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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
2.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LILRB4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
377.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
100.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
92.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
72.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
59.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
37.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
2.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
2.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.9
211
Tumor
1.3
978
Normal
1.3
573
Tumor
1.3
916
Normal
1.3
724
Normal
1.3
524
Normal
1.2
434
Normal
1.2
917
Tumor
1.2
528
Normal
1.1
391
Tumor
1.1
984
Normal
1.1
217
Tumor
1.1
558
Normal
1.0
415
Tumor
1.0
343
Tumor
0.9
1031
Tumor
0.9
354
Normal
0.9
518
Normal
0.9
498
Normal
0.8
491
Tumor
0.8
421
Tumor
0.8
142
Normal
0.8
492
Normal
0.8
514
Normal
0.8
538
Normal
0.8
954
Normal
0.8
344
Normal
0.8
283
Tumor
0.7
218
Normal
0.7
546
Normal
0.7
721
Tumor
0.7
192
Normal
0.7
554
Normal
0.7
392
Normal
0.7
914
Normal
0.7
926
Normal
0.7
195
Tumor
0.6
141
Tumor
0.6
222
Normal
0.6
468
Normal
0.6
213
Tumor
0.6
224
Normal
0.6
124
Normal
0.6
467
Tumor
0.6
534
Normal
0.6
191
Tumor
0.6
983
Tumor
0.6
388
Normal
0.5
525
Tumor
0.5
918
Normal
0.5
212
Normal
0.5
396
Normal
0.5
363
Tumor
0.5
146
Normal
0.5
925
Tumor
0.5
394
Normal
0.5
1015
Tumor
0.5
672
Normal
0.5
686
Normal
0.5
456
Normal
0.4
696
Normal
0.4
362
Normal
0.4
1042
Normal
0.4
728
Normal
0.4
878
Normal
0.4
722
Normal
0.4
714
Normal
0.4
494
Normal
0.4
1016
Normal
0.4
214
Normal
0.4
126
Normal
0.4
416
Normal
0.4
196
Normal
0.4
851
Tumor
0.4
716
Normal
0.4
138
Normal
0.4
368
Normal
0.4
482
Normal
0.4
478
Normal
0.4
114
Normal
0.4
636
Normal
0.3
376
Normal
0.3
136
Normal
0.3
132
Normal
0.3
135
Tumor
0.3
574
Normal
0.3
284
Normal
0.3
628
Normal
0.3
464
Normal
0.3
526
Normal
0.3
125
Tumor
0.3
713
Tumor
0.3
375
Tumor
0.3
516
Normal
0.3
912
Normal
0.3
814
Normal
0.3
535
Tumor
0.3
664
Normal
0.3
353
Tumor
0.3
187
Tumor
0.3
1014
Normal
0.2
185
Tumor
0.2
536
Normal
0.2
813
Tumor
0.2
366
Normal
0.2
697
Tumor
0.2
352
Normal
0.2
553
Tumor
0.2
671
Tumor
0.2
188
Normal
0.2
666
Normal
0.2
883
Tumor
0.2
422
Normal
0.2
955
Tumor
0.2
111
Normal
0.2
228
Normal
0.2
778
Normal
0.2
1028
Normal
0.2
715
Tumor
0.2
642
Normal
0.2
488
Normal
0.2
952
Normal
0.1
432
Normal
0.1
563
Tumor
0.1
386
Normal
0.1
127
Tumor
0.1
662
Normal
0.1
