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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POFUT2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
8.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POFUT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
33.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
29.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
26.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
6.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
285
Tumor
1.2
983
Tumor
1.2
743
Tumor
1.0
815
Tumor
0.9
391
Tumor
0.9
363
Tumor
0.9
813
Tumor
0.9
567
Tumor
0.8
351
Tumor
0.8
341
Tumor
0.8
727
Tumor
0.7
387
Tumor
0.7
367
Tumor
0.7
261
Tumor
0.7
671
Tumor
0.7
647
Tumor
0.6
925
Tumor
0.6
421
Tumor
0.5
473
Tumor
0.5
921
Tumor
0.5
535
Tumor
0.4
425
Tumor
0.4
746
Normal
0.4
354
Normal
0.4
232
Normal
0.4
487
Tumor
0.4
615
Tumor
0.4
257
Tumor
0.4
332
Normal
0.4
863
Tumor
0.4
331
Tumor
0.4
342
Normal
0.4
376
Normal
0.4
517
Tumor
0.4
463
Tumor
0.4
227
Tumor
0.3
573
Tumor
0.3
343
Tumor
0.3
186
Normal
0.3
723
Tumor
0.3
866
Normal
0.3
148
Normal
0.3
737
Tumor
0.3
195
Tumor
0.3
1045
Tumor
0.3
554
Normal
0.3
368
Normal
0.3
426
Normal
0.3
878
Normal
0.3
452
Normal
0.3
465
Tumor
0.2
956
Normal
0.2
636
Normal
0.2
283
Tumor
0.2
218
Normal
0.2
262
Normal
0.2
443
Tumor
0.2
448
Normal
0.2
955
Tumor
0.2
778
Normal
0.2
686
Normal
0.2
616
Normal
0.2
738
Normal
0.2
877
Tumor
0.2
162
Normal
0.2
445
Tumor
0.2
412
Normal
0.2
137
Tumor
0.2
851
Tumor
0.2
422
Normal
0.2
125
Tumor
0.2
714
Normal
0.2
917
Tumor
0.2
642
Normal
0.2
728
Normal
0.2
131
Tumor
0.2
536
Normal
0.2
696
Normal
0.2
128
Normal
0.2
431
Tumor
0.2
546
Normal
0.2
628
Normal
0.2
572
Normal
0.2
785
Tumor
0.2
142
Normal
0.2
951
Tumor
0.2
468
Normal
0.2
388
Normal
0.2
384
Normal
0.2
944
Normal
0.2
352
Normal
0.2
272
Normal
0.2
912
Normal
0.2
258
Normal
0.2
484
Normal
0.2
661
Tumor
0.2
568
Normal
0.2
286
Normal
0.2
786
Normal
0.2
221
Tumor
0.2
574
Normal
0.2
358
Normal
0.2
298
Normal
0.2
297
Tumor
0.2
394
Normal
0.1
414
Normal
0.1
314
Normal
0.1
196
Normal
0.1
1022
Normal
0.1
366
Normal
0.1
864
Normal
0.1
344
Normal
0.1
172
Normal
0.1
545
Tumor
0.1
862
Normal
0.1
392
Normal
0.1
494
Normal
0.1
277
Tumor
0.1
526
Normal
0.1
816
Normal
0.1
1044
Normal
0.1
648
Normal
0.1
662
Normal
0.1
744
Normal
0.1
756
Normal
0.1
698
Normal
0.1
663
Tumor
0.1
922
Normal
0.1
132
Normal
0.1
424
Normal
0.1
742
Normal
0.1
278
Normal
0.1
111
Normal
0.1
716
Normal
0.1
525
Tumor
0.1
814
Normal
0.1
1032
Normal
0.1
362
Normal
0.1
695
Tumor
0.1
1043
Tumor
0.1
1026
Normal
0.1
558
Normal
0.1
188
Normal
0.1
882
Normal
0.1
1021
Tumor
0.1
185
Tumor
0.1
968
Normal
0.1
428
Normal
0.1
818
Normal
0.1
456
Normal
0.1
214
Normal
0.1
874
Normal
0.1
528
