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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC51B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
329.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
313.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
191.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
179.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
150.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
125.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
104.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
75.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
61.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
57.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
51.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
48.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
48.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
47.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
39.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
36.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
27.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
18.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
14.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
444
Normal
1.9
627
Tumor
1.9
268
Normal
1.9
142
Normal
1.8
445
Tumor
1.7
132
Normal
1.6
137
Tumor
1.6
567
Tumor
1.5
737
Tumor
1.5
434
Normal
1.5
136
Normal
1.5
138
Normal
1.5
267
Tumor
1.5
131
Tumor
1.4
224
Normal
1.3
135
Tumor
1.3
955
Tumor
1.2
145
Tumor
1.2
863
Tumor
1.1
615
Tumor
1.1
365
Tumor
1.0
413
Tumor
0.9
284
Normal
0.9
916
Normal
0.8
433
Tumor
0.8
533
Tumor
0.8
873
Tumor
0.8
416
Normal
0.7
432
Normal
0.7
228
Normal
0.7
785
Tumor
0.7
411
Tumor
0.7
384
Normal
0.6
954
Normal
0.6
272
Normal
0.6
362
Normal
0.6
271
Tumor
0.6
368
Normal
0.6
741
Tumor
0.6
212
Normal
0.6
286
Normal
0.6
141
Tumor
0.6
423
Tumor
0.6
285
Tumor
0.6
443
Tumor
0.6
564
Normal
0.5
223
Tumor
0.5
361
Tumor
0.5
262
Normal
0.5
366
Normal
0.5
435
Tumor
0.5
446
Normal
0.4
617
Tumor
0.4
431
Tumor
0.4
414
Normal
0.4
436
Normal
0.4
921
Tumor
0.4
616
Normal
0.4
628
Normal
0.3
745
Tumor
0.3
426
Normal
0.3
574
Normal
0.3
421
Tumor
0.2
383
Tumor
0.2
428
Normal
0.2
422
Normal
0.2
534
Normal
0.2
642
Normal
0.2
618
Normal
0.2
636
Normal
0.2
814
Normal
0.2
257
Tumor
0.2
756
Normal
0.2
227
Tumor
0.2
146
Normal
0.2
424
Normal
0.1
367
Tumor
0.1
956
Normal
0.1
755
Tumor
0.1
258
Normal
0.1
568
Normal
0.1
376
Normal
0.1
232
Normal
0.0
777
Tumor
0.0
778
Normal
0.0
563
Tumor
0.0
938
Normal
0.0
874
Normal
0.0
813
Tumor
0.0
427
Tumor
0.0
553
Tumor
-0.1
375
Tumor
-0.1
364
Normal
-0.1
786
Normal
-0.1
356
Normal
-0.1
727
Tumor
-0.1
412
Normal
-0.1
864
Normal
-0.1
363
Tumor
-0.1
546
Normal
-0.2
415
Tumor
-0.2
953
Tumor
-0.2
918
Normal
-0.2
944
Normal
-0.2
867
Tumor
-0.2
538
Normal
-0.2
558
Normal
-0.3
425
Tumor
-0.3
868
Normal
-0.3
328
Normal
-0.3
866
Normal
-0.3
528
Normal
-0.3
231
Tumor
-0.3
923
Tumor
-0.3
746
Normal
-0.3
327
Tumor
-0.4
572
Normal
-0.4
635
Tumor
-0.4
952
Normal
-0.4
641
Tumor
-0.4
527
Tumor
-0.5
261
Tumor
-0.5
728
Normal
-0.5
915
Tumor
-0.6
571
Tumor
-0.6
862
Normal
-0.6
283
Tumor
-0.6
943
Tumor
-0.6
554
Normal
-0.6
924
Normal
-0.6
937
Tumor
-0.6
355
Tumor
-0.7
537
Tumor
-0.7
744
Normal
-0.7
922
Normal
-0.8
573
Tumor
-0.8
742
Normal
-0.8
738
Normal
-0.8
211
Tumor
-0.8
926
Normal
-0.8
545
Tumor
-0.9
557
Tumor
-0.9
917
Tumor
-0.9
925
Tumor
-1.0
951
Tumor
-1.0
723
Tumor
-1.0
861
Tumor
-1.3
865
Tumor
-1.4
724
Normal
-1.5
743
Tumor
-1.9
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
114
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
858
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
