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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANKRD46 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
48.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
36.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
35.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
29.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
26.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
24.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
21.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
15.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
15.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
14.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANKRD46 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
231
Samples
Sample
Description
TPM
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
37.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
25.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
3.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.3
685
Tumor
0.9
925
Tumor
0.9
915
Tumor
0.9
557
Tumor
0.8
227
Tumor
0.8
445
Tumor
0.7
537
Tumor
0.7
341
Tumor
0.7
267
Tumor
0.7
351
Tumor
0.7
697
Tumor
0.6
663
Tumor
0.6
131
Tumor
0.5
367
Tumor
0.5
463
Tumor
0.5
967
Tumor
0.5
285
Tumor
0.4
413
Tumor
0.4
955
Tumor
0.4
358
Normal
0.4
514
Normal
0.4
137
Tumor
0.4
517
Tumor
0.4
448
Normal
0.4
171
Tumor
0.4
518
Normal
0.4
357
Tumor
0.4
1041
Tumor
0.3
864
Normal
0.3
965
Tumor
0.3
363
Tumor
0.3
554
Normal
0.3
222
Normal
0.3
951
Tumor
0.3
231
Tumor
0.3
715
Tumor
0.3
513
Tumor
0.3
342
Normal
0.3
722
Normal
0.3
443
Tumor
0.3
481
Tumor
0.3
698
Normal
0.3
527
Tumor
0.3
331
Tumor
0.3
471
Tumor
0.2
223
Tumor
0.2
714
Normal
0.2
666
Normal
0.2
727
Tumor
0.2
873
Tumor
0.2
914
Normal
0.2
185
Tumor
0.2
862
Normal
0.2
648
Normal
0.2
1025
Tumor
0.2
963
Tumor
0.2
343
Tumor
0.2
221
Tumor
0.2
387
Tumor
0.2
823
Tumor
0.2
816
Normal
0.2
956
Normal
0.1
877
Tumor
0.1
228
Normal
0.1
534
Normal
0.1
214
Normal
0.1
526
Normal
0.1
368
Normal
0.1
1043
Tumor
0.1
515
Tumor
0.1
431
Tumor
0.1
135
Tumor
0.1
435
Tumor
0.1
257
Tumor
0.1
744
Normal
0.1
314
Normal
0.1
432
Normal
0.1
436
Normal
0.1
462
Normal
0.1
536
Normal
0.1
352
Normal
0.1
924
Normal
0.1
1032
Normal
0.1
918
Normal
0.1
866
Normal
0.1
482
Normal
0.1
912
Normal
0.1
344
Normal
0.1
546
Normal
0.1
1022
Normal
0.1
696
Normal
0.1
922
Normal
0.1
1027
Tumor
0.1
664
Normal
0.1
952
Normal
0.1
365
Tumor
0.1
1026
Normal
0.0
964
Normal
0.0
524
Normal
0.0
353
Tumor
0.0
574
Normal
0.0
516
Normal
0.0
196
Normal
0.0
975
Tumor
0.0
721
Tumor
0.0
218
Normal
0.0
147
Tumor
0.0
385
Tumor
0.0
858
Normal
0.0
852
Normal
0.0
472
Normal
0.0
388
Normal
0.0
672
Normal
0.0
742
Normal
0.0
461
Tumor
0.0
474
Normal