Normal
0.1
312
Normal
0.1
268
Normal
0.1
356
Normal
0.1
852
Normal
0.1
537
Tumor
0.1
466
Normal
0.1
446
Normal
0.1
464
Normal
0.0
664
Normal
0.0
114
Normal
0.0
952
Normal
0.0
192
Normal
0.0
423
Tumor
0.0
147
Tumor
0.0
918
Normal
0.0
924
Normal
0.0
618
Normal
0.0
228
Normal
0.0
222
Normal
0.0
436
Normal
0.0
365
Tumor
0.0
136
Normal
0.0
357
Tumor
0.0
127
Tumor
0.0
722
Normal
0.0
212
Normal
0.0
113
Tumor
0.0
534
Normal
0.0
146
Normal
0.0
386
Normal
0.0
482
Normal
0.0
926
Normal
0.0
415
Tumor
0.0
138
Normal
0.0
745
Tumor
0.0
873
Tumor
0.0
396
Normal
0.0
217
Tumor
0.0
432
Normal
0.0
858
Normal
0.0
916
Normal
0.0
923
Tumor
0.0
564
Normal
0.0
124
Normal
0.0
984
Normal
0.0
364
Normal
0.0
444
Normal
0.0
1014
Normal
0.0
518
Normal
0.0
481
Tumor
0.0
627
Tumor
0.0
824
Normal
0.0
462
Normal
-0.1
943
Tumor
-0.1
527
Tumor
-0.1
284
Normal
-0.1
672
Normal
-0.1
516
Normal
-0.1
361
Tumor
-0.1
884
Normal
-0.1
965
Tumor
-0.1
981
Tumor
-0.1
313
Tumor
-0.1
883
Tumor
-0.1
937
Tumor
-0.1
1042
Normal
-0.1
1025
Tumor
-0.1
617
Tumor
-0.1
538
Normal
-0.1
938
Normal
-0.1
416
Normal
-0.1
455
Tumor
-0.1
447
Tumor
-0.1
1016
Normal
-0.1
741
Tumor
-0.1
666
Normal
-0.1
478
Normal
-0.1
328
Normal
-0.1
224
Normal
-0.1
685
Tumor
-0.1
488
Normal
-0.1
515
Tumor
-0.1
868
Normal
-0.1
497
Tumor
-0.1
524
Normal
-0.1
112
Tumor
-0.1
126
Normal
-0.1
911
Tumor
-0.1
161
Tumor
-0.1
271
Tumor
-0.1
383
Tumor
-0.1
474
Normal
-0.1
958
Normal
-0.1
1046
Normal
-0.1
492
Normal
-0.2
514
Normal
-0.2
865
Tumor
-0.2
966
Normal
-0.2
498
Normal
-0.2
311
Tumor
-0.2
491
Tumor
-0.2
914
Normal
-0.2
976
Normal
-0.2
1028
Normal
-0.2
434
Normal
-0.2
755
Tumor
-0.2
563
Tumor
-0.2
413
Tumor
-0.2
187
Tumor
-0.2
982
Normal
-0.2
857
Tumor
-0.2
472
Normal
-0.2
433
Tumor
-0.2
715
Tumor
-0.2
231
Tumor
-0.3
145
Tumor
-0.3
881
Tumor
-0.3
451
Tumor
-0.3
954
Normal
-0.3
395
Tumor
-0.3
697
Tumor
-0.3
913
Tumor
-0.3
393
Tumor
-0.3
135
Tumor
-0.3
523
Tumor
-0.3
553
Tumor
-0.3
713
Tumor
-0.3
223
Tumor
-0.3
724
Normal
-0.3
213
Tumor
-0.3
385
Tumor
-0.4
327
Tumor
-0.4
375
Tumor
-0.4
477
Tumor
-0.4
355
Tumor
-0.4
353
Tumor
-0.4
211
Tumor
-0.4
141
Tumor
-0.4
978
Normal
-0.4
777
Tumor
-0.4
513
Tumor
-0.4
493
Tumor
-0.4
1031
Tumor
-0.5
967
Tumor
-0.5
461
Tumor
-0.5
1015
Tumor
-0.5
483
Tumor
-0.5
435
Tumor
-0.5
467
Tumor
-0.5
1013
Tumor
-0.5
915
Tumor
-0.5
191
Tumor
-0.5
721
Tumor
-0.6
964
Normal
-0.6
641
Tumor
-0.6
1041
Tumor
-0.6
171
Tumor
-0.6
861
Tumor
-0.6
975
Tumor
-0.6
665
Tumor
-0.6
471
Tumor
-0.7
571
Tumor
-0.7
823
Tumor
-0.7
427
Tumor
-0.7
267
Tumor
-0.7
635
Tumor
-0.8
123
Tumor
-0.8
817
Tumor
-0.8
867
Tumor
-0.8
963
Tumor
-0.9
557
Tumor
-0.9
411
Tumor
-0.9
1027
Tumor
-1.0
953
Tumor
-1.0
977
Tumor
-1.0
957
Tumor
-1.1
533
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
