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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EVI2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
88.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
35.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
20.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
2.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
2.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EVI2B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.6
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
198.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
74.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
64.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
54.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
51.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
48.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
45.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
39.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
3.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
2.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
2.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
1.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
1.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
1.7
311
Tumor
1.6
211
Tumor
1.6
535
Tumor
1.6
724
Normal
1.5
661
Tumor
1.3
524
Normal
1.3
917
Tumor
1.2
478
Normal
1.1
861
Tumor
0.9
943
Tumor
0.9
492
Normal
0.9
686
Normal
0.9
498
Normal
0.9
697
Tumor
0.8
538
Normal
0.8
716
Normal
0.8
447
Tumor
0.8
415
Tumor
0.8
467
Tumor
0.8
434
Normal
0.8
385
Tumor
0.8
954
Normal
0.8
491
Tumor
0.7
721
Tumor
0.7
217
Tumor
0.7
343
Tumor
0.7
224
Normal
0.7
978
Normal
0.7
525
Tumor
0.7
952
Normal
0.7
213
Tumor
0.7
262
Normal
0.7
814
Normal
0.6
284
Normal
0.6
1028
Normal
0.6
192
Normal
0.6
328
Normal
0.6
714
Normal
0.6
212
Normal
0.6
1031
Tumor
0.6
272
Normal
0.6
744
Normal
0.6
713
Tumor
0.6
125
Tumor
0.6
554
Normal
0.6
916
Normal
0.6
1042
Normal
0.6
363
Tumor
0.5
444
Normal
0.5
383
Tumor
0.5
1044
Normal
0.5
1043
Tumor
0.5
867
Tumor
0.5
823
Tumor
0.5
672
Normal
0.5
362
Normal
0.5
355
Tumor
0.5
364
Normal
0.5
518
Normal
0.5
516
Normal
0.5
195
Tumor
0.5
868
Normal
0.5
984
Normal
0.5
914
Normal
0.4
232
Normal
0.4
955
Tumor
0.4
283
Tumor
0.4
558
Normal
0.4
662
Normal
0.4
563
Tumor
0.4
391
Tumor
0.4
944
Normal
0.4
141
Tumor
0.4
268
Normal
0.4
386
Normal
0.4
471
Tumor
0.4
258
Normal
0.4
384
Normal
0.4
722
Normal
0.4
528
Normal
0.4
778
Normal
0.4
474
Normal
0.4
696
Normal
0.4
851
Tumor
0.4
553
Tumor
0.4
573
Tumor
0.4
365
Tumor
0.4
124
Normal
0.3
938
Normal
0.3
1015
Tumor
0.3
494
Normal
0.3
852
Normal
0.3
344
Normal
0.3
461
Tumor
0.3
728
Normal
0.3
514
Normal
0.3
312
Normal
0.3
493
Tumor
0.3
416
Normal
0.3
488
Normal
0.3
472
Normal
0.3
956
Normal
0.3
126
Normal
0.3
286
Normal
0.3
375
Tumor
0.3
421
Tumor
0.3
468
Normal
0.2
546
Normal
0.2
1026
Normal
0.2
526
Normal
0.2
396
Normal
0.2
816
Normal
0.2
858
Normal
0.2
191
Tumor
0.2
223
Tumor
0.2
666
Normal
0.2
862
Normal
0.2
878
Normal
0.2
628
Normal
0.2
455
Tumor
0.2
786
Normal
0.2
664
Normal
0.2
545
Tumor
0.2
857
