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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2H is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
84.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
71.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
68.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
61.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
60.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
58.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
46.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
44.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
43.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
43.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
42.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
41.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
41.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
38.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
38.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
38.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
37.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
37.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
36.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
36.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
34.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
33.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
32.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
32.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
31.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
30.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
27.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
27.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
26.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
26.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
26.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
25.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
24.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
24.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
24.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
24.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
23.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
23.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
22.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
22.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
21.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
21.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
21.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
20.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
19.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
19.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
19.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
19.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
17.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
17.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
17.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
16.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
16.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
16.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
12.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
10.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBE2H is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
23.4
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
60.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
60.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
58.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
51.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
48.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
48.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
42.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
38.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
35.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
33.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
32.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
31.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
31.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
30.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
29.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
29.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
26.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
26.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
25.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
25.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
25.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
24.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
24.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
23.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
23.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
22.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
21.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
21.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
21.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
20.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
19.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
14.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.3
375
Tumor
1.2
851
Tumor
1.0
745
Tumor
1.0
483
Tumor
0.9
1027
Tumor
0.9
327
Tumor
0.9
481
Tumor
0.9
137
Tumor
0.8
743
Tumor
0.8
911
Tumor
0.8
283
Tumor
0.8
493
Tumor
0.8
515
Tumor
0.7
257
Tumor
0.7
777
Tumor
0.7
415
Tumor
0.6
863
Tumor
0.6
285
Tumor
0.6
537
Tumor
0.6
727
Tumor
0.5
915
Tumor
0.5
975
Tumor
0.5
425
Tumor
0.5
513
Tumor
0.5
1043
Tumor
0.5
641
Tumor
0.4
917
Tumor
0.4
497
Tumor
0.4
567
Tumor
0.4
113
Tumor
0.4
943
Tumor
0.4
517
Tumor
0.4
365
Tumor
0.4
953
Tumor
0.4
1031
Tumor
0.4
617
Tumor
0.4
416
Normal
0.3
231
Tumor
0.3
755
Tumor
0.3
963
Tumor
0.3
728
Normal
0.3
881
Tumor
0.3
715
Tumor
0.3
471
Tumor
0.3
553
Tumor
0.3
737
Tumor
0.3
271
Tumor
0.3
455
Tumor
0.3
221
Tumor
0.3
861
Tumor
0.2
223
Tumor
0.2
131
Tumor
0.2
445
Tumor
0.2
723
Tumor
0.2
1045
Tumor
0.2
955
Tumor
0.2
451
Tumor
0.2
1042
Normal
0.2
212
Normal
0.2
461
Tumor
0.2
387
Tumor
0.2
977
Tumor
0.2
635
Tumor
0.2
435
Tumor
0.2
742
Normal
0.2
785
Tumor
0.2
852
Normal
0.2
738
Normal
0.1
916
Normal
0.1
527
Tumor
0.1
873
Tumor
0.1
867
Tumor
0.1
472
Normal
0.1
981
Tumor
0.1
363
Tumor
0.1
125
Tumor
0.1
573
Tumor
0.1
921
Tumor
0.1
311
Tumor
0.1
514
Normal
0.1
462
Normal
0.1
328
Normal
0.1
786
Normal
0.1
286
Normal
0.1
857
Tumor
0.1
978
Normal
0.1
528
Normal
0.1
661
Tumor
0.1
884
Normal
0.1
356
Normal
0.1
966
Normal
0.1
482
Normal
0.1
385
Tumor
0.1
956
Normal
0.1
535
Tumor
0.1
982
Normal
0.1
227
Tumor
0.1
518
Normal
0.1
697
Tumor
0.1
816
Normal
0.0
262
Normal
0.0
1016
Normal
0.0
862
Normal
0.0
815
Tumor
0.0
918
Normal
0.0
1015
Tumor
0.0
494
Normal
0.0
865
Tumor
0.0
1044
Normal
0.0
412
Normal
0.0
713
Tumor
0.0
756
Normal
0.0
824
Normal
0.0
284
Normal
0.0
685
Tumor
0.0
213
Tumor
0.0
724
Normal
0.0
1021
Tumor
0.0
858
Normal
0.0
484
Normal
0.0
516
Normal
0.0
523
Tumor
0.0
913
Tumor
0.0
268
Normal
0.0
533
Tumor
0.0
211
Tumor
0.0
665
Tumor
0.0
926
Normal
0.0
188
Normal
0.0
864
Normal
0.0
127
Tumor
-0.1
616
Normal
-0.1
1026
Normal
-0.1
818
Normal
-0.1
1013
Tumor
-0.1
228
Normal
-0.1
952
Normal
-0.1
224
Normal
-0.1
882
Normal
-0.1
261
Tumor
-0.1
958
Normal
-0.1
411
Tumor
-0.1
1028
Normal
-0.1
627
Tumor
-0.1
964
Normal
-0.1
536
Normal
-0.1
924
Normal
-0.1
938
Normal
-0.1
877
Tumor
-0.1
923
Tumor
-0.1
868
Normal
-0.1
778
Normal
-0.1
145
Tumor
-0.1
448
Normal
-0.1
498
Normal
-0.1
391
Tumor
-0.1
364
Normal
-0.1
351
Tumor
-0.1
492
Normal
-0.1
353
Tumor
-0.1
534
Normal
-0.1
386
Normal
-0.1
546
Normal
-0.1
171
Tumor
-0.1
883
Tumor
-0.1
741
Tumor
-0.1
136
Normal
-0.1
1046
Normal
-0.1
1022
Normal
-0.1
714
Normal
-0.1
968
Normal
-0.1
944
Normal
-0.2
866
Normal
-0.2
914
Normal
-0.2
297
Tumor
-0.2
123
Tumor
-0.2
874
Normal
-0.2
128
Normal
-0.2
558
Normal
-0.2
526
Normal
-0.2
126
Normal
-0.2
447
Tumor
-0.2
878
Normal
-0.2
187
Tumor
-0.2
746
Normal
-0.2
628
Normal
-0.2
615
Tumor
-0.2
464
Normal
-0.2
722
Normal
-0.2
477
Tumor
-0.2
912
Normal
-0.2
524
Normal
-0.2
983
Tumor
-0.2
716
Normal
-0.2
538
Normal
-0.2
545
Tumor
-0.2
698
Normal
-0.2
114
Normal
-0.2
951
Tumor
-0.2
976
Normal
-0.2
272
Normal
-0.2
474
Normal
-0.2
218
Normal
-0.2
142
Normal
-0.2
557
Tumor
-0.2
1032
Normal
-0.2
185
Tumor
-0.2
361
Tumor
-0.2
937
Tumor
-0.2
466
Normal
-0.2
1025
Tumor
-0.2
313
Tumor
-0.2
141
Tumor
-0.2
195
Tumor
-0.2
1014
Normal
-0.2
258
Normal
-0.2
427
Tumor
-0.3
217
Tumor
-0.3
744
Normal
-0.3
965
Tumor
-0.3
467
Tumor
-0.3
434
Normal
-0.3
111
Normal
-0.3
696
Normal
-0.3
362
Normal
-0.3
642
Normal
-0.3
388
Normal
-0.3
433
Tumor
-0.3
436
Normal
-0.3
954
Normal
-0.3
488
Normal
-0.3
135
Tumor
-0.3
491
Tumor
-0.3
162
Normal
-0.3
414
Normal
-0.3
186
Normal
-0.3
814
Normal
-0.3
984
Normal
-0.3
394
Normal
-0.3
232
Normal
-0.3
421
Tumor
-0.3
721
Tumor
-0.3
1041
Tumor
-0.3
563
Tumor
-0.3
662
Normal
-0.3
554
Normal
-0.3
618
Normal
-0.3
428
Normal
-0.3
664
Normal
-0.3
191
Tumor
-0.3
922
Normal
-0.3
132
Normal
-0.3
267
Tumor
-0.3
456
Normal
-0.3
648
Normal
-0.3
666
Normal
-0.3
138
Normal
-0.3
564
Normal
-0.4
468
Normal
-0.4
422
Normal
-0.4
124
Normal
-0.4
172
Normal
-0.4
395
Tumor
-0.4
478
Normal
-0.4
358
Normal
-0.4
671
Tumor
-0.4
572
Normal
-0.4
957
Tumor
-0.4
465
Tumor
-0.4
146
Normal
-0.4
355
Tumor
-0.4
525
Tumor
-0.4
672
Normal
-0.4
424
Normal
-0.4
148
Normal
-0.4
452
Normal
-0.4
647
Tumor
-0.4
444
Normal
-0.4
396
Normal
-0.4
813
Tumor
-0.4
823
Tumor
-0.4
432
Normal
-0.4
393
Tumor
-0.4
663
Tumor
-0.4
817
Tumor
-0.5
161
Tumor
-0.5
568
Normal
-0.5
332
Normal
-0.5
925
Tumor
-0.5
967
Tumor
-0.5
222
Normal
-0.5
423
Tumor
-0.5
383
Tumor
-0.5
366
Normal
-0.5
686
Normal
-0.5
636
Normal
-0.5
354
Normal
-0.5
196
Normal
-0.5
443
Tumor
-0.5
192
Normal
-0.5
214
Normal
-0.5
574
Normal
-0.5
344
Normal
-0.5
352
Normal
-0.5
298
Normal
-0.5
314
Normal
-0.5
413
Tumor
-0.5
342
Normal
-0.5
426
Normal
-0.5
312
Normal
-0.5
376
Normal
-0.5
392
Normal
-0.6
431
Tumor
-0.6
341
Tumor
-0.6
446
Normal
-0.6
473
Tumor
-0.6
367
Tumor
-0.6
463
Tumor
-0.7
277
Tumor
-0.7
278
Normal
-0.7
343
Tumor
-0.7
384
Normal
-0.7
368
Normal
-0.7
112
Tumor
-0.7
487
Tumor
-0.8
357
Tumor
-0.8
695
Tumor
-0.9
331
Tumor
-0.9
571
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
