MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.7 nTPM
HPA Brain:18.9 nTPM
GTEx:1.7 nTPM
FANTOM5:12.7 Scaled Tags Per Million
Mouse:4.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2219 Male, age 76, both hemispheres 17.4
1833 Male, age 53, unknown 14.7
2019 Male, age 18, unknown 14.2
1827 Male, age 72, unknown 12.6
2411 Female, age 72, unknown 12.1
2586 Male, age 75, left hemisphere 10.1
1870 Female, age 42, unknown 9.8
1830 Male, age 51, unknown 9.2
2666 Male, age 74, left hemisphere 8.7
2828 Female, age 72, unknown 7.9
Dorsal raphe nucleus
nTPM: 12.4
1828 Male, age 53, unknown 13.5
2016 Female, age 72, unknown 13.4
2298 Female, age 72, unknown 13.4
2047 Male, age 72, unknown 11.5
2750 Male, age 76, both hemispheres 10.4
Inferior colliculus
nTPM: 13.7
1848 Female, age 42, unknown 17.4
2849 Male, age 72, unknown 15.3
2097 Female, age 72, unknown 11.2
1890 Male, age 53, unknown 11.1
Median raphe nucleus
nTPM: 12.4
2220 Male, age 76, midline 12.4
Periaquaductal grey, anterior
nTPM: 10.2
2502 Female, age 75, unknown 11.8
1795 Male, age 51, unknown 11.2
1947 Male, age 18, unknown 7.7
Periaquaductal grey, dorsal
nTPM: 14.4
1840 Male, age 53, unknown 19.1
1831 Male, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 12.8
2464 Female, age 72, unknown 11.4
Periaquaductal grey, lateral
nTPM: 13.2
2140 Male, age 76, both hemispheres 14.3
2272 Male, age 74, both hemispheres 12.9
2053 Male, age 18, unknown 12.5
Pretectal area
nTPM: 13.3
2007 Male, age 72, unknown 18.0
1817 Female, age 42, unknown 14.9
2407 Male, age 75, both hemispheres 14.5
1815 Male, age 53, unknown 13.9
1944 Female, age 72, unknown 13.9
2316 Male, age 76, right hemisphere 13.3
1816 Male, age 51, unknown 13.1
2273 Male, age 74, both hemispheres 12.8
2825 Male, age 18, unknown 12.6
2224 Female, age 72, unknown 12.4
2667 Female, age 75, unknown 7.1
Red nucleus
nTPM: 10.1
2725 Female, age 75, unknown 16.3
1821 Female, age 72, unknown 13.4
2785 Male, age 18, unknown 13.2
2584 Male, age 75, left hemisphere 11.0
2769 Male, age 72, unknown 10.4
2227 Male, age 72, unknown 10.0
2503 Female, age 72, unknown 9.7
2588 Male, age 74, left hemisphere 8.2
1954 Female, age 42, unknown 8.0
2823 Male, age 76, right hemisphere 7.3
1865 Male, age 51, unknown 7.0
1904 Male, age 53, unknown 6.8
Substantia nigra
nTPM: 18.9
1916 Female, age 42, unknown 25.1
2590 Female, age 75, unknown 22.9
2241 Male, age 72, unknown 21.0
1851 Male, age 51, unknown 19.0
2409 Female, age 72, unknown 18.1
2665 Male, age 74, both hemispheres 18.1
2699 Male, age 18, unknown 17.2
2583 Male, age 75, right hemisphere 17.1
1889 Female, age 72, unknown 16.8
1941 Male, age 53, unknown 14.2
Superior colliculus
nTPM: 10.5
2664 Male, age 75, both hemispheres 15.2
1839 Male, age 51, unknown 14.0
1895 Male, age 76, right hemisphere 13.2
1796 Male, age 53, unknown 12.9
2587 Male, age 74, left hemisphere 11.8
2087 Female, age 72, unknown 11.7
2261 Male, age 18, unknown 9.1
2668 Female, age 75, unknown 7.4
1913 Female, age 42, unknown 5.0
1995 Male, age 72, unknown 4.8
Ventral tegmental area
nTPM: 15.4
1915 Female, age 42, unknown 18.6
2218 Male, age 76, both hemispheres 18.6
2410 Female, age 72, unknown 17.7
1942 Male, age 51, unknown 15.9
2021 Male, age 53, unknown 12.7
2223 Female, age 72, unknown 9.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.7
Samples: 139

Max nTPM: 5.5
Min nTPM: 0.2
Std nTPM: 0.9
Median nTPM: 1.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 5.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 5.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 3.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 3.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 3.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 3.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 3.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 2.9
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 2.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.7
FF:10158-103A5 76 years, female 12.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.0
Samples: 4

Max nTPM: 4.3
Min nTPM: 3.3
Sample A Male 3.3
Sample B Male 4.2
Sample C Female 4.3
Sample D Female 4.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69530756 Antisense, RP_050421_04_E04, Mouse strain C57BL/6J (56 days, male) 0.2
73520968 Antisense, RP_051017_04_E08, Mouse strain C57BL/6J (56 days, male) 0.0

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