Tumor
0.2
142
Normal
0.2
617
Tumor
0.2
1016
Normal
0.2
297
Tumor
0.2
815
Tumor
0.2
451
Tumor
0.2
574
Normal
0.1
864
Normal
0.1
138
Normal
0.1
874
Normal
0.1
366
Normal
0.1
671
Tumor
0.1
1046
Normal
0.1
412
Normal
0.1
228
Normal
0.1
218
Normal
0.1
912
Normal
0.1
813
Tumor
0.1
882
Normal
0.1
1032
Normal
0.1
484
Normal
0.1
188
Normal
0.1
918
Normal
0.1
926
Normal
0.1
424
Normal
0.1
557
Tumor
0.1
456
Normal
0.1
866
Normal
0.0
352
Normal
0.0
356
Normal
0.0
818
Normal
0.0
392
Normal
0.0
698
Normal
0.0
715
Tumor
0.0
537
Tumor
0.0
388
Normal
0.0
1022
Normal
0.0
267
Tumor
0.0
448
Normal
0.0
742
Normal
0.0
884
Normal
0.0
114
Normal
0.0
146
Normal
0.0
1045
Tumor
0.0
452
Normal
0.0
756
Normal
0.0
817
Tumor
0.0
376
Normal
0.0
642
Normal
0.0
738
Normal
0.0
368
Normal
0.0
824
Normal
0.0
261
Tumor
0.0
534
Normal
-0.1
913
Tumor
-0.1
111
Normal
-0.1
481
Tumor
-0.1
413
Tumor
-0.1
983
Tumor
-0.1
214
Normal
-0.1
727
Tumor
-0.1
665
Tumor
-0.1
648
Normal
-0.1
231
Tumor
-0.1
723
Tumor
-0.1
1014
Normal
-0.1
395
Tumor
-0.1
482
Normal
-0.1
432
Normal
-0.1
462
Normal
-0.1
427
Tumor
-0.1
924
Normal
-0.2
922
Normal
-0.2
187
Tumor
-0.2
428
Normal
-0.2
636
Normal
-0.2
446
Normal
-0.2
685
Tumor
-0.2
278
Normal
-0.2
422
Normal
-0.2
394
Normal
-0.2
466
Normal
-0.2
925
Tumor
-0.2
564
Normal
-0.2
951
Tumor
-0.2
746
Normal
-0.2
982
Normal
-0.2
135
Tumor
-0.2
572
Normal
-0.3
616
Normal
-0.3
414
Normal
-0.3
785
Tumor
-0.3
367
Tumor
-0.3
137
Tumor
-0.3
353
Tumor
-0.3
298
Normal
-0.3
354
Normal
-0.3
136
Normal
-0.3
877
Tumor
-0.3
865
Tumor
-0.3
953
Tumor
-0.3
387
Tumor
-0.3
618
Normal
-0.3
257
Tumor
-0.3
358
Normal
-0.3
915
Tumor
-0.3
426
Normal
-0.3
483
Tumor
-0.3
145
Tumor
-0.3
148
Normal
-0.4
271
Tumor
-0.4
641
Tumor
-0.4
881
Tumor
-0.4
227
Tumor
-0.4
331
Tumor
-0.4
1025
Tumor
-0.4
663
Tumor
-0.4
162
Normal
-0.4
185
Tumor
-0.4
568
Normal
-0.4
327
Tumor
-0.4
921
Tumor
-0.5
863
Tumor
-0.5
332
Normal
-0.5
172
Normal
-0.5
883
Tumor
-0.5
433
Tumor
-0.5
873
Tumor
-0.5
464
Normal
-0.5
161
Tumor
-0.5
132
Normal
-0.5
755
Tumor
-0.5
515
Tumor
-0.5
517
Tumor
-0.5
423
Tumor
-0.5
523
Tumor
-0.6
1027
Tumor
-0.6
627
Tumor
-0.6
527
Tumor
-0.6
342
Normal
-0.6
937
Tumor
-0.6
393
Tumor
-0.6
285
Tumor
-0.6
113
Tumor
-0.7
977
Tumor
-0.7
923
Tumor
-0.7
463
Tumor
-0.7
196
Normal
-0.7
567
Tumor
-0.7
361
Tumor
-0.7
222
Normal
-0.7
277
Tumor
-0.7
473
Tumor
-0.7
436
Normal
-0.7
186
Normal
-0.7
911
Tumor
-0.7
533
Tumor
-0.7
497
Tumor
-0.7
477
Tumor
-0.7
1021
Tumor
-0.7
513
Tumor
-0.8
341
Tumor
-0.8
571
Tumor
-0.8
314
Normal
-0.8
615
Tumor
-0.8
128
Normal
-0.8
131
Tumor
-0.9
443
Tumor
-0.9
1041
Tumor
-0.9
465
Tumor
-0.9
127
Tumor
-0.9
147
Tumor
-1.0
221
Tumor
-1.0
351
Tumor
-1.0
411
Tumor
-1.0
431
Tumor
-1.0
737
Tumor
-1.0
425
Tumor
-1.0
745
Tumor
-1.0
741
Tumor
-1.0
981
Tumor
-1.1
695
Tumor
-1.1
171
Tumor
-1.1
777
Tumor
-1.2
487
Tumor
-1.2
445
Tumor
-1.3
647
Tumor
-1.3
635
Tumor
-1.3
313
Tumor
-1.3
112
Tumor
-1.4
357
Tumor
-1.5
1013
Tumor
-1.6
123
Tumor
-1.6
743
Tumor
-1.6
435
Tumor
-1.6
957
Tumor
N/A
958
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
965
Tumor
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
