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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF7 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
15.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IRF7 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.5
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
89.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
74.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
72.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
70.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
68.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
60.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
51.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
49.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
49.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
48.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
44.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
41.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
40.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
38.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
38.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
37.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
36.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
35.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
35.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
34.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
32.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
30.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
30.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
29.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
28.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
28.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
28.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
27.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
25.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
24.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
19.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
16.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.7
467
Tumor
1.5
671
Tumor
1.5
473
Tumor
1.1
218
Normal
1.1
665
Tumor
1.1
557
Tumor
1.0
661
Tumor
1.0
395
Tumor
0.9
217
Tumor
0.9
527
Tumor
0.9
477
Tumor
0.8
113
Tumor
0.8
446
Normal
0.7
463
Tumor
0.7
554
Normal
0.7
434
Normal
0.7
471
Tumor
0.6
396
Normal
0.6
415
Tumor
0.6
553
Tumor
0.6
443
Tumor
0.6
721
Tumor
0.6
343
Tumor
0.6
1031
Tumor
0.5
195
Tumor
0.5
433
Tumor
0.5
448
Normal
0.5
647
Tumor
0.5
1021
Tumor
0.5
662
Normal
0.5
455
Tumor
0.5
258
Normal
0.5
341
Tumor
0.5
461
Tumor
0.5
327
Tumor
0.5
1028
Normal
0.5
1046
Normal
0.5
232
Normal
0.5
213
Tumor
0.4
1025
Tumor
0.4
698
Normal
0.4
1044
Normal
0.4
267
Tumor
0.4
262
Normal
0.4
451
Tumor
0.4
663
Tumor
0.4
361
Tumor
0.4
664
Normal
0.4
268
Normal
0.3
123
Tumor
0.3
574
Normal
0.3
127
Tumor
0.3
393
Tumor
0.3
488
Normal
0.3
286
Normal
0.3
722
Normal
0.3
212
Normal
0.2
352
Normal
0.2
666
Normal
0.2
284
Normal
0.2
672
Normal
0.2
344
Normal
0.2
416
Normal
0.2
261
Tumor
0.2
221
Tumor
0.2
368
Normal
0.2
228
Normal
0.2
538
Normal
0.2
376
Normal
0.2
386
Normal
0.2
391
Tumor
0.2
564
Normal
0.2
648
Normal
0.2
224
Normal
0.2
124
Normal
0.1
494
Normal
0.1
545
Tumor
0.1
713
Tumor
0.1
191
Tumor
0.1
1045
Tumor
0.1
534
Normal
0.1
125
Tumor
0.1
572
Normal
0.1
272
Normal
0.1
493
Tumor
0.1
112
Tumor
0.1
1041
Tumor
0.1
465
Tumor
0.1
354
Normal
0.1
568
Normal
0.1
685
Tumor
0.1
126
Normal
0.1
357
Tumor
0.1
571
Tumor
0.0
392
Normal
0.0
111
Normal
0.0
383
Tumor
0.0
528
Normal
0.0
223
Tumor
0.0
411
Tumor
0.0
558
Normal
0.0
214
Normal
0.0
114
Normal
0.0
498
Normal
0.0
1032
Normal
0.0
536
Normal
0.0
385
Tumor
0.0
716
Normal
0.0
474
Normal
0.0
563
Tumor
0.0
714
Normal
0.0
412
Normal
0.0
546
Normal
0.0
492
Normal
0.0
686
Normal
0.0
394
Normal
-0.1
452
Normal
-0.1
388
Normal
-0.1
283
Tumor
-0.1
387
Tumor
-0.1
211
Tumor
-0.1
447
Tumor
-0.1
358
Normal
-0.1
573
Tumor
-0.1
696
Normal
-0.1
487
Tumor
-0.1
364
Normal
-0.1
355
Tumor
-0.1
362
Normal
-0.1
1026
Normal
-0.1
466
Normal
-0.1
353
Tumor
-0.1
231
Tumor
-0.1
196
Normal
-0.1
482
Normal
-0.1
436
Normal
-0.2
468
Normal
-0.2
462
Normal
-0.2
481
Tumor
-0.2
1043
Tumor
-0.2
384
Normal
-0.2
456
Normal
-0.2
431
Tumor
-0.2
257
Tumor
-0.2
366
Normal
-0.2
128
Normal
-0.2
464
Normal
-0.2
567
Tumor
-0.2
478
Normal
-0.3
497
Tumor
-0.3
192
Normal
-0.3
472
Normal
-0.3
535
Tumor
-0.3
444
Normal
-0.3
222
Normal
-0.3
491
Tumor
-0.3
484
Normal
-0.3
697
Tumor
-0.4
328
Normal
-0.4
365
Tumor
-0.4
356
Normal
-0.4
375
Tumor
-0.4
342
Normal
-0.5
367
Tumor
-0.5
271
Tumor
-0.5
285
Tumor
-0.5
445
Tumor
-0.5
715
Tumor
-0.5
483
Tumor
-0.6
695
Tumor
-0.6
435
Tumor
-0.7
1022
Normal
-0.7
227
Tumor
-0.7
432
Normal
-0.7
363
Tumor
-0.9
351
Tumor
-1.0
1042
Normal
-1.1
537
Tumor
-1.2
1027
Tumor
-2.0
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
957
Tumor
N/A
958
Normal
N/A
161
Tumor
N/A
162
Normal
N/A
963
Tumor
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
