We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
25.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
18.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
27.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
22.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
14.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
977
Tumor
1.2
965
Tumor
1.1
957
Tumor
1.0
937
Tumor
1.0
951
Tumor
0.9
497
Tumor
0.9
1013
Tumor
0.9
921
Tumor
0.9
411
Tumor
0.8
1031
Tumor
0.8
533
Tumor
0.8
865
Tumor
0.7
131
Tumor
0.7
1041
Tumor
0.7
355
Tumor
0.7
1021
Tumor
0.7
983
Tumor
0.7
123
Tumor
0.7
487
Tumor
0.6
523
Tumor
0.6
545
Tumor
0.6
553
Tumor
0.6
211
Tumor
0.6
385
Tumor
0.6
1025
Tumor
0.5
473
Tumor
0.5
617
Tumor
0.5
171
Tumor
0.5
537
Tumor
0.5
695
Tumor
0.5
286
Normal
0.4
743
Tumor
0.4
1015
Tumor
0.4
943
Tumor
0.4
737
Tumor
0.4
493
Tumor
0.4
161
Tumor
0.4
343
Tumor
0.4
367
Tumor
0.4
471
Tumor
0.4
925
Tumor
0.4
1043
Tumor
0.4
861
Tumor
0.4
415
Tumor
0.4
877
Tumor
0.3
313
Tumor
0.3
952
Normal
0.3
975
Tumor
0.3
981
Tumor
0.3
915
Tumor
0.3
341
Tumor
0.3
527
Tumor
0.3
741
Tumor
0.3
285
Tumor
0.3
635
Tumor
0.3
386
Normal
0.3
744
Normal
0.3
492
Normal
0.3
491
Tumor
0.3
396
Normal
0.3
867
Tumor
0.2
383
Tumor
0.2
874
Normal
0.2
862
Normal
0.2
141
Tumor
0.2
477
Tumor
0.2
392
Normal
0.2
715
Tumor
0.2
112
Tumor
0.2
923
Tumor
0.2
451
Tumor
0.2
554
Normal
0.2
393
Tumor
0.2
483
Tumor
0.2
351
Tumor
0.2
647
Tumor
0.2
967
Tumor
0.2
727
Tumor
0.2
538
Normal
0.2
823
Tumor
0.2
813
Tumor
0.2
357
Tumor
0.1
661
Tumor
0.1
966
Normal
0.1
535
Tumor
0.1
1014
Normal
0.1
963
Tumor
0.1
878
Normal
0.1
911
Tumor
0.1
864
Normal
0.1
777
Tumor
0.1
376
Normal
0.1
277
Tumor
0.1
384
Normal
0.1
461
Tumor
0.1
954
Normal
0.1
368
Normal
0.1
755
Tumor
0.1
984
Normal
0.1
465
Tumor
0.1
814
Normal
0.1
227
Tumor
0.1
375
Tumor
0.1
231
Tumor
0.1
135
Tumor
0.1
953
Tumor
0.1
261
Tumor
0.1
524
Normal
0.1
525
Tumor
0.1
478
Normal
0.1
863
Tumor
0.1
958
Normal
0.1
697
Tumor
0.1
883
Tumor
0.1
126
Normal
0.1
431
Tumor
0.1
391
Tumor
0.0
884
Normal
0.0
817
Tumor
0.0
924
Normal
0.0
746
Normal
0.0
113
Tumor
0.0
228
Normal
0.0
914
Normal
0.0
955
Tumor
0.0
882
Normal
0.0
663
Tumor
0.0
363
Tumor
0.0
412
Normal
0.0
447
Tumor
0.0
388
Normal
0.0
685
Tumor
0.0
881
Tumor
0.0
536
Normal
0.0
873
Tumor
0.0
1026
Normal
0.0
444
Normal
0.0
918
Normal
0.0
484
Normal
0.0
944
Normal
0.0
498
Normal
0.0
387
Tumor
0.0
364
Normal
0.0
1042
Normal
0.0
427
Tumor
0.0
938
Normal
0.0
455
Tumor
0.0
488
Normal
0.0
365
Tumor
0.0
172
Normal
0.0
515
Tumor
0.0
366
Normal
0.0
815
Tumor
0.0
567
Tumor
0.0
716
Normal
0.0
1028
Normal
0.0
1022
Normal
0.0
1045
Tumor
0.0
186
Normal
0.0
362
Normal
0.0
518
Normal
0.0
413
Tumor
0.0
571
