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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFITM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
125.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2511.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1510.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1328.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1159.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1143.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
905.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
865.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
810.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
805.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
734.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
710.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
699.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
675.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
659.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
540.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
538.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
491.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
472.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
445.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
440.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
403.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
382.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
366.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
355.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
349.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
337.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
331.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
327.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
325.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
299.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
293.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
283.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
283.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
282.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
264.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
258.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
249.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
234.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
232.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
230.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
214.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
213.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
212.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
207.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
203.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
202.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
197.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
196.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
196.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
194.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
194.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
193.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
190.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
188.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
184.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
182.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
182.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
177.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
176.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
175.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
175.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
174.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
172.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
163.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
163.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
161.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
160.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
160.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
158.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
152.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
148.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
145.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
144.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
142.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
142.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
142.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
142.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
141.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
138.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
137.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
137.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
136.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
136.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
135.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
133.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
132.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
131.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
130.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
130.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
130.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
129.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
127.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
124.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
120.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
118.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
117.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
116.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
113.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
112.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
110.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
108.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
108.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
107.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
105.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
105.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
104.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
103.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
101.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
99.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
99.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
98.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
97.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
97.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
97.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
96.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
95.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
95.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
95.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
93.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
91.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
90.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
90.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
90.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
89.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
88.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
87.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
87.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
87.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
86.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
86.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
86.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
85.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
84.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
84.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
83.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
83.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
82.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
81.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
81.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
80.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
78.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
77.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
77.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
76.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
76.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
