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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1CC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
113.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
107.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
104.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
99.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
94.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
92.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
85.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
84.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
78.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
78.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
77.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
75.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
69.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
69.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
69.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
68.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
68.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
66.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
66.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
66.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
62.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
62.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
61.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
61.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
60.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
60.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
60.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
59.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
59.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
59.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
58.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
55.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
55.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
55.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
55.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
55.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
54.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
54.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
54.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
54.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
54.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
54.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
53.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
52.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
51.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
48.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
48.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
48.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
48.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
47.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
47.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
46.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
46.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
46.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
45.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
44.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
44.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
43.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
43.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
43.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
42.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
42.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
42.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
41.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
41.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
41.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
41.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
40.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
39.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
39.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
39.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
39.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
39.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
39.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
38.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
38.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
37.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
37.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
37.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
35.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
35.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
35.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
35.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
34.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
34.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
33.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
33.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
32.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
32.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
32.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
32.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
32.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
32.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
31.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
31.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
31.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
30.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
30.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
29.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
29.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
29.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
29.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
29.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
28.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
28.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
27.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
27.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
27.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
26.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
26.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
26.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
26.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
26.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
26.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
26.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
25.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
25.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
25.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
24.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
24.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
23.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
23.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
23.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
23.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
22.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
22.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
21.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
21.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
21.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
21.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
21.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
21.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
20.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
20.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
20.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
18.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
14.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1CC is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.9
Number of samples
231
Samples
Sample
Description
TPM
DO50832
0 years, male, NA, stage:3, alive, 90 days
170.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
136.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
123.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
115.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
107.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
99.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
92.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
90.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
89.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
89.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
89.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
79.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
78.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
77.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
75.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
74.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
74.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
73.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
73.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
72.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
72.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
70.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
69.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
68.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
67.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
67.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
65.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
65.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
62.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
62.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
62.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
61.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
60.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
60.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
60.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
60.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
59.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
59.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
58.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
58.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
58.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
56.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
56.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
56.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
55.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
54.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
54.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
53.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
52.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
52.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
52.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
52.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
52.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
52.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
51.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
51.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
51.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
51.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
51.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
50.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
50.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
50.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
50.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
49.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
49.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
48.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
48.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
48.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
48.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
48.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
48.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
47.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
47.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
47.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
46.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
45.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
45.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
45.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
44.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
44.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
42.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
42.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
42.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
41.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
41.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
41.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
40.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
40.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
40.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
39.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