221
Tumor
0.1
286
Normal
0.1
384
Normal
0.1
474
Normal
0.1
915
Tumor
0.1
412
Normal
0.1
564
Normal
0.1
387
Tumor
0.1
953
Tumor
0.1
698
Normal
0.1
1044
Normal
0.1
568
Normal
0.1
884
Normal
0.1
858
Normal
0.1
517
Tumor
0.1
572
Normal
0.1
857
Tumor
0.1
557
Tumor
0.1
481
Tumor
0.1
617
Tumor
0.1
493
Tumor
0.1
882
Normal
0.1
358
Normal
0.1
924
Normal
0.1
145
Tumor
0.1
383
Tumor
0.0
742
Normal
0.0
1026
Normal
0.0
852
Normal
0.0
452
Normal
0.0
877
Tumor
0.0
648
Normal
0.0
451
Tumor
0.0
113
Tumor
0.0
515
Tumor
0.0
385
Tumor
0.0
816
Normal
0.0
523
Tumor
0.0
537
Tumor
0.0
365
Tumor
0.0
956
Normal
0.0
472
Normal
0.0
448
Normal
0.0
424
Normal
0.0
1046
Normal
0.0
513
Tumor
0.0
172
Normal
0.0
356
Normal
0.0
824
Normal
0.0
223
Tumor
0.0
455
Tumor
0.0
148
Normal
0.0
618
Normal
0.0
328
Normal
0.0
342
Normal
0.0
756
Normal
0.0
128
Normal
0.0
685
Tumor
0.0
723
Tumor
-0.1
355
Tumor
-0.1
462
Normal
-0.1
367
Tumor
-0.1
161
Tumor
-0.1
162
Normal
-0.1
1043
Tumor
-0.1
913
Tumor
-0.1
818
Normal
-0.1
186
Normal
-0.1
823
Tumor
-0.1
395
Tumor
-0.1
1045
Tumor
-0.1
447
Tumor
-0.1
461
Tumor
-0.1
364
Normal
-0.1
137
Tumor
-0.1
471
Tumor
-0.2
466
Normal
-0.2
463
Tumor
-0.2
944
Normal
-0.2
665
Tumor
-0.2
746
Normal
-0.2
112
Tumor
-0.2
738
Normal
-0.2
815
Tumor
-0.2
423
Tumor
-0.3
938
Normal
-0.3
428
Normal
-0.3
786
Normal
-0.3
881
Tumor
-0.3
533
Tumor
-0.3
1022
Normal
-0.3
817
Tumor
-0.3
943
Tumor
-0.3
147
Tumor
-0.3
616
Normal
-0.3
727
Tumor
-0.3
755
Tumor
-0.3
695
Tumor
-0.3
923
Tumor
-0.4
444
Normal
-0.4
446
Normal
-0.4
567
Tumor
-0.4
951
Tumor
-0.4
663
Tumor
-0.4
484
Normal
-0.4
227
Tumor
-0.4
922
Normal
-0.4
745
Tumor
-0.4
744
Normal
-0.4
1032
Normal
-0.5
641
Tumor
-0.5
627
Tumor
-0.5
131
Tumor
-0.5
785
Tumor
-0.5
911
Tumor
-0.5
123
Tumor
-0.5
171
Tumor
-0.5
433
Tumor
-0.5
361
Tumor
-0.5
545
Tumor
-0.5
1041
Tumor
-0.6
393
Tumor
-0.6
285
Tumor
-0.6
357
Tumor
-0.6
527
Tumor
-0.6
351
Tumor
-0.6
436
Normal
-0.6
327
Tumor
-0.6
487
Tumor
-0.6
977
Tumor
-0.7
571
Tumor
-0.7
982
Normal
-0.7
483
Tumor
-0.7
473
Tumor
-0.7
647
Tumor
-0.7
426
Normal
-0.7
341
Tumor
-0.7
1027
Tumor
-0.8
777
Tumor
-0.8
477
Tumor
-0.8
937
Tumor
-0.8
497
Tumor
-0.8
427
Tumor
-0.8
741
Tumor
-0.9
615
Tumor
-0.9
413
Tumor
-0.9
411
Tumor
-0.9
414
Normal
-0.9
465
Tumor
-1.0
635
Tumor
-1.0
1013
Tumor
-1.3
1021
Tumor
-1.3
1025
Tumor
-1.3
737
Tumor
-1.4
425
Tumor
-1.4
443
Tumor
-1.4
431
Tumor
-1.4
921
Tumor
-1.7
981
Tumor
-1.8
445
Tumor
-1.9
743
Tumor
-2.1
435
Tumor
-2.4
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
866
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