74.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
74.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
73.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
73.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
72.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
72.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
72.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
72.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
72.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
70.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
69.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
68.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
68.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
68.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
67.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
66.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
65.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
65.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
65.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
64.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
64.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
63.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
62.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
61.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
61.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
59.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
59.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
59.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
58.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
58.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
57.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
55.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
55.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
55.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
55.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
54.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
54.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
54.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
53.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
52.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
52.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
50.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
50.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
50.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
49.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
49.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
48.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
46.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
45.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
45.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
45.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
45.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
44.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
43.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
42.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
42.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
42.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
42.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
42.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
41.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
41.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
40.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
39.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
39.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
39.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
39.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
37.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
37.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
36.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
36.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
36.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
36.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
34.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
34.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
34.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
34.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
33.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
33.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
32.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
32.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
30.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
29.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
28.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
28.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
26.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
24.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
23.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
23.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
22.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
22.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
22.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
19.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
19.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
14.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IFITM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
78.7
Number of samples
231
Samples
Sample
Description
TPM
DO23514
0 years, male, NA, stage:2, alive, 1290 days
714.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
418.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
376.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
336.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
335.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
328.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
317.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
313.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
303.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
298.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
273.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
255.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
254.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
250.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
240.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
227.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
218.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
213.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
207.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
207.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
201.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
197.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
196.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
187.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
184.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
183.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
180.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
180.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
177.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
175.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
174.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
169.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
165.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
165.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
159.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
158.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
157.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
154.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
153.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
153.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
152.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
149.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
146.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
146.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
141.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
140.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
134.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
131.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
130.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
129.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
126.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
123.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
119.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