0.0
716
Normal
0.0
874
Normal
0.0
391
Tumor
0.0
868
Normal
0.0
728
Normal
0.0
191
Tumor
0.0
665
Tumor
0.0
232
Normal
0.0
738
Normal
0.0
863
Tumor
0.0
354
Normal
0.0
1046
Normal
0.0
452
Normal
0.0
968
Normal
0.0
535
Tumor
0.0
278
Normal
0.0
851
Tumor
0.0
1028
Normal
0.0
356
Normal
0.0
364
Normal
-0.1
861
Tumor
-0.1
568
Normal
-0.1
558
Normal
-0.1
332
Normal
-0.1
1042
Normal
-0.1
944
Normal
-0.1
142
Normal
-0.1
434
Normal
-0.1
867
Tumor
-0.1
743
Tumor
-0.1
422
Normal
-0.1
528
Normal
-0.1
217
Tumor
-0.1
686
Normal
-0.1
328
Normal
-0.1
271
Tumor
-0.1
414
Normal
-0.1
662
Normal
-0.1
195
Tumor
-0.1
416
Normal
-0.1
857
Tumor
-0.1
881
Tumor
-0.1
412
Normal
-0.1
286
Normal
-0.1
865
Tumor
-0.1
553
Tumor
-0.1
976
Normal
-0.1
954
Normal
-0.1
423
Tumor
-0.1
172
Normal
-0.1
958
Normal
-0.1
723
Tumor
-0.1
446
Normal
-0.1
327
Tumor
-0.1
523
Tumor
-0.1
1045
Tumor
-0.1
212
Normal
-0.1
938
Normal
-0.1
937
Tumor
-0.1
376
Normal
-0.1
824
Normal
-0.1
464
Normal
-0.2
572
Normal
-0.2
533
Tumor
-0.2
926
Normal
-0.2
538
Normal
-0.2
424
Normal
-0.2
456
Normal
-0.2
433
Tumor
-0.2
298
Normal
-0.2
818
Normal
-0.2
283
Tumor
-0.2
661
Tumor
-0.2
1031
Tumor
-0.2
366
Normal
-0.2
1044
Normal
-0.2
911
Tumor
-0.2
713
Tumor
-0.2
277
Tumor
-0.2
392
Normal
-0.2
297
Tumor
-0.2
362
Normal
-0.2
146
Normal
-0.2
913
Tumor
-0.2
455
Tumor
-0.2
564
Normal
-0.2
426
Normal
-0.2
567
Tumor
-0.2
878
Normal
-0.2
312
Normal
-0.2
884
Normal
-0.2
943
Tumor
-0.2
921
Tumor
-0.2
817
Tumor
-0.2
478
Normal
-0.2
361
Tumor
-0.2
671
Tumor
-0.2
261
Tumor
-0.2
415
Tumor
-0.2
186
Normal
-0.2
161
Tumor
-0.3
447
Tumor
-0.3
966
Normal
-0.3
724
Normal
-0.3
428
Normal
-0.3
466
Normal
-0.3
148
Normal
-0.3
192
Normal
-0.3
545
Tumor
-0.3
141
Tumor
-0.3
916
Normal
-0.3
882
Normal
-0.3
396
Normal
-0.3
573
Tumor
-0.3
187
Tumor
-0.3
384
Normal
-0.3
258
Normal
-0.3
188
Normal
-0.3
468
Normal
-0.3
386
Normal
-0.3
213
Tumor
-0.3
136
Normal
-0.3
451
Tumor
-0.3
737
Tumor
-0.3
162
Normal
-0.3
394
Normal
-0.4
132
Normal
-0.4
411
Tumor
-0.4
444
Normal
-0.4
262
Normal
-0.4
571
Tumor
-0.4
284
Normal
-0.4
695
Tumor
-0.4
741
Tumor
-0.4
355
Tumor
-0.4
268
Normal
-0.4
467
Tumor
-0.4
425
Tumor
-0.5
815
Tumor
-0.5
1021
Tumor
-0.5
375
Tumor
-0.5
395
Tumor
-0.5
313
Tumor
-0.5
138
Normal
-0.5
272
Normal
-0.5
393
Tumor
-0.5
923
Tumor
-0.5
224
Normal
-0.5
883
Tumor
-0.6
421
Tumor
-0.6
145
Tumor
-0.6
465
Tumor
-0.6
563
Tumor
-0.7
383
Tumor
-0.7
647
Tumor
-0.7
477
Tumor
-0.7
917
Tumor
-0.8
957
Tumor
-0.8
427
Tumor
-0.8
525
Tumor
-0.9
953
Tumor
-1.0
311
Tumor
-1.0
211
Tumor
-1.1
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
977
Tumor
N/A
615
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
755
Tumor
N/A
635
Tumor
N/A
756
Normal
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
