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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ESPN is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
91.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
713.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
370.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
365.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
360.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
326.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
315.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
278.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
268.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
260.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
257.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
240.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
223.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
219.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
218.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
213.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
211.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
211.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
204.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
200.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
197.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
197.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
195.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
190.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
188.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
188.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
184.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
184.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
180.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
180.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
180.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
179.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
177.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
177.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
176.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
176.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
174.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
173.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
173.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
172.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
172.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
172.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
171.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
169.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
169.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
164.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
164.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
163.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
162.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
161.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
161.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
160.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
158.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
158.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
156.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
156.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
155.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
153.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
152.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
152.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
152.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
151.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
149.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
149.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
148.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
147.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
145.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
144.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
142.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
141.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
139.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
139.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
137.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
137.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
136.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
136.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
135.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
135.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
134.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
134.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
133.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
133.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
133.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
133.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
132.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
131.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
129.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
129.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
129.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
129.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
128.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
127.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
127.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
124.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
120.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
120.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
120.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
120.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
118.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
117.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
116.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
116.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
113.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
113.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
112.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
112.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
112.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
111.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
111.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
109.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
109.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
109.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
109.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
109.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
108.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
107.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
107.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
106.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
105.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
105.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
105.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
104.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
103.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
103.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
102.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
101.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
100.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