115.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
111.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
108.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
107.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
105.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
104.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
104.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
102.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
102.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
101.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
98.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
95.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
91.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
89.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
89.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
89.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
88.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
86.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
82.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
81.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
81.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
79.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
79.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
78.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
76.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
76.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
69.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
68.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
64.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
64.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
62.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
60.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
59.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
58.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
56.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
55.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
55.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
53.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
53.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
53.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
52.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
52.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
50.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
47.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
44.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
37.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
36.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
35.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
35.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
34.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
34.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
34.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
33.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
33.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
32.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
29.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
26.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
23.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
22.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
22.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
15.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
12.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
2.1
573
Tumor
1.9
221
Tumor
1.8
545
Tumor
1.6
195
Tumor
1.5
983
Tumor
1.4
557
Tumor
1.3
883
Tumor
1.2
1015
Tumor
1.0
343
Tumor
1.0
697
Tumor
1.0
861
Tumor
1.0
493
Tumor
0.9
443
Tumor
0.9
943
Tumor
0.9
467
Tumor
0.9
536
Normal
0.8
917
Tumor
0.7
524
Normal
0.7
527
Tumor
0.7
361
Tumor
0.6
815
Tumor
0.6
365
Tumor
0.5
537
Tumor
0.5
385
Tumor
0.5
393
Tumor
0.5
187
Tumor
0.4
538
Normal
0.4
311
Tumor
0.4
823
Tumor
0.3
223
Tumor
0.3
283
Tumor
0.3
955
Tumor
0.3
395
Tumor
0.3
1041
Tumor
0.3
415
Tumor
0.3
478
Normal
0.3
222
Normal
0.3
716
Normal
0.2
966
Normal
0.2
471
Tumor
0.2
978
Normal
0.2
113
Tumor
0.2
192
Normal
0.1
857
Tumor
0.1
224
Normal
0.1
713
Tumor
0.1
647
Tumor
0.1
937
Tumor
0.1
112
Tumor
0.1
916
Normal
0.1
617
Tumor
0.1
982
Normal
0.1
217
Tumor
0.1
416
Normal
0.1
211
Tumor
0.1
284
Normal
0.1
918
Normal
0.1
523
Tumor
0.0
213
Tumor
0.0
196
Normal
0.0
1014
Normal
0.0
1025
Tumor
0.0
915
Tumor
0.0
492
Normal
0.0
483
Tumor
0.0
218
Normal
0.0
498
Normal
0.0
554
Normal
0.0
327
Tumor
0.0
984
Normal
0.0
212
Normal
0.0
981
Tumor
0.0
386
Normal
0.0
171
Tumor
0.0
394
Normal
-0.1
185
Tumor
-0.1
344
Normal
-0.1
387
Tumor
-0.1
342
Normal
-0.1
228
Normal
-0.1
663
Tumor
-0.1
956
Normal
-0.1
352
Normal
-0.1
285
Tumor
-0.1
665
Tumor
-0.1
516
Normal
-0.1
1016
Normal
-0.1
696
Normal
-0.1
434
Normal
-0.1
553
Tumor
-0.1
975
Tumor
-0.1
494
Normal
-0.1
286
Normal
-0.1
963
Tumor
-0.1
267
Tumor
-0.1
526
Normal
-0.2
881
Tumor
-0.2
533
Tumor
-0.2
865
Tumor
-0.2
685
Tumor
-0.2
413
Tumor
-0.2
514
Normal
-0.2
873
Tumor
-0.2
884
Normal
-0.2
124
Normal
-0.2
864
Normal
-0.2
1044
Normal
-0.2
924
Normal
-0.2
515
Tumor
-0.2
721
Tumor
-0.2
574
Normal
-0.2
391
Tumor
-0.2
488
Normal
-0.2
944
Normal
-0.2
1043
Tumor
-0.2
874
Normal
-0.2
1026
Normal
-0.2
412
Normal
-0.2
364
Normal
-0.2
447
Tumor
-0.2
451
Tumor
-0.2
452
Normal
-0.2
388
Normal
-0.2
953
Tumor
-0.3
1042
Normal
-0.3
353
Tumor
-0.3
954
Normal
-0.3
866
Normal
-0.3
392
Normal
-0.3
666
Normal
-0.3
214
Normal
-0.3
354
Normal
-0.3
111
Normal
-0.3
546
Normal
-0.3
1032
Normal
-0.3
461
Tumor
-0.3
448
Normal
-0.3
686
Normal
-0.3
135
Tumor
-0.3
497
Tumor
-0.3
1028
Normal
-0.3
714
Normal
-0.3
191
Tumor
-0.3
958
Normal
-0.3
755
Tumor
-0.3
396
Normal
-0.3
1045
Tumor
-0.3
1022
Normal
-0.3
976
Normal
-0.3
914
Normal
-0.3
814
Normal
-0.3
262
Normal
-0.3
358
Normal
-0.3
938
Normal
-0.3
778
Normal
-0.3
355
Tumor
-0.3
142
Normal
-0.3
126
Normal
-0.4
878
Normal
-0.4
672
Normal
-0.4
862
Normal
-0.4
912
Normal
-0.4
491
Tumor
-0.4
852
Normal
-0.4
882
Normal
-0.4
816
Normal
-0.4
518
Normal
-0.4
446
Normal
-0.4
926
Normal
-0.4
186
Normal
-0.4
297
Tumor
-0.4
722
Normal
-0.4
868
Normal
-0.4
817
Tumor
-0.4
383
Tumor
-0.4
356
Normal
-0.4
328
Normal
-0.4
257
Tumor
-0.4
968
Normal
-0.4
484
Normal
-0.4
662
Normal
-0.4
572
Normal
-0.4
877
Tumor
-0.4
867
Tumor
-0.5
558
Normal
-0.5
474
Normal
-0.5
913
Tumor
-0.5
431
Tumor
-0.5
444
Normal
-0.5
128
Normal
-0.5
922
Normal
-0.5
231
Tumor
-0.5
188
Normal
-0.5
967
Tumor
-0.5
477
Tumor
-0.5
728
Normal
-0.5
952
Normal
-0.5
534
Normal
-0.5
661
Tumor
-0.5
1031
Tumor
-0.5
227
Tumor
-0.5
421
Tumor
-0.5
141
Tumor
-0.5
368
Normal
-0.5
464
Normal
-0.6
535
Tumor
-0.6
1046
Normal
-0.6
824
Normal
-0.6
433
Tumor
-0.6
462
Normal
-0.6
147
Tumor
-0.6
858
Normal
-0.6
362
Normal
-0.6
695
Tumor
-0.6
664
Normal
-0.6
671
Tumor
-0.6
148
Normal
-0.6
482
Normal
-0.6
977
Tumor
-0.6
925
Tumor
-0.6
964
Normal
-0.6
473
Tumor
-0.6
648
Normal
-0.6
472
Normal
-0.6
923
Tumor
-0.6
351
Tumor
-0.6
528
Normal
-0.6
145
Tumor
-0.6
455
Tumor
-0.6
921
Tumor
-0.6
161
Tumor
-0.6
162
Normal
-0.6
481
Tumor
-0.6
738
Normal
-0.6
723
Tumor
-0.6
813
Tumor
-0.6
525
Tumor
-0.6
744
Normal
-0.6
384
Normal
-0.6
357
Tumor
-0.6
456
Normal
-0.6
1013
Tumor
-0.7
125
Tumor
-0.7
268
Normal
-0.7
818
Normal
-0.7
114
Normal
-0.7
341
Tumor
-0.7
756
Normal
-0.7
563
Tumor
-0.7
427
Tumor
-0.7
851
Tumor
-0.7
261
Tumor
-0.7
271
Tumor
-0.7
487
Tumor
-0.7
172
Normal
-0.7
123
Tumor
-0.7
636
Normal
-0.8
127
Tumor
-0.8
411
Tumor
-0.8
375
Tumor
-0.8
568
Normal
-0.8
466
Normal
-0.8
436
Normal
-0.8
642
Normal
-0.8
468
Normal
-0.8
698
Normal
-0.8
432
Normal
-0.8
376
Normal
-0.8
332
Normal
-0.8
463
Tumor
-0.8
363
Tumor
-0.9
312
Normal
-0.9
272
Normal
-0.9
517
Tumor
-0.9
366
Normal
-0.9
425
Tumor
-0.9
564
Normal
-0.9
724
Normal
-0.9
278
Normal
-0.9
367
Tumor
-0.9
232
Normal
-0.9
742
Normal
-0.9
641
Tumor
-0.9
435
Tumor
-0.9
571
Tumor
-0.9
741
Tumor
-0.9
786
Normal
-0.9
616
Normal
-0.9
635
Tumor
-0.9
136
Normal
-0.9
146
Normal
-0.9
785
Tumor
-1.0
628
Normal
-1.0
957
Tumor
-1.0
618
Normal
-1.0
746
Normal
-1.0
138
Normal
-1.0
513
Tumor
-1.0
1027
Tumor
-1.0
331
Tumor
-1.0
863
Tumor
-1.0
277
Tumor
-1.0
737
Tumor
-1.0
1021
Tumor
-1.1
137
Tumor
-1.1
911
Tumor
-1.1
298
Normal
-1.1
465
Tumor
-1.1
258
Normal
-1.2
777
Tumor
-1.2
314
Normal
-1.2
132
Normal
-1.2
567
Tumor
-1.2
951
Tumor
-1.2
745
Tumor
-1.2
727
Tumor
-1.2
428
Normal
-1.4
424
Normal
-1.4
743
Tumor
-1.4
313
Tumor
-1.4
131
Tumor
-1.4
422
Normal
-1.5
445
Tumor
-1.5
423
Tumor
-1.6
615
Tumor
-1.7
414
Normal
-1.7
965
Tumor
-1.7
627
Tumor
-1.8
426
Normal
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.