39.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
38.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
38.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
37.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
37.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
37.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
35.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
35.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
35.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
35.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
34.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
34.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
34.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
32.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
32.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
31.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
30.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
30.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
30.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
27.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
26.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
25.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
23.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
22.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
20.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
20.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
19.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
15.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.6
977
Tumor
0.4
411
Tumor
0.3
283
Tumor
0.3
455
Tumor
0.3
271
Tumor
0.3
211
Tumor
0.3
983
Tumor
0.3
425
Tumor
0.3
367
Tumor
0.3
523
Tumor
0.3
1027
Tumor
0.3
123
Tumor
0.2
277
Tumor
0.2
743
Tumor
0.2
141
Tumor
0.2
1013
Tumor
0.2
527
Tumor
0.2
975
Tumor
0.2
473
Tumor
0.2
385
Tumor
0.2
737
Tumor
0.2
661
Tumor
0.2
877
Tumor
0.2
313
Tumor
0.2
463
Tumor
0.2
1021
Tumor
0.2
635
Tumor
0.2
813
Tumor
0.2
491
Tumor
0.2
497
Tumor
0.2
951
Tumor
0.2
351
Tumor
0.2
125
Tumor
0.2
957
Tumor
0.2
357
Tumor
0.1
147
Tumor
0.1
285
Tumor
0.1
493
Tumor
0.1
461
Tumor
0.1
515
Tumor
0.1
715
Tumor
0.1
967
Tumor
0.1
343
Tumor
0.1
261
Tumor
0.1
865
Tumor
0.1
395
Tumor
0.1
355
Tumor
0.1
185
Tumor
0.1
1031
Tumor
0.1
965
Tumor
0.1
483
Tumor
0.1
817
Tumor
0.1
823
Tumor
0.1
745
Tumor
0.1
375
Tumor
0.1
257
Tumor
0.1
881
Tumor
0.1
135
Tumor
0.1
137
Tumor
0.1
124
Normal
0.1
1015
Tumor
0.1
465
Tumor
0.1
746
Normal
0.1
451
Tumor
0.1
538
Normal
0.1
213
Tumor
0.1
427
Tumor
0.1
171
Tumor
0.1
1043
Tumor
0.0
161
Tumor
0.0
227
Tumor
0.0
363
Tumor
0.0
393
Tumor
0.0
477
Tumor
0.0
861
Tumor
0.0
445
Tumor
0.0
431
Tumor
0.0
567
Tumor
0.0
443
Tumor
0.0
471
Tumor
0.0
553
Tumor
0.0
921
Tumor
0.0
223
Tumor
0.0
911
Tumor
0.0
341
Tumor
0.0
112
Tumor
0.0
685
Tumor
0.0
434
Normal
0.0
923
Tumor
0.0
915
Tumor
0.0
755
Tumor
0.0
433
Tumor
0.0
487
Tumor
0.0
297
Tumor
0.0
537
Tumor
0.0
557
Tumor
0.0
778
Normal
0.0
311
Tumor
0.0
917
Tumor
0.0
435
Tumor
0.0
815
Tumor
0.0
744
Normal
0.0
925
Tumor
0.0
814
Normal
0.0
883
Tumor
0.0
554
Normal
0.0
421
Tumor
0.0
344
Normal
0.0
423
Tumor
0.0
545
Tumor
0.0
533
Tumor
0.0
387
Tumor
0.0
695
Tumor
0.0
981
Tumor
0.0
952
Normal
0.0
452
Normal
-0.1
1025
Tumor
-0.1
128
Normal
-0.1
963
Tumor
-0.1
111
Normal
-0.1
937
Tumor
-0.1
114
Normal
-0.1
966
Normal
-0.1
231
Tumor
-0.1
777
Tumor
-0.1
331
Tumor
-0.1
867
Tumor
-0.1
142
Normal
-0.1
647
Tumor
-0.1
492
Normal
-0.1
943
Tumor
-0.1
878
Normal
-0.1
447
Tumor
-0.1
127
Tumor
-0.1
221
Tumor
-0.1
573
Tumor
-0.1
873
Tumor
-0.1
272
Normal
-0.1
525
Tumor
-0.1
113
Tumor
-0.1
535
Tumor
-0.1
785
Tumor
-0.1
874
Normal
-0.1
724
Normal
-0.1
697
Tumor
-0.1
267
Tumor
-0.1
913
Tumor
-0.1
391
Tumor
-0.1
518
Normal
-0.1
126
Normal
-0.2
413
Tumor
-0.2
816
Normal
-0.2
914
Normal
-0.2
467
Tumor
-0.2
698
Normal
-0.2
617
Tumor
-0.2
342
Normal
-0.2
412
Normal
-0.2
727
Tumor
-0.2
217
Tumor
-0.2
546
Normal
-0.2
955
Tumor
-0.2
186
Normal
-0.2
742
Normal
-0.2
187
Tumor
-0.2
1041
Tumor
-0.2
517
Tumor
-0.2
422
Normal
-0.2
536
Normal
-0.2
738
Normal
-0.2
1028
Normal
-0.2
741
Tumor
-0.2
298
Normal
-0.2
448
Normal
-0.2
188
Normal
-0.2
426
Normal
-0.2
851
Tumor
-0.2
1045
Tumor
-0.2
136
Normal
-0.2
713
Tumor
-0.2
436
Normal
-0.2
228
Normal
-0.2
356
Normal
-0.2
138
Normal
-0.2
956
Normal
-0.2
214
Normal
-0.2
456
Normal
-0.2
146
Normal
-0.2
218
Normal
-0.2
162
Normal
-0.2
953
Tumor
-0.2
386
Normal
-0.2
474
Normal
-0.2
671
Tumor
-0.2
327
Tumor
-0.2
172
Normal
-0.2
392
Normal
-0.3
728
Normal
-0.3
663
Tumor
-0.3
716
Normal
-0.3
938
Normal
-0.3
416
Normal
-0.3
268
Normal
-0.3
224
Normal
-0.3
286
Normal
-0.3
192
Normal
-0.3
353
Tumor
-0.3
262
Normal
-0.3
212
Normal
-0.3
148
Normal
-0.3
528
Normal
-0.3
968
Normal
-0.3
1016
Normal
-0.3
686
Normal
-0.3
428
Normal
-0.3
278
Normal
-0.3
132
Normal
-0.3
721
Tumor
-0.3
222
Normal
-0.3
862
Normal
-0.3
466
Normal
-0.3
364
Normal
-0.3
866
Normal
-0.3
415
Tumor
-0.3
462
Normal
-0.3
284
Normal
-0.3
464
Normal
-0.3
1014
Normal
-0.3
857
Tumor
-0.3
563
Tumor
-0.3
982
Normal
-0.3
662
Normal
-0.3
513
Tumor
-0.3
516
Normal
-0.3
534
Normal
-0.3
1026
Normal
-0.3
976
Normal
-0.3
858
Normal
-0.3
824
Normal
-0.3
696
Normal
-0.3
468
Normal
-0.3
358
Normal
-0.3
571
Tumor
-0.3
472
Normal
-0.3
478
Normal
-0.3
332
Normal
-0.3
984
Normal
-0.3
145
Tumor
-0.4
574
Normal
-0.4
365
Tumor
-0.4
944
Normal
-0.4
394
Normal
-0.4
196
Normal
-0.4
488
Normal
-0.4
852
Normal
-0.4
864
Normal
-0.4
786
Normal
-0.4
756
Normal
-0.4
1044
Normal
-0.4
964
Normal
-0.4
444
Normal
-0.4
714
Normal
-0.4
396
Normal
-0.4
924
Normal
-0.4
882
Normal
-0.4
484
Normal
-0.4
383
Tumor
-0.4
524
Normal
-0.4
362
Normal
-0.4
641
Tumor
-0.4
314
Normal
-0.4
664
Normal
-0.4
868
Normal
-0.4
195
Tumor
-0.4
863
Tumor
-0.4
482
Normal
-0.4
414
Normal
-0.4
424
Normal
-0.4
352
Normal
-0.4
388
Normal
-0.4
481
Tumor
-0.4
312
Normal
-0.4
328
Normal
-0.4
723
Tumor
-0.4
1022
Normal
-0.4
666
Normal
-0.4
494
Normal
-0.4
1046
Normal
-0.4
627
Tumor
-0.4
526
Normal
-0.4
232
Normal
-0.4
618
Normal
-0.4
498
Normal
-0.4
376
Normal
-0.5
568
Normal
-0.5
954
Normal
-0.5
258
Normal
-0.5
978
Normal
-0.5
191
Tumor
-0.5
354
Normal
-0.5
432
Normal
-0.5
366
Normal
-0.5
916
Normal
-0.5
648
Normal
-0.5
615
Tumor
-0.5
918
Normal
-0.5
446
Normal
-0.5
722
Normal
-0.5
958
Normal
-0.5
818
Normal
-0.5
361
Tumor
-0.5
922
Normal
-0.5
636
Normal
-0.5
564
Normal
-0.6
926
Normal
-0.6
665
Tumor
-0.6
884
Normal
-0.6
572
Normal
-0.6
1042
Normal
-0.6
1032
Normal
-0.6
912
Normal
-0.6
558
Normal
-0.6
514
Normal
-0.6
642
Normal
-0.7
672
Normal
-0.7
616
Normal
-0.7
384
Normal
-0.7
628
Normal
-0.8
368
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
