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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCYT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
348.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
319.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
259.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
259.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
255.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
253.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
244.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
224.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
221.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
216.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
210.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
210.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
200.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
194.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
191.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
191.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
188.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
186.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
180.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
178.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
177.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
176.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
175.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
171.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
170.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
168.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
167.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
165.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
163.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
162.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
162.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
161.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
161.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
160.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
160.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
157.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
156.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
155.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
150.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
148.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
147.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
146.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
146.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
145.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
144.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
144.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
143.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
143.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
143.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
142.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
142.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
139.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
137.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
137.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
136.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
135.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
134.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
134.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
133.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
133.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
132.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
131.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
131.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
131.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
131.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
131.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
130.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
130.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
130.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
130.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
130.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
129.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
129.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
128.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
127.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
127.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
127.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
127.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
126.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
125.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
125.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
124.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
122.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
119.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
119.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
118.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
118.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
118.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
117.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
117.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
117.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
116.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
115.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
115.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
115.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
115.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
114.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
113.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
112.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
112.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
111.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
110.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
110.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
110.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
109.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
108.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
108.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
108.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
108.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
108.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
106.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
105.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
104.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
104.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
104.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
103.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
103.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
102.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
102.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
102.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
101.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
101.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
99.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
98.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
97.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
96.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
96.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
96.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
96.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
96.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
95.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
95.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
95.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
95.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
95.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
94.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
94.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
94.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
93.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
93.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
93.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
93.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
93.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
92.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
92.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
92.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
91.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
90.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
90.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
90.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
90.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
89.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
88.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
87.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
86.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
86.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
86.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
85.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
84.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
84.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
83.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
82.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
