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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP4F3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
295.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
200.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
170.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
166.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
140.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
139.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
135.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
135.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
132.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
128.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
125.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
125.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
122.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
120.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
118.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
116.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
116.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
113.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
112.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
109.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
109.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
108.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
107.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
104.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
102.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
99.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
98.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
96.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
96.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
96.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
95.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
93.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
91.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
89.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
89.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
87.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
85.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
84.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
84.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
83.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
83.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
83.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
82.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
82.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
81.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
79.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
79.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
78.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
77.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
77.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
75.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
75.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
75.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
73.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
73.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
71.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
70.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
70.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
70.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
69.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
68.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
68.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
67.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
67.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
67.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
67.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
67.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
66.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
66.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
65.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
65.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
64.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
64.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
63.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
63.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
63.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
62.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
62.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
62.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
62.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
61.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
61.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
61.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
60.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
60.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
60.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
60.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
60.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
59.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
59.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
59.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
59.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
58.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
57.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
57.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
56.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
56.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
55.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
54.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
54.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
53.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
52.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
52.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
52.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
51.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
51.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
50.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
50.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
50.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
49.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
48.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
48.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
48.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
47.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
47.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
45.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
45.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
44.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
44.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
44.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
44.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
44.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
43.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
43.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
42.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
41.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
41.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
39.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
39.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
38.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
38.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
36.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
36.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
35.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
35.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
35.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
34.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
34.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
34.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
34.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
33.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
33.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
33.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
33.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
32.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
32.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
31.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
30.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
30.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
28.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
28.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
26.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
25.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
24.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
23.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
23.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
21.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
20.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
20.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
19.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
19.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
18.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
17.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
16.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CYP4F3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
58.2
Number of samples
231
Samples
Sample
Description
TPM
DO45281
0 years, male, NA, stage:4, alive, 750 days
805.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
338.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
215.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
201.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
199.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
198.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
187.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
185.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
179.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
177.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
175.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
169.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
165.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
161.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
160.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
158.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
154.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
143.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
131.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
124.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
117.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
116.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
115.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
112.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
110.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
109.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
107.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
106.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
106.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
105.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
105.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
105.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
101.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
99.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
98.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
98.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
98.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
96.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
94.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
91.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
90.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
90.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
90.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
85.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
85.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
84.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
83.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
83.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
82.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
82.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
81.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
81.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
80.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
80.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
78.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
77.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
76.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
75.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
74.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
74.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
74.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
73.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
73.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
72.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
71.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
69.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
69.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
68.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
68.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
68.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
68.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
67.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
66.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
62.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
62.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
61.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
60.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
60.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
59.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
59.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
58.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
57.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
57.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
