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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOR3A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
149.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
140.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
124.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
122.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
110.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
99.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
98.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
94.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
87.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
86.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
77.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
73.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
71.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
70.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
70.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
69.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
68.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
67.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
67.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
66.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
66.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
65.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
64.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
63.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
63.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
63.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
61.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
59.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
58.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
58.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
57.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
55.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
54.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
50.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
50.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
47.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
46.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
46.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
46.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
46.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
45.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
45.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
43.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
43.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
39.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
39.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
38.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
38.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
36.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
34.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
34.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
34.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
33.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
33.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
33.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
31.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
31.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
30.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
29.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
29.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
29.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
29.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
28.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
28.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
27.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
27.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
27.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
26.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
26.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
25.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
25.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
24.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
24.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
23.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
22.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
22.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
22.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
22.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
21.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
21.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
21.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
20.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
19.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
16.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
16.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
16.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
12.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
11.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TOR3A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.1
Number of samples
231
Samples
Sample
Description
TPM
DO23528
0 years, female, NA, stage:2, alive, 1020 days
153.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
102.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
98.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
93.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
92.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
83.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
82.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
80.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
75.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
74.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
70.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
67.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
65.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
64.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
63.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
61.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
60.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
60.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
60.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
56.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
54.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
54.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
53.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
52.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
51.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
50.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
48.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
46.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
45.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
44.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
42.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
41.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
40.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
39.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
39.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
38.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
38.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
36.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
34.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
32.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
31.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
31.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
31.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
31.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
29.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
28.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
28.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
27.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
26.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
25.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
19.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
18.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
16.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
15.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
2.2
917
Tumor
1.5
877
Tumor
1.5
921
Tumor
1.3
491
Tumor
1.3
343
Tumor
1.2
425
Tumor
1.1
863
Tumor
1.1
342
Normal
1.1
452
Normal
1.0
743
Tumor
0.9
341
Tumor
0.9
277
Tumor
0.9
354
Normal
0.9
777
Tumor
0.9
358
Normal
0.8
545
Tumor
0.8
925
Tumor
0.8
375
Tumor
0.8
823
Tumor
0.8
313
Tumor
0.8
297
Tumor
0.8
916
Normal
0.7
344
Normal
0.7
445
Tumor
0.7
352
Normal
0.7
1031
Tumor
0.7
147
Tumor
0.7
923
Tumor
0.7
975
Tumor
0.6
924
Normal
0.6
471
Tumor
0.6
721
Tumor
0.6
353
Tumor
0.6
817
Tumor
0.6
434
Normal
0.6
715
Tumor
0.6
435
Tumor
0.5
283
Tumor
0.5
724
Normal
0.5
647
Tumor
0.5
918
Normal
0.5
355
Tumor
0.5
571
Tumor
0.5
351
Tumor
0.5
392
Normal
0.5
427
Tumor
0.5
713
Tumor
0.5
213
Tumor
0.5
172
Normal
0.5
857
Tumor
0.4
463
Tumor
0.4
394
Normal
0.4
456
Normal
0.4
535
Tumor
0.4
162
Normal
0.4
446
Normal
0.4
436
Normal
0.4
131
Tumor
0.4
423
Tumor
0.4
388
Normal
0.4
396
Normal
0.4
661
Tumor
0.4
386
Normal
0.4
915
Tumor
0.4
217
Tumor
0.4
188
Normal
0.4
171
Tumor
0.4
148
Normal
0.4
433
Tumor
0.4
195
Tumor
0.4
385
Tumor
0.4
141
Tumor
0.4
393
Tumor
0.4
227
Tumor
0.4
426
Normal
0.4
395
Tumor
0.4
186
Normal
0.3
332
Normal
0.3
135
Tumor
0.3
443
Tumor
0.3
881
Tumor
0.3
461
Tumor
0.3
943
Tumor
0.3
414
Normal
0.3
391
Tumor
0.3
192
Normal
0.3
444
Normal
0.3
187
Tumor
0.3
641
Tumor
0.3
515
Tumor
0.3
523
Tumor
0.3
222
Normal
0.3
533
Tumor
0.3
553
Tumor
0.3
125
Tumor
0.3
1042
Normal
0.3
468
Normal
0.3
311
Tumor
0.3
432
Normal
0.3
137
Tumor
0.3
1043
Tumor
0.3
365
Tumor
0.3
1027
Tumor
0.3
424
Normal
0.2
257
Tumor
0.2
421
Tumor
0.2
815
Tumor
0.2
465
Tumor
0.2
451
Tumor
0.2
573
Tumor
0.2
464
Normal
0.2
218
Normal
0.2
232
Normal
0.2
473
Tumor
0.2
467
Tumor
0.2
262
Normal
0.2
132
Normal
0.2
196
Normal
0.2
221
Tumor
0.2
214
Normal
0.2
422
Normal
0.2
536
Normal
0.2
258
Normal
0.2
568
Normal
0.2
966
Normal
0.2
466
Normal
0.2
492
Normal
0.2
138
Normal
0.2
697
Tumor
0.2
744
Normal
0.2
814
Normal
0.2
976
Normal
0.2
574
Normal
0.2
298
Normal
0.2
161
Tumor
0.2
413
Tumor
0.2
278
Normal
0.2
191
Tumor
0.1
922
Normal
0.1
428
Normal
0.1
493
Tumor
0.1
957
Tumor
0.1
1025
Tumor
0.1
527
Tumor
0.1
883
Tumor
0.1
145
Tumor
0.1
447
Tumor
0.1
224
Normal
0.1
312
Normal
0.1
272
Normal
0.1
268
Normal
0.1
387
Tumor
0.1
913
Tumor
0.1
331
Tumor
0.1
564
Normal
0.1
538
Normal
0.1
127
Tumor
0.1
384
Normal
0.1
851
Tumor
0.1
1028
Normal
0.1
1021
Tumor
0.1
517
Tumor
0.1
212
Normal
0.1
852
Normal
0.1
1026
Normal
0.1
136
Normal
0.0
146
Normal
0.0
483
Tumor
0.0
671
Tumor
0.0
223
Tumor
0.0
963
Tumor
0.0
267
Tumor
0.0
1045
Tumor
0.0
865
Tumor
0.0
685
Tumor
0.0
185
Tumor
0.0
478
Normal
0.0
1044
Normal
0.0
954
Normal
0.0
952
Normal
0.0
722
Normal
0.0
554
Normal
0.0
123
Tumor
0.0
357
Tumor
0.0
716
Normal
0.0
383
Tumor
0.0
964
Normal
0.0
914
Normal
0.0
497
Tumor
0.0
818
Normal
0.0
363
Tumor
0.0
285
Tumor
-0.1
455
Tumor
-0.1
557
Tumor
-0.1
228
Normal
-0.1
124
Normal
-0.1
142
Normal
-0.1
415
Tumor
-0.1
498
Normal
-0.1
816
Normal
-0.1
567
Tumor
-0.1
126
Normal
-0.1
741
Tumor
-0.1
1032
Normal
-0.1
488
Normal
-0.1
956
Normal
-0.1
271
Tumor
-0.1
368
Normal
-0.1
824
Normal
-0.1
965
Tumor
-0.1
698
Normal
-0.1
666
Normal
-0.1
572
Normal
-0.1
231
Tumor
-0.1
813
Tumor
-0.1
926
Normal
-0.1
958
Normal
-0.1
884
Normal
-0.1
284
Normal
-0.1
558
Normal
-0.1
1041
Tumor
-0.1
114
Normal
-0.1
912
Normal
-0.2
695
Tumor
-0.2
672
Normal
-0.2
366
Normal
-0.2
738
Normal
-0.2
472
Normal
-0.2
362
Normal
-0.2
1022
Normal
-0.2
686
Normal
-0.2
728
Normal
-0.2
662
Normal
-0.2
462
Normal
-0.2
737
Tumor
-0.2
261
Tumor
-0.2
868
Normal
-0.2
563
Tumor
-0.2
431
Tumor
-0.2
411
Tumor
-0.2
755
Tumor
-0.2
714
Normal
-0.2
518
Normal
-0.2
494
Normal
-0.2
112
Tumor
-0.2
861
Tumor
-0.2
416
Normal
-0.2
858
Normal
-0.2
484
Normal
-0.2
696
Normal
-0.3
376
Normal
-0.3
742
Normal
-0.3
882
Normal
-0.3
778
Normal
-0.3
938
Normal
-0.3
514
Normal
-0.3
1046
Normal
-0.3
648
Normal
-0.3
361
Tumor
-0.3
663
Tumor
-0.3
111
Normal
-0.3
785
Tumor
-0.3
873
Tumor
-0.3
516
Normal
-0.3
534
Normal
-0.3
526
Normal
-0.3
524
Normal
-0.3
482
Normal
-0.3
286
Normal
-0.3
723
Tumor
-0.3
727
Tumor
-0.3
537
Tumor
-0.3
664
Normal
-0.3
944
Normal
-0.4
862
Normal
-0.4
967
Tumor
-0.4
356
Normal
-0.4
878
Normal
-0.4
113
Tumor
-0.4
955
Tumor
-0.4
474
Normal
-0.4
487
Tumor
-0.4
328
Normal
-0.4
128
Normal
-0.4
364
Normal
-0.4
874
Normal
-0.4
911
Tumor
-0.4
627
Tumor
-0.4
525
Tumor
-0.4
968
Normal
-0.5
745
Tumor
-0.5
412
Normal
-0.5
546
Normal
-0.5
528
Normal
-0.5
327
Tumor
-0.5
864
Normal
-0.5
367
Tumor
-0.5
866
Normal
-0.5
481
Tumor
-0.5
867
Tumor
-0.5
951
Tumor
-0.6
746
Normal
-0.6
665
Tumor
-0.6
635
Tumor
-0.6
477
Tumor
-0.6
628
Normal
-0.7
642
Normal
-0.7
448
Normal
-0.7
615
Tumor
-0.7
756
Normal
-0.7
786
Normal
-0.8
513
Tumor
-0.8
953
Tumor
-0.8
616
Normal
-0.8
636
Normal
-0.8
618
Normal
-0.9
617
Tumor
-0.9
937
Tumor
-1.9
314
Normal
-2.0
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
