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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPARA is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
13.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPARA is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
231
Samples
Sample
Description
TPM
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
35.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
34.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
33.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
26.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
23.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
22.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
3.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
514
Normal
1.3
465
Tumor
1.1
487
Tumor
1.0
331
Tumor
1.0
924
Normal
0.9
878
Normal
0.9
912
Normal
0.9
636
Normal
0.9
314
Normal
0.8
313
Tumor
0.8
915
Tumor
0.8
911
Tumor
0.8
913
Tumor
0.8
723
Tumor
0.7
742
Normal
0.7
526
Normal
0.7
517
Tumor
0.7
615
Tumor
0.7
488
Normal
0.7
616
Normal
0.6
452
Normal
0.6
546
Normal
0.6
884
Normal
0.6
642
Normal
0.6
914
Normal
0.5
513
Tumor
0.5
922
Normal
0.5
312
Normal
0.5
332
Normal
0.5
744
Normal
0.5
524
Normal
0.5
277
Tumor
0.5
721
Tumor
0.5
516
Normal
0.4
881
Tumor
0.4
456
Normal
0.4
738
Normal
0.4
716
Normal
0.4
926
Normal
0.4
966
Normal
0.4
466
Normal
0.4
484
Normal
0.4
534
Normal
0.4
925
Tumor
0.3
714
Normal
0.3
128
Normal
0.3
958
Normal
0.3
695
Tumor
0.3
554
Normal
0.3
964
Normal
0.3
867
Tumor
0.3
628
Normal
0.3
468
Normal
0.3
464
Normal
0.3
278
Normal
0.3
864
Normal
0.3
755
Tumor
0.3
746
Normal
0.2
883
Tumor
0.2
112
Tumor
0.2
868
Normal
0.2
882
Normal
0.2
685
Tumor
0.2
232
Normal
0.2
873
Tumor
0.2
298
Normal
0.2
483
Tumor
0.2
722
Normal
0.2
877
Tumor
0.2
862
Normal
0.2
518
Normal
0.2
451
Tumor
0.2
493
Tumor
0.1
618
Normal
0.1
713
Tumor
0.1
741
Tumor
0.1
953
Tumor
0.1
111
Normal
0.1
918
Normal
0.1
756
Normal
0.1
126
Normal
0.1
728
Normal
0.1
627
Tumor
0.1
696
Normal
0.1
686
Normal
0.1
114
Normal
0.1
124
Normal
0.1
778
Normal
0.1
968
Normal
0.1
938
Normal
0.0
865
Tumor
0.0
262
Normal
0.0
498
Normal
0.0
494
Normal
0.0
724
Normal
0.0
727
Tumor
0.0
261
Tumor
0.0
528
Normal
0.0
866
Normal
0.0
786
Normal
0.0
785
Tumor
0.0
715
Tumor
0.0
523
Tumor
-0.1
463
Tumor
-0.1
967
Tumor
-0.1
916
Normal
-0.1
921
Tumor
-0.1
641
Tumor
-0.1
976
Normal
-0.1
956
Normal
-0.1
617
Tumor
-0.2
874
Normal
-0.2
125
Tumor
-0.2
515
Tumor
-0.2
113
Tumor
-0.2
272
Normal
-0.2
267
Tumor
-0.2
538
Normal
-0.2
127
Tumor
-0.3
123
Tumor
-0.3
777
Tumor
-0.3
954
Normal
-0.3
271
Tumor
-0.3
937
Tumor
-0.3
268
Normal
-0.3
492
Normal
-0.3
923
Tumor
-0.3
813
Tumor
-0.3
944
Normal
-0.3
814
Normal
-0.3
951
Tumor
-0.4
258
Normal
-0.4
957
Tumor
-0.4
745
Tumor
-0.4
491
Tumor
-0.4
952
Normal
-0.4
978
Normal
-0.4
231
Tumor
-0.5
737
Tumor
-0.5
533
Tumor
-0.5
984
Normal
-0.5
1016
Normal
-0.5
525
Tumor
-0.5
955
Tumor
-0.5
743
Tumor
-0.5
943
Tumor
-0.5
467
Tumor
-0.6
1014
Normal
-0.6
981
Tumor
-0.6
257
Tumor
-0.6
917
Tumor
-0.6
537
Tumor
-0.6
977
Tumor
-0.6
497
Tumor
-0.6
863
Tumor
-0.6
982
Normal
-0.7
527
Tumor
-0.7
963
Tumor
-0.8
975
Tumor
-0.8
861
Tumor
-0.8
545
Tumor
-0.9
635
Tumor
-0.9
965
Tumor
-0.9
553
Tumor
-0.9
455
Tumor
-0.9
1015
Tumor
-1.0
1013
Tumor
-1.2
311
Tumor
-1.3
983
Tumor
-1.4
297
Tumor
-2.1
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
353
Tumor
N/A
474
Normal
N/A
354
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