56.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
56.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
55.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
54.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
54.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
53.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
53.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
51.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
51.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
50.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
50.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
50.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
49.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
47.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
47.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
46.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
46.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
45.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
44.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
43.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
43.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
42.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
42.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
40.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
40.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
39.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
39.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
37.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
33.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
32.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
32.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
31.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
28.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
25.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
24.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
23.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
19.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
18.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
14.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
648
Normal
1.3
342
Normal
1.3
222
Normal
1.2
314
Normal
1.1
132
Normal
1.1
426
Normal
1.0
466
Normal
0.9
356
Normal
0.9
412
Normal
0.9
636
Normal
0.9
744
Normal
0.9
388
Normal
0.9
432
Normal
0.9
981
Tumor
0.9
114
Normal
0.9
422
Normal
0.9
878
Normal
0.9
376
Normal
0.9
666
Normal
0.8
148
Normal
0.8
912
Normal
0.8
1022
Normal
0.8
162
Normal
0.8
298
Normal
0.8
746
Normal
0.8
354
Normal
0.8
484
Normal
0.8
358
Normal
0.8
424
Normal
0.8
462
Normal
0.8
278
Normal
0.8
954
Normal
0.8
874
Normal
0.8
186
Normal
0.8
698
Normal
0.7
662
Normal
0.7
564
Normal
0.7
353
Tumor
0.7
882
Normal
0.7
1014
Normal
0.7
618
Normal
0.7
944
Normal
0.7
818
Normal
0.7
914
Normal
0.7
428
Normal
0.7
436
Normal
0.7
332
Normal
0.7
866
Normal
0.7
785
Tumor
0.7
546
Normal
0.7
723
Tumor
0.7
714
Normal
0.7
911
Tumor
0.7
628
Normal
0.7
312
Normal
0.7
964
Normal
0.7
232
Normal
0.6
574
Normal
0.6
482
Normal
0.6
196
Normal
0.6
627
Tumor
0.6
284
Normal
0.6
262
Normal
0.6
452
Normal
0.6
464
Normal
0.6
414
Normal
0.6
128
Normal
0.6
514
Normal
0.6
982
Normal
0.6
864
Normal
0.6
142
Normal
0.6
468
Normal
0.6
394
Normal
0.6
786
Normal
0.6
172
Normal
0.6
958
Normal
0.6
534
Normal
0.6
392
Normal
0.5
968
Normal
0.5
528
Normal
0.5
258
Normal
0.5
362
Normal
0.5
756
Normal
0.5
352
Normal
0.5
366
Normal
0.5
572
Normal
0.5
824
Normal
0.5
124
Normal
0.5
728
Normal
0.5
858
Normal
0.5
922
Normal
0.5
722
Normal
0.5
328
Normal
0.5
431
Tumor
0.5
873
Tumor
0.5
518
Normal
0.5
976
Normal
0.5
664
Normal
0.5
474
Normal
0.5
526
Normal
0.5
214
Normal
0.4
146
Normal
0.4
365
Tumor
0.4
778
Normal
0.4
686
Normal
0.4
445
Tumor
0.4
616
Normal
0.4
423
Tumor
0.4
558
Normal
0.4
481
Tumor
0.4
111
Normal
0.4
1046
Normal
0.4
396
Normal
0.4
1026
Normal
0.4
857
Tumor
0.4
188
Normal
0.4
456
Normal
0.4
212
Normal
0.4
952
Normal
0.4
416
Normal
0.4
126
Normal
0.4
446
Normal
0.4
938
Normal
0.4
956
Normal
0.3
816
Normal
0.3
1016
Normal
0.3
448
Normal
0.3
494
Normal
0.3
228
Normal
0.3
1043
Tumor
0.3
738
Normal
0.3
918
Normal
0.3
984
Normal
0.3
513
Tumor
0.3
915
Tumor
0.3
268
Normal
0.3
261
Tumor
0.3
1032
Normal
0.3
435
Tumor
0.3
267
Tumor
0.3
868
Normal
0.3
716
Normal
0.3
272
Normal
0.3
978
Normal
0.3
1028
Normal
0.3
488
Normal
0.3
1044
Normal
0.3
568
Normal
0.3
955
Tumor
0.2
1042
Normal
0.2
862
Normal
0.2
136
Normal
0.2
913
Tumor
0.2
916
Normal
0.2
696
Normal
0.2
516
Normal
0.2
863
Tumor
0.2
218
Normal
0.2
554
Normal
0.2
224
Normal
0.2
465
Tumor
0.2
615
Tumor
0.2
571
Tumor
0.2
361
Tumor
0.2
386
Normal
0.2
286
Normal
0.2
434
Normal
0.2
368
Normal
0.2
966
Normal
0.1
852
Normal
0.1
277
Tumor
0.1
1041
Tumor
0.1
926
Normal
0.1
924
Normal
0.1
867
Tumor
0.1
498
Normal
0.1
344
Normal
0.1
147
Tumor
0.1
138
Normal
0.1
384
Normal
0.1
112
Tumor
0.1
741
Tumor
0.1
472
Normal
0.1
364
Normal
0.0
444
Normal
0.0
642
Normal
0.0
478
Normal
0.0
145
Tumor
0.0
524
Normal
0.0
755
Tumor
-0.1
742
Normal
-0.1
492
Normal
-0.1
461
Tumor
-0.1
192
Normal
-0.1
515
Tumor
-0.1
357
Tumor
-0.1
113
Tumor
-0.1
327
Tumor
-0.1
221
Tumor
-0.1
884
Normal
-0.1
127
Tumor
-0.2
411
Tumor
-0.2
477
Tumor
-0.2
137
Tumor
-0.2
641
Tumor
-0.2
538
Normal
-0.3
141
Tumor
-0.3
1045
Tumor
-0.3
433
Tumor
-0.3
415
Tumor
-0.3
685
Tumor
-0.3
672
Normal
-0.3
721
Tumor
-0.3
187
Tumor
-0.3
967
Tumor
-0.3
195
Tumor
-0.3
647
Tumor
-0.3
161
Tumor
-0.4
977
Tumor
-0.4
341
Tumor
-0.4
713
Tumor
-0.4
617
Tumor
-0.4
881
Tumor
-0.4
861
Tumor
-0.4
777
Tumor
-0.4
217
Tumor
-0.4
533
Tumor
-0.4
191
Tumor
-0.5
421
Tumor
-0.5
745
Tumor
-0.5
185
Tumor
-0.5
523
Tumor
-0.5
665
Tumor
-0.5
715
Tumor
-0.5
1027
Tumor
-0.5
563
Tumor
-0.5
963
Tumor
-0.5
727
Tumor
-0.5
536
Normal
-0.5
921
Tumor
-0.5
463
Tumor
-0.5
455
Tumor
-0.6
271
Tumor
-0.6
443
Tumor
-0.6
737
Tumor
-0.6
483
Tumor
-0.6
473
Tumor
-0.7
231
Tumor
-0.7
557
Tumor
-0.7
953
Tumor
-0.7
527
Tumor
-0.7
1031
Tumor
-0.7
223
Tumor
-0.7
553
Tumor
-0.7
817
Tumor
-0.7
171
Tumor
-0.7
123
Tumor
-0.7
943
Tumor
-0.7
393
Tumor
-0.8
1025
Tumor
-0.8
525
Tumor
-0.8
1015
Tumor
-0.8
883
Tumor
-0.8
814
Normal
-0.8
447
Tumor
-0.9
695
Tumor
-0.9
635
Tumor
-0.9
975
Tumor
-0.9
1021
Tumor
-0.9
471
Tumor
-0.9
297
Tumor
-0.9
467
Tumor
-1.0
331
Tumor
-1.0
355
Tumor
-1.0
363
Tumor
-1.0
413
Tumor
-1.0
937
Tumor
-1.0
823
Tumor
-1.0
451
Tumor
-1.0
383
Tumor
-1.0
257
Tumor
-1.0
1013
Tumor
-1.0
567
Tumor
-1.0
227
Tumor
-1.0
427
Tumor
-1.1
877
Tumor
-1.1
923
Tumor
-1.1
135
Tumor
-1.1
951
Tumor
-1.1
851
Tumor
-1.1
813
Tumor
-1.1
697
Tumor
-1.1
917
Tumor
-1.1
493
Tumor
-1.1
125
Tumor
-1.1
491
Tumor
-1.1
663
Tumor
-1.2
343
Tumor
-1.2
375
Tumor
-1.2
213
Tumor
-1.2
387
Tumor
-1.3
865
Tumor
-1.3
313
Tumor
-1.3
351
Tumor
-1.3
573
Tumor
-1.4
311
Tumor
-1.4
391
Tumor
-1.4
983
Tumor
-1.4
285
Tumor
-1.5
671
Tumor
-1.5
395
Tumor
-1.5
367
Tumor
-1.6
925
Tumor
-1.6
425
Tumor
-1.6
487
Tumor
-1.6
517
Tumor
-1.7
661
Tumor
-1.7
957
Tumor
-1.7
815
Tumor
-1.7
283
Tumor
-1.7
545
Tumor
-1.8
497
Tumor
-1.8
131
Tumor
-1.8
537
Tumor
-1.8
724
Normal
-1.9
965
Tumor
-2.0
211
Tumor
-2.0
385
Tumor
-2.1
743
Tumor
-2.3
535
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.