MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:28.2 nTPM
GTEx:7.5 nTPM
FANTOM5:66.9 Scaled Tags Per Million
Pig:21.7 nTPM
Mouse:9.3 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.7
1833 Male, age 53, unknown 27.6
2586 Male, age 75, left hemisphere 27.6
1870 Female, age 42, unknown 25.4
1830 Male, age 51, unknown 25.2
2828 Female, age 72, unknown 24.6
2411 Female, age 72, unknown 23.3
1827 Male, age 72, unknown 22.2
2019 Male, age 18, unknown 21.7
2219 Male, age 76, both hemispheres 20.4
2666 Male, age 74, left hemisphere 19.1
Dorsal raphe nucleus
nTPM: 24.4
2750 Male, age 76, both hemispheres 29.1
1828 Male, age 53, unknown 25.9
2047 Male, age 72, unknown 24.4
2016 Female, age 72, unknown 22.8
2298 Female, age 72, unknown 19.8
Inferior colliculus
nTPM: 26.0
1848 Female, age 42, unknown 31.4
2849 Male, age 72, unknown 28.2
1890 Male, age 53, unknown 22.6
2097 Female, age 72, unknown 21.7
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 21.4
2502 Female, age 75, unknown 24.7
1947 Male, age 18, unknown 21.0
1795 Male, age 51, unknown 18.6
Periaquaductal grey, dorsal
nTPM: 21.8
2464 Female, age 72, unknown 26.2
1840 Male, age 53, unknown 24.8
1831 Male, age 72, unknown 18.6
2850 Male, age 76, both hemispheres 17.6
Periaquaductal grey, lateral
nTPM: 20.2
2053 Male, age 18, unknown 22.3
2140 Male, age 76, both hemispheres 20.1
2272 Male, age 74, both hemispheres 18.1
Pretectal area
nTPM: 22.4
2667 Female, age 75, unknown 27.6
2316 Male, age 76, right hemisphere 25.4
2825 Male, age 18, unknown 23.8
2224 Female, age 72, unknown 23.7
1817 Female, age 42, unknown 23.5
1815 Male, age 53, unknown 22.7
1816 Male, age 51, unknown 22.7
2407 Male, age 75, both hemispheres 21.7
1944 Female, age 72, unknown 20.0
2273 Male, age 74, both hemispheres 17.9
2007 Male, age 72, unknown 17.7
Red nucleus
nTPM: 28.2
1954 Female, age 42, unknown 33.6
2823 Male, age 76, right hemisphere 31.6
2769 Male, age 72, unknown 31.0
2227 Male, age 72, unknown 30.9
1904 Male, age 53, unknown 30.8
1821 Female, age 72, unknown 30.4
1865 Male, age 51, unknown 28.8
2503 Female, age 72, unknown 28.5
2588 Male, age 74, left hemisphere 26.8
2725 Female, age 75, unknown 22.7
2785 Male, age 18, unknown 22.0
2584 Male, age 75, left hemisphere 21.7
Substantia nigra
nTPM: 23.3
2699 Male, age 18, unknown 29.7
2583 Male, age 75, right hemisphere 25.5
2241 Male, age 72, unknown 24.7
2409 Female, age 72, unknown 24.3
1889 Female, age 72, unknown 23.7
2665 Male, age 74, both hemispheres 22.6
1916 Female, age 42, unknown 22.1
1851 Male, age 51, unknown 22.0
2590 Female, age 75, unknown 21.5
1941 Male, age 53, unknown 17.3
Superior colliculus
nTPM: 23.2
1895 Male, age 76, right hemisphere 27.1
1839 Male, age 51, unknown 25.4
1995 Male, age 72, unknown 24.4
1913 Female, age 42, unknown 23.2
2087 Female, age 72, unknown 22.9
2664 Male, age 75, both hemispheres 22.6
1796 Male, age 53, unknown 22.4
2587 Male, age 74, left hemisphere 21.3
2668 Female, age 75, unknown 21.3
2261 Male, age 18, unknown 21.2
Ventral tegmental area
nTPM: 21.9
2223 Female, age 72, unknown 25.7
2410 Female, age 72, unknown 23.2
1942 Male, age 51, unknown 21.3
2021 Male, age 53, unknown 21.1
2218 Male, age 76, both hemispheres 21.0
1915 Female, age 42, unknown 19.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 139

Max nTPM: 15.8
Min nTPM: 2.1
Std nTPM: 2.4
Median nTPM: 7.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 15.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 15.5
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 14.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 14.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 12.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 11.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 11.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 11.2
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 11.2
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 10.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.9
FF:10158-103A5 76 years, female 66.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 22.4
Min nTPM: 15.8
Sample A Female 17.2
Sample B Female 15.8
Sample C Male 20.7
Sample D Male 22.4
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 24.6
Min nTPM: 13.2
Sample A Female 13.2
Sample B Female 22.6
Sample C Male 23.4
Sample D Male 24.6
Periaqueductal gray
nTPM: 21.7
Samples: 3

Max nTPM: 24.7
Min nTPM: 17.9
Sample B Female 24.7
Sample C Male 22.4
Sample D Male 17.9
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 21.1
Min nTPM: 10.9
Sample A Female 20.7
Sample B Female 10.9
Sample C Male 19.5
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 9.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 9.7
Min nTPM: 8.7
Sample A Male 8.7
Sample B Male 9.1
Sample C Female 9.7
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
69874144 Antisense, RP_050512_02_G03, Mouse strain C57BL/6J (56 days, male) 3.0

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