Tumor
0.0
162
Normal
-0.1
426
Normal
-0.1
686
Normal
-0.1
114
Normal
-0.1
714
Normal
-0.1
394
Normal
-0.1
721
Tumor
-0.1
696
Normal
-0.1
443
Tumor
-0.1
271
Tumor
-0.1
636
Normal
-0.1
926
Normal
-0.1
463
Tumor
-0.1
124
Normal
-0.1
964
Normal
-0.1
564
Normal
-0.1
866
Normal
-0.1
452
Normal
-0.1
456
Normal
-0.1
423
Tumor
-0.1
472
Normal
-0.1
917
Tumor
-0.1
913
Tumor
-0.1
212
Normal
-0.1
361
Tumor
-0.1
224
Normal
-0.1
642
Normal
-0.1
446
Normal
-0.1
262
Normal
-0.1
482
Normal
-0.1
616
Normal
-0.1
395
Tumor
-0.1
672
Normal
-0.1
628
Normal
-0.1
615
Tumor
-0.1
474
Normal
-0.1
1046
Normal
-0.1
851
Tumor
-0.1
557
Tumor
-0.1
433
Tumor
-0.1
435
Tumor
-0.1
146
Normal
-0.1
742
Normal
-0.1
745
Tumor
-0.1
546
Normal
-0.1
982
Normal
-0.2
1016
Normal
-0.2
283
Tumor
-0.2
662
Normal
-0.2
728
Normal
-0.2
188
Normal
-0.2
517
Tumor
-0.2
516
Normal
-0.2
922
Normal
-0.2
187
Tumor
-0.2
466
Normal
-0.2
434
Normal
-0.2
1027
Tumor
-0.2
428
Normal
-0.2
268
Normal
-0.2
436
Normal
-0.2
138
Normal
-0.2
148
Normal
-0.2
424
Normal
-0.2
284
Normal
-0.2
976
Normal
-0.2
978
Normal
-0.2
724
Normal
-0.2
185
Tumor
-0.2
534
Normal
-0.2
445
Tumor
-0.2
221
Tumor
-0.2
568
Normal
-0.2
125
Tumor
-0.2
858
Normal
-0.2
912
Normal
-0.2
468
Normal
-0.2
422
Normal
-0.2
342
Normal
-0.2
494
Normal
-0.2
267
Tumor
-0.2
462
Normal
-0.2
968
Normal
-0.2
956
Normal
-0.2
671
Tumor
-0.2
1032
Normal
-0.2
698
Normal
-0.2
665
Tumor
-0.2
713
Tumor
-0.2
778
Normal
-0.3
664
Normal
-0.3
137
Tumor
-0.3
464
Normal
-0.3
526
Normal
-0.3
416
Normal
-0.3
574
Normal
-0.3
756
Normal
-0.3
481
Tumor
-0.3
328
Normal
-0.3
344
Normal
-0.3
857
Tumor
-0.3
414
Normal
-0.3
111
Normal
-0.3
785
Tumor
-0.3
618
Normal
-0.3
352
Normal
-0.3
425
Tumor
-0.3
722
Normal
-0.3
258
Normal
-0.3
298
Normal
-0.3
421
Tumor
-0.3
136
Normal
-0.3
467
Tumor
-0.3
816
Normal
-0.3
723
Tumor
-0.3
147
Tumor
-0.3
916
Normal
-0.3
738
Normal
-0.3
356
Normal
-0.3
824
Normal
-0.3
278
Normal
-0.3
128
Normal
-0.4
223
Tumor
-0.4
192
Normal
-0.4
572
Normal
-0.4
358
Normal
-0.4
868
Normal
-0.4
528
Normal
-0.4
332
Normal
-0.4
272
Normal
-0.4
666
Normal
-0.4
132
Normal
-0.4
331
Tumor
-0.4
232
Normal
-0.4
142
Normal
-0.4
297
Tumor
-0.4
127
Tumor
-0.4
786
Normal
-0.4
852
Normal
-0.4
327
Tumor
-0.4
257
Tumor
-0.4
513
Tumor
-0.4
563
Tumor
-0.5
627
Tumor
-0.5
217
Tumor
-0.5
213
Tumor
-0.5
222
Normal
-0.5
648
Normal
-0.5
432
Normal
-0.5
818
Normal
-0.5
145
Tumor
-0.5
514
Normal
-0.5
312
Normal
-0.5
448
Normal
-0.5
1044
Normal
-0.6
558
Normal
-0.6
214
Normal
-0.6
196
Normal
-0.6
354
Normal
-0.6
314
Normal
-0.6
195
Tumor
-0.7
641
Tumor
-0.7
311
Tumor
-0.7
353
Tumor
-0.7
218
Normal
-0.7
573
Tumor
-0.8
191
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
