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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FAAP100 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
32.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
18.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
17.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
15.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
6.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.0
391
Tumor
1.0
387
Tumor
0.9
388
Normal
0.9
394
Normal
0.9
186
Normal
0.8
425
Tumor
0.8
396
Normal
0.8
386
Normal
0.8
428
Normal
0.8
286
Normal
0.8
413
Tumor
0.8
342
Normal
0.7
957
Tumor
0.7
422
Normal
0.7
426
Normal
0.7
188
Normal
0.7
354
Normal
0.7
423
Tumor
0.7
358
Normal
0.6
222
Normal
0.6
171
Tumor
0.6
414
Normal
0.6
162
Normal
0.6
745
Tumor
0.6
172
Normal
0.6
392
Normal
0.6
964
Normal
0.6
536
Normal
0.6
965
Tumor
0.5
427
Tumor
0.5
217
Tumor
0.5
148
Normal
0.5
385
Tumor
0.5
356
Normal
0.5
221
Tumor
0.5
435
Tumor
0.5
218
Normal
0.5
421
Tumor
0.5
393
Tumor
0.4
432
Normal
0.4
446
Normal
0.4
353
Tumor
0.4
196
Normal
0.4
351
Tumor
0.4
436
Normal
0.4
443
Tumor
0.4
187
Tumor
0.4
958
Normal
0.4
352
Normal
0.4
444
Normal
0.4
976
Normal
0.4
212
Normal
0.4
445
Tumor
0.4
161
Tumor
0.4
433
Tumor
0.4
192
Normal
0.3
434
Normal
0.3
424
Normal
0.3
147
Tumor
0.3
416
Normal
0.3
214
Normal
0.3
228
Normal
0.3
981
Tumor
0.3
185
Tumor
0.2
966
Normal
0.2
777
Tumor
0.2
272
Normal
0.2
395
Tumor
0.2
1046
Normal
0.2
224
Normal
0.2
268
Normal
0.2
814
Normal
0.2
344
Normal
0.2
1043
Tumor
0.2
968
Normal
0.2
755
Tumor
0.2
195
Tumor
0.1
412
Normal
0.1
967
Tumor
0.1
865
Tumor
0.1
284
Normal
0.1
431
Tumor
0.1
778
Normal
0.1
746
Normal
0.1
756
Normal
0.0
357
Tumor
0.0
546
Normal
0.0
213
Tumor
0.0
447
Tumor
0.0
343
Tumor
0.0
261
Tumor
0.0
271
Tumor
0.0
864
Normal
0.0
191
Tumor
0.0
554
Normal
0.0
341
Tumor
0.0
877
Tumor
0.0
868
Normal
0.0
534
Normal
-0.1
866
Normal
-0.1
873
Tumor
-0.1
553
Tumor
-0.1
327
Tumor
-0.1
545
Tumor
-0.1
1013
Tumor
-0.1
785
Tumor
-0.1
881
Tumor
-0.1
528
Normal
-0.1
258
Normal
-0.1
874
Normal
-0.1
698
Normal
-0.2
862
Normal
-0.2
813
Tumor
-0.2
283
Tumor
-0.2
951
Tumor
-0.2
527
Tumor
-0.2
786
Normal
-0.2
232
Normal
-0.2
983
Tumor
-0.2
526
Normal
-0.2
364
Normal
-0.2
482
Normal
-0.2
1044
Normal
-0.2
535
Tumor
-0.2
861
Tumor
-0.2
223
Tumor
-0.2
227
Tumor
-0.2
975
Tumor
-0.2
328
Normal
-0.3
883
Tumor
-0.3
538
Normal
-0.3
963
Tumor
-0.3
411
Tumor
-0.3
878
Normal
-0.3
262
Normal
-0.3
937
Tumor
-0.3
982
Normal
-0.3
1045
Tumor
-0.3
697
Tumor
-0.3
285
Tumor
-0.3
513
Tumor
-0.3
477
Tumor
-0.3
537
Tumor
-0.4
1032
Normal
-0.4
478
Normal
-0.4
481
Tumor
-0.4
462
Normal
-0.4
448
Normal
-0.4
863
Tumor
-0.4
267
Tumor
-0.4
867
Tumor
-0.4
257
Tumor
-0.4
473
Tumor
-0.4
1026
Normal
-0.5
472
Normal
-0.5
913
Tumor
-0.5
1014
Normal
-0.5
515
Tumor
-0.5
211
Tumor
-0.5
984
Normal
-0.5
514
Normal
-0.5
474
Normal
-0.5
977
Tumor
-0.6
231
Tumor
-0.6
518
Normal
-0.6
1028
Normal
-0.6
471
Tumor
-0.6
1015
Tumor
-0.6
461
Tumor
-0.6
912
Normal
-0.6
911
Tumor
-0.6
882
Normal
-0.6
1042
Normal
-0.7
516
Normal
-0.7
956
Normal
-0.7
884
Normal
-0.7
525
Tumor
-0.8
355
Tumor
-0.8
415
Tumor
-0.8
1022
Normal
-0.8
1025
Tumor
-0.8
953
Tumor
-0.8
944
Normal
-0.8
955
Tumor
-0.8
938
Normal
-0.9
1016
Normal
-0.9
524
Normal
-0.9
954
Normal
-0.9
363
Tumor
-0.9
517
Tumor
-1.0
943
Tumor
-1.0
1031
Tumor
-1.0
952
Normal
-1.0
523
Tumor
-1.1
978
Normal
-1.1
914
Normal
-1.1
1021
Tumor
-1.3
1041
Tumor
-1.3
1027
Tumor
-1.3
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
483
Tumor
N/A
484
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
