We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR1D is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
56.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
177.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
168.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
165.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
154.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
142.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
141.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
130.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
128.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
126.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
126.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
125.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
118.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
114.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
114.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
114.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
113.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
112.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
111.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
111.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
108.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
107.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
107.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
105.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
104.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
104.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
104.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
100.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
100.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
99.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
98.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
97.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
97.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
97.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
97.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
96.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
96.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
95.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
93.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
92.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
91.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
89.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
88.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
88.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
87.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
87.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
86.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
85.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
84.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
84.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
84.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
83.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
82.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
82.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
82.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
82.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
81.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
81.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
81.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
80.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
80.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
80.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
80.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
79.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
79.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
78.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
78.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
78.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
78.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
77.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
77.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
77.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
76.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
76.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
75.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
75.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
75.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
75.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
74.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
74.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
73.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
72.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
72.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
71.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
71.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
70.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
70.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
70.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
69.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
69.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
69.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
69.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
69.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
69.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
68.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
68.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
67.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
67.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
67.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
66.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
66.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
66.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
66.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
65.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
65.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
65.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
65.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
65.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
64.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
63.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
63.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
62.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
62.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
61.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
60.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
60.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
59.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
59.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
59.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
59.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
58.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
58.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
58.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
57.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
57.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
57.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
56.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
55.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
