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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM222 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
75.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
73.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
69.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
64.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
57.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
55.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
46.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
46.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
45.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
43.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
42.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
42.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
41.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
41.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
40.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
39.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
37.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
37.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
37.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
36.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
35.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
35.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
34.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
34.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
34.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
33.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
33.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
33.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
33.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
32.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
32.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
31.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
31.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
31.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
30.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
30.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
30.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
30.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
30.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
30.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
30.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
29.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
29.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
28.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
28.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
28.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
28.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
27.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
27.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
27.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
27.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
26.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
26.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
26.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
25.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
25.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
24.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
24.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
24.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
23.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
23.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
23.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
23.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
22.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
22.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
22.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
22.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
22.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
21.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
21.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
20.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
20.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
20.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
19.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
18.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM222 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.7
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
102.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
63.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
63.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
47.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
43.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
41.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
41.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
27.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
26.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
25.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
22.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
21.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
21.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
20.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
20.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
17.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
16.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
16.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.7
1032
Normal
0.7
554
Normal
0.7
342
Normal
0.7
435
Tumor
0.7
1013
Tumor
0.7
981
Tumor
0.7
741
Tumor
0.6
857
Tumor
0.6
534
Normal
0.6
697
Tumor
0.6
527
Tumor
0.6
1041
Tumor
0.6
481
Tumor
0.6
863
Tumor
0.5
1022
Normal
0.5
861
Tumor
0.5
958
Normal
0.5
938
Normal
0.5
257
Tumor
0.5
648
Normal
0.5
698
Normal
0.5
727
Tumor
0.5
466
Normal
0.4
968
Normal
0.4
538
Normal
0.4
1014
Normal
0.4
922
Normal
0.4
484
Normal
0.4
1046
Normal
0.4
1028
Normal
0.4
445
Tumor
0.4
536
Normal
0.4
944
Normal
0.4
546
Normal
0.4
125
Tumor
0.4
954
Normal
0.4
868
Normal
0.4
261
Tumor
0.4
926
Normal
0.4
212
Normal
0.4
488
Normal
0.4
357
Tumor
0.4
862
Normal
0.4
696
Normal
0.3
786
Normal
0.3
918
Normal
0.3
426
Normal
0.3
494
Normal
0.3
966
Normal
0.3
984
Normal
0.3
723
Tumor
0.3
1042
Normal
0.3
436
Normal
0.3
714
Normal
0.3
142
Normal
0.3
1044
Normal
0.3
358
Normal
0.3
785
Tumor
0.3
412
Normal
0.3
964
Normal
0.3
663
Tumor
0.3
864
Normal
0.3
746
Normal
0.3
196
Normal
0.3
128
Normal
0.3
222
Normal
0.3
148
Normal
0.3
132
Normal
0.3
911
Tumor
0.3
915
Tumor
0.3
878
Normal
0.3
976
Normal
0.3
952
Normal
0.3
722
Normal
0.3
172
Normal
0.3
431
Tumor
0.3
756
Normal
0.3
228
Normal
0.3
978
Normal
0.3
284
Normal
0.3
514
Normal
0.3
414
Normal
0.3
866
Normal
0.2
111
Normal
0.2
452
Normal
0.2
867
Tumor
0.2
112
Tumor
0.2
955
Tumor
0.2
1045
Tumor
0.2
298
Normal
0.2
924
Normal
0.2
232
Normal
0.2
465
Tumor
0.2
422
Normal
0.2
272
Normal
0.2
618
Normal
0.2
916
Normal
0.2
616
Normal
0.2
286
Normal
0.2
224
Normal
0.2
526
Normal
0.2
354
Normal
0.2
518
Normal
0.2
1026
Normal
0.2
376
Normal
0.2
963
Tumor
0.2
424
Normal
0.2
713
Tumor
0.2
126
Normal
0.2
953
Tumor
0.2
745
Tumor
0.2
925
Tumor
0.2
818
Normal
0.2
858
Normal
0.2
912
Normal
0.2
468
Normal
0.2
695
Tumor
0.2
344
Normal
0.1
956
Normal
0.1
258
Normal
0.1
356
Normal
0.1
482
Normal
0.1
513
Tumor
0.1
416
Normal
0.1
755
Tumor
0.1
162
Normal
0.1
171
Tumor
0.1
124
Normal
0.1
446
Normal
0.1
313
Tumor
0.1
884
Normal
0.1
533
Tumor
0.1
448
Normal
0.1
423
Tumor
0.1
824
Normal
0.1
492
Normal
0.1
267
Tumor
0.1
816
Normal
0.1
462
Normal
0.1
498
Normal
0.1
343
Tumor
0.1
472
Normal
0.1
558
Normal
0.1
392
Normal
0.1
515
Tumor
0.1
1016
Normal
0.1
516
Normal
0.1
186
Normal
0.1
138
Normal
0.1
882
Normal
0.1
364
Normal
0.1
114
Normal
0.1
328
Normal
0.1
666
Normal
0.1
852
Normal
0.1
615
Tumor
0.1
686
Normal
0.1
742
Normal
0.1
716
Normal
0.1
636
Normal
0.1
428
Normal
0.1
262
Normal
0.1
813
Tumor
0.1
564
Normal
0.1
672
Normal
0.1
777
Tumor
0.1
365
Tumor
0.1
218
Normal
0.1
352
Normal
0.1
341
Tumor
0.1
137
Tumor
0.1
433
Tumor
0.1
415
Tumor
0.1
528
Normal
0.0
214
Normal
0.0
977
Tumor
0.0
728
Normal
0.0
434
Normal
0.0
642
Normal
0.0
738
Normal
0.0
923
Tumor
0.0
278
Normal
0.0
478
Normal
0.0
136
Normal
0.0
557
Tumor
0.0
524
Normal
0.0
662
Normal
0.0
487
Tumor
0.0
314
Normal
0.0
474
Normal
0.0
778
Normal
0.0
355
Tumor
0.0
388
Normal
0.0
497
Tumor
0.0
384
Normal
0.0
823
Tumor
0.0
362
Normal
0.0
444
Normal
0.0
982
Normal
0.0
563
Tumor
0.0
268
Normal
0.0
628
Normal
0.0
664
Normal
0.0
368
Normal
0.0
617
Tumor
0.0
491
Tumor
0.0
396
Normal
0.0
874
Normal
0.0
213
Tumor
0.0
456
Normal
0.0
721
Tumor
0.0
432
Normal
-0.1
943
Tumor
-0.1
873
Tumor
-0.1
535
Tumor
-0.1
387
Tumor
-0.1
464
Normal
-0.1
568
Normal
-0.1
572
Normal
-0.1
635
Tumor
-0.1
627
Tumor
-0.1
394
Normal
-0.1
188
Normal
-0.1
353
Tumor
-0.1
146
Normal
-0.1
192
Normal
-0.1
914
Normal
-0.1
567
Tumor
-0.1
366
Normal
-0.1
1043
Tumor
-0.1
1021
Tumor
-0.1
231
Tumor
-0.1
217
Tumor
-0.1
283
Tumor
-0.2
271
Tumor
-0.2
1015
Tumor
-0.2
145
Tumor
-0.2
312
Normal
-0.2
135
Tumor
-0.2
574
Normal
-0.2
814
Normal
-0.2
737
Tumor
-0.2
467
Tumor
-0.2
386
Normal
-0.2
223
Tumor
-0.2
113
Tumor
-0.2
185
Tumor
-0.2
127
Tumor
-0.2
461
Tumor
-0.2
571
Tumor
-0.2
523
Tumor
-0.2
965
Tumor
-0.2
877
Tumor
-0.2
383
Tumor
-0.2
447
Tumor
-0.2
413
Tumor
-0.2
815
Tumor
-0.2
493
Tumor
-0.3
715
Tumor
-0.3
913
Tumor
-0.3
917
Tumor
-0.3
361
Tumor
-0.3
161
Tumor
-0.3
573
Tumor
-0.3
421
Tumor
-0.3
641
Tumor
-0.3
427
Tumor
-0.3
227
Tumor
-0.3
937
Tumor
-0.3
195
Tumor
-0.3
455
Tumor
-0.3
685
Tumor
-0.3
865
Tumor
-0.3
332
Normal
-0.3
983
Tumor
-0.3
477
Tumor
-0.3
211
Tumor
-0.3
883
Tumor
-0.3
647
Tumor
-0.4
473
Tumor
-0.4
285
Tumor
-0.4
141
Tumor
-0.4
951
Tumor
-0.4
411
Tumor
-0.4
147
Tumor
-0.4
553
Tumor
-0.4
463
Tumor
-0.4
851
Tumor
-0.4
975
Tumor
-0.4
724
Normal
-0.4
327
Tumor
-0.4
221
Tumor
-0.4
881
Tumor
-0.4
451
Tumor
-0.4
471
Tumor
-0.4
921
Tumor
-0.4
545
Tumor
-0.4
967
Tumor
-0.5
395
Tumor
-0.5
391
Tumor
-0.5
367
Tumor
-0.5
1031
Tumor
-0.5
483
Tumor
-0.5
1025
Tumor
-0.5
331
Tumor
-0.5
187
Tumor
-0.5
525
Tumor
-0.5
191
Tumor
-0.5
817
Tumor
-0.5
351
Tumor
-0.6
443
Tumor
-0.6
375
Tumor
-0.6
661
Tumor
-0.6
665
Tumor
-0.6
123
Tumor
-0.6
671
Tumor
-0.6
393
Tumor
-0.6
131
Tumor
-0.6
537
Tumor
-0.6
297
Tumor
-0.7
363
Tumor
-0.7
385
Tumor
-0.7
425
Tumor
-0.7
957
Tumor
-0.7
311
Tumor
-0.8
517
Tumor
-0.8
743
Tumor
-1.0
277
Tumor
-1.1
744
Normal
-2.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
