: 4.6
Sample A Female 7.4
Sample B Female 10.5
Sample C Male 6.3
Sample D Male 4.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.4
Sample A Male 3.3
Sample B Male 3.2
Sample C Female 3.2
Sample D Female 2.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
69202250 Antisense, RP_050324_03_C02, Mouse strain C57BL/6J (56 days, male) 2.5

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