100.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
98.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
98.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
98.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
97.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
97.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
97.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
95.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
95.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
95.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
94.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
93.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
93.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
93.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
93.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
93.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
92.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
91.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
91.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
90.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
90.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
89.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
86.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
85.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
84.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
83.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
83.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
83.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
82.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
82.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
82.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
81.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
81.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
81.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
81.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
81.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
81.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
80.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
79.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
78.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
78.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
78.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
75.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
75.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
75.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
75.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
74.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
74.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
72.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
71.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
71.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
71.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
70.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
70.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
70.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
69.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
69.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
69.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
69.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
68.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
68.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
67.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
67.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
67.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
66.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
66.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
66.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
66.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
66.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
66.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
66.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
65.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
65.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
63.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
63.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
63.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
62.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
62.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
62.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
61.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
60.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
60.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
60.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
59.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
59.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
59.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
58.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
58.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
58.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
57.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
57.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
57.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
57.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
56.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
56.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
54.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
53.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
53.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
53.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
53.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
53.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
52.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
52.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
52.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
51.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
51.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
51.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
50.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
49.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
49.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
49.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
48.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
47.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
47.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
44.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
44.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
44.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
43.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
42.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
42.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
41.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
41.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
41.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
41.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
39.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
38.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
38.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
38.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
37.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
36.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
35.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
34.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