55.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
55.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
54.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
54.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
54.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
53.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
53.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
52.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
52.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
52.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
52.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
52.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
52.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
51.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
51.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
51.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
51.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
50.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
50.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
50.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
50.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
49.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
48.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
48.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
48.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
48.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
47.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
47.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
47.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
47.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
47.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
46.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
46.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
46.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
45.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
45.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
45.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
45.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
45.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
45.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
44.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
44.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
44.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
44.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
43.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
43.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
43.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
42.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
42.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
42.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
42.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
42.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
41.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
40.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
40.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
39.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
38.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
38.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
38.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
36.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
36.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
36.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
35.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
35.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
35.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
34.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
33.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
33.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
33.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
32.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
32.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
32.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
31.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
31.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
31.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
31.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
31.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
30.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
29.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
29.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
29.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
29.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
28.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
27.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
27.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
26.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
26.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
25.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
22.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
19.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
POLR1D is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.4
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
145.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
127.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
110.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
107.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
95.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
88.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
87.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
86.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
84.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
84.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
83.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
76.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
72.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
67.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
66.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
63.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
62.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
62.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
62.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
62.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
61.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
60.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
59.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
59.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
59.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
58.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
58.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
57.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
57.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
56.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
55.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
54.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
51.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
51.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
49.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
48.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
48.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
47.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