82.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
82.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
81.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
81.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
80.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
80.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
80.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
79.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
79.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
79.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
79.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
79.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
79.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
78.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
78.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
78.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
78.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
78.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
78.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
78.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
77.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
77.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
77.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
76.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
76.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
76.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
76.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
76.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
75.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
75.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
75.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
75.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
75.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
74.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
74.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
74.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
73.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
73.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
73.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
73.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
73.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
72.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
72.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
72.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
71.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
71.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
71.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
71.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
71.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
70.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
70.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
69.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
68.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
68.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
68.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
67.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
66.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
66.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
66.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
66.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
65.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
65.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
65.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
65.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
64.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
64.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
64.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
64.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
63.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
63.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
63.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
63.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
62.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
62.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
61.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
61.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
61.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
60.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
60.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
60.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
59.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
57.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
56.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
54.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
53.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
53.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
52.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
52.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
51.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
50.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
50.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
50.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
50.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
49.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
49.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
48.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
48.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
48.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
48.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
48.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
48.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
48.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
47.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
46.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
45.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
45.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
44.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
44.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
44.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
44.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
43.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
43.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
42.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
42.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
41.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
40.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
40.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
39.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
38.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
37.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
35.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
33.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
32.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
30.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
29.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
27.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
25.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PCYT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
47.6
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
164.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
159.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
148.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
141.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
138.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
135.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
133.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
132.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
131.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
127.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
118.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
117.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
111.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
106.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
99.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
98.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
97.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
97.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
97.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
96.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
95.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
95.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
94.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
93.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
91.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
90.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
90.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
90.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
87.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
85.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
85.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
81.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
80.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
80.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
79.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
76.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
76.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
76.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