33.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
32.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
31.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
30.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
28.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
28.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
27.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
23.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
20.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ESPN is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.6
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
122.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
99.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
88.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
81.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
75.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
73.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
73.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
71.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
62.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
61.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
56.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
55.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
49.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
49.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
49.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
44.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
44.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
43.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
42.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
40.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
39.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
37.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
34.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
32.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
32.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
32.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
31.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
30.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
29.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
27.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
25.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
25.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
24.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
21.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
777
Tumor
2.0
481
Tumor
1.7
863
Tumor
1.6
513
Tumor
1.3
785
Tumor
1.2
1027
Tumor
1.1
387
Tumor
1.1
786
Normal
1.1
923
Tumor
1.1
484
Normal
1.0
981
Tumor
1.0
714
Normal
1.0
955
Tumor
1.0
615
Tumor
0.9
365
Tumor
0.9
327
Tumor
0.9
515
Tumor
0.9
727
Tumor
0.9
518
Normal
0.9
137
Tumor
0.8
285
Tumor
0.8
627
Tumor
0.8
915
Tumor
0.8
742
Normal
0.8
1021
Tumor
0.8
462
Normal
0.8
938
Normal
0.8
528
Normal
0.8
554
Normal
0.8
465
Tumor
0.7
1046
Normal
0.7
878
Normal
0.7
534
Normal
0.7
737
Tumor
0.7
824
Normal
0.7
482
Normal
0.7
964
Normal
0.7
1022
Normal
0.7
546
Normal
0.7
436
Normal
0.7
472
Normal
0.7
862
Normal
0.7
922
Normal
0.7
648
Normal
0.7
741
Tumor
0.7
756
Normal
0.7
778
Normal
0.6
918
Normal
0.6
1016
Normal
0.6
884
Normal
0.6
716
Normal
0.6
866
Normal
0.6
526
Normal
0.6
286
Normal
0.6
222
Normal
0.6
882
Normal
0.6
171
Tumor
0.6
723
Tumor
0.6
514
Normal
0.6
1014
Normal
0.6
664
Normal
0.6
912
Normal
0.5
341
Tumor
0.5
868
Normal
0.5
982
Normal
0.5
1028
Normal
0.5
412
Normal
0.5
944
Normal
0.5
628
Normal
0.5
391
Tumor
0.5
926
Normal
0.5
1026
Normal
0.5
423
Tumor
0.5
746
Normal
0.5
858
Normal
0.5
428
Normal
0.5
1032
Normal
0.5
111
Normal
0.5
978
Normal
0.5
874
Normal
0.5
952
Normal
0.4
666
Normal
0.4
123
Tumor
0.4
635
Tumor
0.4
474
Normal
0.4
958
Normal
0.4
698
Normal
0.4
212
Normal
0.4
916
Normal
0.4
618
Normal
0.4
527
Tumor
0.4
968
Normal
0.4
616
Normal
0.4
818
Normal
0.4
924
Normal
0.4
466
Normal
0.4
738
Normal
0.4
136
Normal
0.4
568
Normal
0.4
131
Tumor
0.4
258
Normal
0.4
864
Normal
0.4
298
Normal
0.4
558
Normal
0.3
722
Normal
0.3
396
Normal
0.3
364
Normal
0.3
416
Normal
0.3
852
Normal
0.3
572
Normal
0.3
696
Normal
0.3
914
Normal
0.3
132
Normal
0.3
755
Tumor
0.3
196
Normal
0.3
415
Tumor
0.3
414
Normal
0.3
464
Normal
0.3
448
Normal
0.3
432
Normal
0.3
976
Normal
0.3
728
Normal
0.3
451
Tumor
0.3
218
Normal
0.3
328
Normal
0.3
816
Normal
0.3
426
Normal
0.3
1042
Normal
0.3
516
Normal
0.3
461
Tumor
0.3
114
Normal
0.3
686
Normal
0.2
261
Tumor
0.2
376
Normal
0.2
966
Normal
0.2
883
Tumor
0.2
523
Tumor
0.2
424
Normal
0.2
452
Normal
0.2
142
Normal
0.2
388
Normal
0.2
172
Normal
0.2
1013
Tumor
0.2
356
Normal
0.2
394
Normal
0.2
488
Normal
0.2
564
Normal
0.2
913
Tumor
0.2
1044
Normal
0.2
228
Normal
0.2
162
Normal
0.2
128
Normal
0.2
277
Tumor
0.2
533
Tumor
0.2
367
Tumor
0.2
1015
Tumor
0.2
954
Normal
0.2
314
Normal
0.2
642
Normal
0.2
977
Tumor
0.2
148
Normal
0.2
433
Tumor
0.2
1045
Tumor
0.2
361
Tumor
0.1
867
Tumor
0.1
422
Normal
0.1
494
Normal
0.1
362
Normal
0.1
721
Tumor
0.1
267
Tumor
0.1
392
Normal
0.1
368
Normal
0.1
1031
Tumor
0.1
574
Normal
0.1
647
Tumor
0.1
483
Tumor
0.1
553
Tumor
0.1
284
Normal
0.1
271
Tumor
0.1
873
Tumor
0.1
232
Normal
0.1
571
Tumor
0.1
921
Tumor
0.1
456
Normal
0.1
141
Tumor
0.1
724
Normal
0.0
386
Normal
0.0
366
Normal
0.0
113
Tumor
0.0
312
Normal
0.0
492
Normal
0.0
262
Normal
0.0
217
Tumor
0.0
138
Normal
0.0
413
Tumor
0.0
937
Tumor
0.0
358
Normal
0.0
851
Tumor
0.0
963
Tumor
0.0
393
Tumor
0.0
446
Normal
0.0
662
Normal
-0.1
272
Normal
-0.1
953
Tumor
-0.1
278
Normal
-0.1
186
Normal
-0.1
498
Normal
-0.1
468
Normal
-0.1
956
Normal
-0.1
951
Tumor
-0.1
665
Tumor
-0.1
268
Normal
-0.1
984
Normal
-0.1
943
Tumor
-0.1
636
Normal
-0.1
661
Tumor
-0.1
185
Tumor
-0.1
332
Normal
-0.1
487
Tumor
-0.2
214
Normal
-0.2
342
Normal
-0.2
477
Tumor
-0.2
911
Tumor
-0.2
126
Normal
-0.2
434
Normal
-0.2
188
Normal
-0.2
224
Normal
-0.2
877
Tumor
-0.2
395
Tumor
-0.2
124
Normal
-0.2
881
Tumor
-0.2
641
Tumor
-0.2
363
Tumor
-0.2
715
Tumor
-0.2
411
Tumor
-0.3
925
Tumor
-0.3
147
Tumor
-0.3
975
Tumor
-0.3
663
Tumor
-0.3
813
Tumor
-0.3
445
Tumor
-0.3
353
Tumor
-0.3
967
Tumor
-0.3
493
Tumor
-0.3
538
Normal
-0.3
695
Tumor
-0.3
221
Tumor
-0.4
473
Tumor
-0.4
352
Normal
-0.4
685
Tumor
-0.4
524
Normal
-0.4
146
Normal
-0.4
814
Normal
-0.4
545
Tumor
-0.4
444
Normal
-0.4
357
Tumor
-0.4
563
Tumor
-0.4
435
Tumor
-0.4
857
Tumor
-0.4
743
Tumor
-0.4
455
Tumor
-0.4
478
Normal
-0.4
447
Tumor
-0.5
671
Tumor
-0.5
744
Normal
-0.5
231
Tumor
-0.5
344
Normal
-0.5
354
Normal
-0.6
1043
Tumor
-0.6
557
Tumor
-0.6
431
Tumor
-0.6
443
Tumor
-0.6
817
Tumor
-0.6
195
Tumor
-0.6
672
Normal
-0.7
471
Tumor
-0.7
525
Tumor
-0.7
384
Normal
-0.7
187
Tumor
-0.7
1041
Tumor
-0.7
865
Tumor
-0.8
713
Tumor
-0.8
192
Normal
-0.8
536
Normal
-0.8
112
Tumor
-0.8
463
Tumor
-0.8
1025
Tumor
-0.8
297
Tumor
-0.9
697
Tumor
-0.9
257
Tumor
-0.9
161
Tumor
-1.0
351
Tumor
-1.0
497
Tumor
-1.0
861
Tumor
-1.0
965
Tumor
-1.1
145
Tumor
-1.1
127
Tumor
-1.1
617
Tumor
-1.1
823
Tumor
-1.1
213
Tumor
-1.1
421
Tumor
-1.2
983
Tumor
-1.2
375
Tumor
-1.2
331
Tumor
-1.2
223
Tumor
-1.2
491
Tumor
-1.3
227
Tumor
-1.3
355
Tumor
-1.3
537
Tumor
-1.3
517
Tumor
-1.3
313
Tumor
-1.4
573
Tumor
-1.4
191
Tumor
-1.4
467
Tumor
-1.4
957
Tumor
-1.5
745
Tumor
-1.6
383
Tumor
-1.6
125
Tumor
-1.6
135
Tumor
-1.7
567
Tumor
-1.7
917
Tumor
-1.7
385
Tumor
-1.7
283
Tumor
-1.8
427
Tumor
-1.8
311
Tumor
-1.9
425
Tumor
-2.3
535
Tumor
-2.4
211
Tumor
-2.6
343
Tumor
-2.6
815
Tumor
-3.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
