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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.8
Sample id
Sample description
nTPM
Amygdala nTPM: 46.1
1987
Female, age 91, left hemisphere
71.5
2517
Female, age 94, left hemisphere
57.2
2814
Male, age 76, right hemisphere
50.0
2514
Male, age 75, right hemisphere
33.4
2695
Female, age 67, right hemisphere
18.6
Basal amygdala nTPM: 74.0
2243
Female, age 91, right hemisphere
131.7
2110
Male, age 80, left hemisphere
122.2
2685
Female, age 94, left hemisphere
65.8
1955
Male, age 76, both hemispheres
64.3
2827
Female, age 67, right hemisphere
33.2
2609
Male, age 75, right hemisphere
26.6
Central amygdala nTPM: 48.0
2239
Male, age 80, left hemisphere
96.9
2701
Female, age 91, right hemisphere
49.2
1905
Male, age 76, both hemispheres
39.9
2515
Male, age 75, right hemisphere
29.3
2826
Female, age 94, left hemisphere
24.7
Corticomedial amygdala nTPM: 91.8
2242
Female, age 91, right hemisphere
151.6
2829
Male, age 80, left hemisphere
120.1
2240
Male, age 76, both hemispheres
93.5
2429
Female, age 94, left hemisphere
89.6
2535
Female, age 67, right hemisphere
62.2
2428
Male, age 75, right hemisphere
33.5
Lateral amygdala nTPM: 42.2
1883
Male, age 76, both hemispheres
66.5
2255
Female, age 91, right hemisphere
51.6
2534
Female, age 94, left hemisphere
48.7
2256
Male, age 80, left hemisphere
37.1
2830
Female, age 67, right hemisphere
26.4
2516
Male, age 75, right hemisphere
22.9
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 74.4
Samples: 152
Max nTPM: 224.7
Min nTPM: 6.3
Std nTPM: 44.5
Median nTPM: 65.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
224.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
206.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
197.7
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
191.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
182.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
179.3
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
177.1
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
177.0
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
174.2
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
171.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
165.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
165.7
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
154.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
152.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
147.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
139.8
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
134.0
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
125.1
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
119.0
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
115.5
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
113.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
113.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
111.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
111.1
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
110.3
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
108.0
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
108.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
107.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
106.3
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
100.5
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
100.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
100.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
99.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
99.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
97.7
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
97.1
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
96.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
95.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
93.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
93.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
92.7
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
92.4
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
91.4
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
88.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
88.0
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
87.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
86.5
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
86.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
85.4
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
83.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
82.1
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
80.7
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
80.0
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
78.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
78.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
77.8
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
75.9
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
75.8
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
75.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
74.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
74.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
74.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
73.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
72.9
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
72.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
72.2
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
71.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
71.7
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
68.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
67.9
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
67.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
67.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
67.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
66.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
66.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
65.4
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
65.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
64.9
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
64.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
64.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
64.3
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
64.2
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
62.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
62.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
62.3
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
60.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
59.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
59.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
59.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
58.8
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
58.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
57.9
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
57.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
57.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
56.6
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
55.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
53.6
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
53.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
52.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
51.3
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
50.4
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
49.7
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
49.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
48.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
48.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
48.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
47.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
47.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
47.0
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
46.9
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
46.6
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
46.1
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
44.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
44.3
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
43.9
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
42.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
41.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
41.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
41.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
41.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
40.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
40.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
40.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
38.3
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
37.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
36.6
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
34.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
33.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
31.8
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
30.7
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
30.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
28.7
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
28.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
28.1
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
27.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
26.5
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
26.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
25.8
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
25.6
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
24.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
24.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
22.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
21.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
20.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
19.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
18.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
13.9
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
11.0
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
9.8
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
9.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
6.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
6.3
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
149.3
Mouse sample
Sample description
nTPM
Amygdala nTPM: 149.3
Samples: 4
Max nTPM: 170.2
Min nTPM: 136.2
Sample A
Male
170.2
Sample B
Male
146.6
Sample C
Female
136.2
Sample D
Female
144.1
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