73.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
70.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
69.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
69.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
68.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
68.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
68.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
67.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
67.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
67.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
66.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
65.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
65.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
64.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
63.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
63.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
63.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
62.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
62.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
62.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
61.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
61.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
60.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
59.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
59.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
58.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
58.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
55.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
53.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
52.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
52.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
52.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
51.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
50.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
50.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
49.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
48.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
48.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
48.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
48.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
48.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
48.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
47.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
47.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
46.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
44.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
44.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
43.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
43.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
42.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
41.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
41.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
41.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
40.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
40.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
39.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
38.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
35.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
35.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
35.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
35.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
34.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
34.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
34.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
33.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
33.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
32.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
32.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
32.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
31.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
30.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
28.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
28.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
27.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
26.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
26.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
25.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
23.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
23.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
20.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
741
Tumor
1.5
1027
Tumor
1.5
435
Tumor
1.4
695
Tumor
1.3
477
Tumor
1.2
981
Tumor
1.2
533
Tumor
0.9
423
Tumor
0.8
123
Tumor
0.8
112
Tumor
0.7
911
Tumor
0.7
965
Tumor
0.6
746
Normal
0.6
745
Tumor
0.6
298
Normal
0.6
727
Tumor
0.6
127
Tumor
0.5
957
Tumor
0.5
698
Normal
0.5
342
Normal
0.5
465
Tumor
0.5
867
Tumor
0.5
714
Normal
0.5
915
Tumor
0.5
755
Tumor
0.5
196
Normal
0.5
818
Normal
0.5
615
Tumor
0.5
222
Normal
0.5
882
Normal
0.4
1026
Normal
0.4
436
Normal
0.4
433
Tumor
0.4
141
Tumor
0.4
432
Normal
0.4
953
Tumor
0.4
924
Normal
0.4
456
Normal
0.4
361
Tumor
0.4
862
Normal
0.4
824
Normal
0.4
517
Tumor
0.4
878
Normal
0.4
744
Normal
0.4
1046
Normal
0.4
482
Normal
0.4
261
Tumor
0.4
513
Tumor
0.4
162
Normal
0.4
1022
Normal
0.4
554
Normal
0.4
616
Normal
0.4
977
Tumor
0.4
257
Tumor
0.3
858
Normal
0.3
742
Normal
0.3
756
Normal
0.3
128
Normal
0.3
132
Normal
0.3
738
Normal
0.3
518
Normal
0.3
861
Tumor
0.3
952
Normal
0.3
147
Tumor
0.3
618
Normal
0.3
723
Tumor
0.3
484
Normal
0.3
448
Normal
0.3
232
Normal
0.3
186
Normal
0.3
148
Normal
0.3
648
Normal
0.3
938
Normal
0.3
172
Normal
0.3
487
Tumor
0.3
431
Tumor
0.3
642
Normal
0.3
332
Normal
0.3
816
Normal
0.3
488
Normal
0.3
327
Tumor
0.3
358
Normal
0.3
412
Normal
0.2
366
Normal
0.2
426
Normal
0.2
376
Normal
0.2
142
Normal
0.2
864
Normal
0.2
218
Normal
0.2
466
Normal
0.2
452
Normal
0.2
564
Normal
0.2
912
Normal
0.2
685
Tumor
0.2
1028
Normal
0.2
462
Normal
0.2
568
Normal
0.2
954
Normal
0.2
394
Normal
0.2
228
Normal
0.2
964
Normal
0.2
728
Normal
0.2
313
Tumor
0.2
546
Normal
0.2
357
Tumor
0.2
286
Normal
0.2
956
Normal
0.2
411
Tumor
0.2
553
Tumor
0.2
982
Normal
0.2
778
Normal
0.2
445
Tumor
0.2
214
Normal
0.2
516
Normal
0.2
341
Tumor
0.2
111
Normal
0.2
635
Tumor
0.1
664
Normal
0.1
392
Normal
0.1
1032
Normal
0.1
422
Normal
0.1
866
Normal
0.1
696
Normal
0.1
922
Normal
0.1
534
Normal
0.1
944
Normal
0.1
114
Normal
0.1
356
Normal
0.1
481
Tumor
0.1
926
Normal
0.1
272
Normal
0.1
138
Normal
0.1
468
Normal
0.1
868
Normal
0.1
666
Normal
0.1
955
Tumor
0.1
877
Tumor
0.1
572
Normal
0.1
514
Normal
0.1
124
Normal
0.1
966
Normal
0.1
414
Normal
0.1
526
Normal
0.1
386
Normal
0.1
171
Tumor
0.1
278
Normal
0.1
425
Tumor
0.1
146
Normal
0.1
716
Normal
0.1
1014
Normal
0.1
722
Normal
0.1
937
Tumor
0.1
914
Normal
0.1
968
Normal
0.0
314
Normal
0.0
474
Normal
0.0
424
Normal
0.0
558
Normal
0.0
416
Normal
0.0
628
Normal
0.0
396
Normal
0.0
428
Normal
0.0
258
Normal
0.0
1016
Normal
0.0
388
Normal
0.0
786
Normal
0.0
344
Normal
0.0
958
Normal
0.0
852
Normal
0.0
1044
Normal
0.0
262
Normal
0.0
777
Tumor
0.0
231
Tumor
0.0
574
Normal
0.0
136
Normal
0.0
1043
Tumor
0.0
352
Normal
0.0
354
Normal
0.0
874
Normal
0.0
328
Normal
0.0
464
Normal
0.0
636
Normal
0.0
923
Tumor
0.0
472
Normal
0.0
365
Tumor
0.0
494
Normal
0.0
1041
Tumor
0.0
662
Normal
0.0
1042
Normal
0.0
446
Normal
0.0
387
Tumor
0.0
884
Normal
0.0
271
Tumor
0.0
284
Normal
0.0
451
Tumor
0.0
364
Normal
0.0
137
Tumor
-0.1
523
Tumor
-0.1
978
Normal
-0.1
686
Normal
-0.1
873
Tumor
-0.1
368
Normal
-0.1
355
Tumor
-0.1
161
Tumor
-0.1
1025
Tumor
-0.1
976
Normal
-0.1
647
Tumor
-0.1
528
Normal
-0.1
434
Normal
-0.1
515
Tumor
-0.1
737
Tumor
-0.1
865
Tumor
-0.1
212
Normal
-0.1
227
Tumor
-0.1
571
Tumor
-0.1
1021
Tumor
-0.1
267
Tumor
-0.1
567
Tumor
-0.2
126
Normal
-0.2
1045
Tumor
-0.2
984
Normal
-0.2
918
Normal
-0.2
221
Tumor
-0.2
312
Normal
-0.2
478
Normal
-0.2
1013
Tumor
-0.2
224
Normal
-0.2
473
Tumor
-0.2
663
Tumor
-0.2
883
Tumor
-0.2
538
Normal
-0.2
131
Tumor
-0.2
393
Tumor
-0.2
863
Tumor
-0.2
627
Tumor
-0.2
921
Tumor
-0.3
1015
Tumor
-0.3
353
Tumor
-0.3
384
Normal
-0.3
444
Normal
-0.3
563
Tumor
-0.3
975
Tumor
-0.3
925
Tumor
-0.3
415
Tumor
-0.3
963
Tumor
-0.3
362
Normal
-0.3
188
Normal
-0.3
916
Normal
-0.3
967
Tumor
-0.3
277
Tumor
-0.3
268
Normal
-0.3
297
Tumor
-0.4
185
Tumor
-0.4
1031
Tumor
-0.4
483
Tumor
-0.4
817
Tumor
-0.4
498
Normal
-0.4
524
Normal
-0.4
573
Tumor
-0.4
492
Normal
-0.4
537
Tumor
-0.4
213
Tumor
-0.4
525
Tumor
-0.4
285
Tumor
-0.4
951
Tumor
-0.4
217
Tumor
-0.4
367
Tumor
-0.4
497
Tumor
-0.4
391
Tumor
-0.4
983
Tumor
-0.4
375
Tumor
-0.5
113
Tumor
-0.5
785
Tumor
-0.5
672
Normal
-0.5
421
Tumor
-0.5
447
Tumor
-0.5
724
Normal
-0.5
536
Normal
-0.5
455
Tumor
-0.5
351
Tumor
-0.5
491
Tumor
-0.5
813
Tumor
-0.6
413
Tumor
-0.6
467
Tumor
-0.6
145
Tumor
-0.6
557
Tumor
-0.6
851
Tumor
-0.6
443
Tumor
-0.6
192
Normal
-0.6
857
Tumor
-0.6
715
Tumor
-0.6
463
Tumor
-0.7
617
Tumor
-0.7
195
Tumor
-0.7
713
Tumor
-0.7
461
Tumor
-0.7
823
Tumor
-0.7
363
Tumor
-0.7
743
Tumor
-0.7
814
Normal
-0.7
187
Tumor
-0.7
427
Tumor
-0.7
665
Tumor
-0.7
545
Tumor
-0.8
331
Tumor
-0.8
191
Tumor
-0.8
135
Tumor
-0.8
641
Tumor
-0.8
671
Tumor
-0.8
721
Tumor
-0.8
493
Tumor
-0.8
913
Tumor
-0.9
223
Tumor
-0.9
881
Tumor
-0.9
125
Tumor
-1.0
471
Tumor
-1.0
527
Tumor
-1.0
661
Tumor
-1.0
283
Tumor
-1.1
697
Tumor
-1.1
943
Tumor
-1.2
815
Tumor
-1.2
383
Tumor
-1.3
343
Tumor
-1.3
917
Tumor
-1.3
395
Tumor
-1.3
311
Tumor
-1.4
385
Tumor
-1.6
535
Tumor
-1.6
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