47.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
46.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
46.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
44.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
44.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
43.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
43.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
43.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
43.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
42.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
42.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
41.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
39.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
39.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
39.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
39.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
38.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
38.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
38.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
35.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
35.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
35.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
34.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
34.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
34.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
34.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
33.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
33.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
33.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
31.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
30.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
30.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
29.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
29.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
28.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
28.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
24.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
24.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
24.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
22.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
20.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
19.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
385
Tumor
0.8
351
Tumor
0.7
1013
Tumor
0.7
535
Tumor
0.7
815
Tumor
0.7
211
Tumor
0.7
923
Tumor
0.7
331
Tumor
0.6
261
Tumor
0.6
473
Tumor
0.6
983
Tumor
0.6
951
Tumor
0.6
915
Tumor
0.5
883
Tumor
0.5
877
Tumor
0.5
715
Tumor
0.5
685
Tumor
0.5
911
Tumor
0.5
1041
Tumor
0.5
743
Tumor
0.5
917
Tumor
0.5
395
Tumor
0.5
966
Normal
0.5
375
Tumor
0.5
227
Tumor
0.4
391
Tumor
0.4
957
Tumor
0.4
573
Tumor
0.4
557
Tumor
0.4
851
Tumor
0.4
283
Tumor
0.4
477
Tumor
0.4
467
Tumor
0.4
964
Normal
0.4
455
Tumor
0.3
357
Tumor
0.3
1015
Tumor
0.3
271
Tumor
0.3
413
Tumor
0.3
663
Tumor
0.3
977
Tumor
0.3
817
Tumor
0.3
343
Tumor
0.3
661
Tumor
0.3
963
Tumor
0.3
517
Tumor
0.3
451
Tumor
0.3
1021
Tumor
0.3
814
Normal
0.3
976
Normal
0.3
427
Tumor
0.3
865
Tumor
0.3
231
Tumor
0.2
545
Tumor
0.2
698
Normal
0.2
881
Tumor
0.2
943
Tumor
0.2
387
Tumor
0.2
567
Tumor
0.2
363
Tumor
0.2
635
Tumor
0.2
724
Normal
0.2
297
Tumor
0.2
423
Tumor
0.2
958
Normal
0.2
393
Tumor
0.2
123
Tumor
0.2
223
Tumor
0.2
313
Tumor
0.2
968
Normal
0.2
411
Tumor
0.2
497
Tumor
0.2
953
Tumor
0.2
925
Tumor
0.2
311
Tumor
0.2
492
Normal
0.2
257
Tumor
0.2
137
Tumor
0.2
447
Tumor
0.2
465
Tumor
0.1
285
Tumor
0.1
858
Normal
0.1
873
Tumor
0.1
213
Tumor
0.1
813
Tumor
0.1
967
Tumor
0.1
127
Tumor
0.1
755
Tumor
0.1
191
Tumor
0.1
785
Tumor
0.1
537
Tumor
0.1
383
Tumor
0.1
161
Tumor
0.1
756
Normal
0.1
861
Tumor
0.1
431
Tumor
0.1
526
Normal
0.1
136
Normal
0.1
665
Tumor
0.1
185
Tumor
0.1
171
Tumor
0.1
367
Tumor
0.1
1031
Tumor
0.1
468
Normal
0.1
672
Normal
0.1
456
Normal
0.1
913
Tumor
0.1
414
Normal
0.1
722
Normal
0.1
425
Tumor
0.1
975
Tumor
0.1
852
Normal
0.1
463
Tumor
0.1
956
Normal
0.1
187
Tumor
0.1
192
Normal
0.1
525
Tumor
0.1
452
Normal
0.1
671
Tumor
0.1
364
Normal
0.1
524
Normal
0.1
131
Tumor
0.0
938
Normal
0.0
944
Normal
0.0
867
Tumor
0.0
132
Normal
0.0
863
Tumor
0.0
937
Tumor
0.0
1025
Tumor
0.0
471
Tumor
0.0
818
Normal
0.0
217
Tumor
0.0
553
Tumor
0.0
267
Tumor
0.0
533
Tumor
0.0
926
Normal
0.0
786
Normal
0.0
874
Normal
0.0
528
Normal
0.0
714
Normal
0.0
882
Normal
0.0
721
Tumor
0.0
445
Tumor
0.0
527
Tumor
0.0
716
Normal
0.0
327
Tumor
0.0
224
Normal
0.0
466
Normal
0.0
384
Normal
0.0
954
Normal
0.0
955
Tumor
0.0
461
Tumor
0.0
356
Normal
0.0
912
Normal
0.0
864
Normal
0.0
472
Normal
0.0
268
Normal
0.0
686
Normal
0.0
695
Tumor
0.0
921
Tumor
0.0
415
Tumor
0.0
862
Normal
0.0
422
Normal
0.0
918
Normal
0.0
816
Normal
0.0
746
Normal
-0.1
258
Normal
-0.1
696
Normal
-0.1
491
Tumor
-0.1
916
Normal
-0.1
412
Normal
-0.1
426
Normal
-0.1
647
Tumor
-0.1
416
Normal
-0.1
778
Normal
-0.1
365
Tumor
-0.1
113
Tumor
-0.1
952
Normal
-0.1
478
Normal
-0.1
924
Normal
-0.1
823
Tumor
-0.1
571
Tumor
-0.1
741
Tumor
-0.1
742
Normal
-0.1
464
Normal
-0.1
617
Tumor
-0.1
433
Tumor
-0.1
538
Normal
-0.1
341
Tumor
-0.1
857
Tumor
-0.1
482
Normal
-0.1
481
Tumor
-0.1
128
Normal
-0.1
546
Normal
-0.1
878
Normal
-0.1
424
Normal
-0.1
641
Tumor
-0.1
284
Normal
-0.1
744
Normal
-0.1
435
Tumor
-0.1
212
Normal
-0.1
328
Normal
-0.1
138
Normal
-0.1
112
Tumor
-0.1
355
Tumor
-0.1
232
Normal
-0.1
353
Tumor
-0.1
516
Normal
-0.1
368
Normal
-0.1
1027
Tumor
-0.1
394
Normal
-0.1
361
Tumor
-0.1
262
Normal
-0.1
514
Normal
-0.1
866
Normal
-0.1
558
Normal
-0.1
824
Normal
-0.1
366
Normal
-0.2
523
Tumor
-0.2
221
Tumor
-0.2
884
Normal
-0.2
914
Normal
-0.2
777
Tumor
-0.2
554
Normal
-0.2
574
Normal
-0.2
627
Tumor
-0.2
188
Normal
-0.2
386
Normal
-0.2
195
Tumor
-0.2
428
Normal
-0.2
737
Tumor
-0.2
147
Tumor
-0.2
443
Tumor
-0.2
563
Tumor
-0.2
723
Tumor
-0.2
518
Normal
-0.2
222
Normal
-0.2
342
Normal
-0.2
1014
Normal
-0.2
1042
Normal
-0.2
922
Normal
-0.2
728
Normal
-0.2
662
Normal
-0.2
344
Normal
-0.2
286
Normal
-0.2
228
Normal
-0.2
745
Tumor
-0.2
666
Normal
-0.2
738
Normal
-0.2
362
Normal
-0.2
713
Tumor
-0.2
981
Tumor
-0.2
196
Normal
-0.2
618
Normal
-0.2
534
Normal
-0.2
615
Tumor
-0.2
388
Normal
-0.2
358
Normal
-0.2
272
Normal
-0.2
448
Normal
-0.2
392
Normal
-0.2
474
Normal
-0.2
1046
Normal
-0.2
462
Normal
-0.2
218
Normal
-0.2
493
Tumor
-0.2
483
Tumor
-0.2
648
Normal
-0.2
664
Normal
-0.2
978
Normal
-0.2
148
Normal
-0.2
536
Normal
-0.2
484
Normal
-0.2
1028
Normal
-0.2
868
Normal
-0.2
1032
Normal
-0.2
513
Tumor
-0.2
1016
Normal
-0.3
214
Normal
-0.3
727
Tumor
-0.3
1026
Normal
-0.3
984
Normal
-0.3
572
Normal
-0.3
354
Normal
-0.3
396
Normal
-0.3
515
Tumor
-0.3
172
Normal
-0.3
568
Normal
-0.3
352
Normal
-0.3
376
Normal
-0.3
298
Normal
-0.3
421
Tumor
-0.3
124
Normal
-0.3
982
Normal
-0.3
498
Normal
-0.3
1045
Tumor
-0.3
564
Normal
-0.3
312
Normal
-0.3
126
Normal
-0.3
434
Normal
-0.3
1044
Normal
-0.3
111
Normal
-0.3
488
Normal
-0.3
145
Tumor
-0.3
487
Tumor
-0.3
114
Normal
-0.3
125
Tumor
-0.3
135
Tumor
-0.4
697
Tumor
-0.4
628
Normal
-0.4
1043
Tumor
-0.4
142
Normal
-0.4
436
Normal
-0.4
141
Tumor
-0.4
277
Tumor
-0.4
642
Normal
-0.4
636
Normal
-0.4
162
Normal
-0.4
494
Normal
-0.4
1022
Normal
-0.4
146
Normal
-0.4
444
Normal
-0.4
186
Normal
-0.5
278
Normal
-0.5
332
Normal
-0.5
432
Normal
-0.6
446
Normal
-0.6
314
Normal
-0.6
616
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
