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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP140L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
18.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
14.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SP140L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
113
Tumor
1.3
557
Tumor
1.1
1015
Tumor
1.0
383
Tumor
0.7
135
Tumor
0.7
211
Tumor
0.7
213
Tumor
0.6
724
Normal
0.6
415
Tumor
0.6
867
Tumor
0.6
493
Tumor
0.6
455
Tumor
0.6
434
Normal
0.6
487
Tumor
0.6
262
Normal
0.6
311
Tumor
0.5
492
Normal
0.5
327
Tumor
0.5
563
Tumor
0.5
187
Tumor
0.5
126
Normal
0.5
141
Tumor
0.5
343
Tumor
0.4
951
Tumor
0.4
268
Normal
0.4
461
Tumor
0.4
627
Tumor
0.4
963
Tumor
0.4
188
Normal
0.4
861
Tumor
0.4
491
Tumor
0.4
525
Tumor
0.4
195
Tumor
0.4
344
Normal
0.4
261
Tumor
0.4
913
Tumor
0.4
814
Normal
0.4
641
Tumor
0.4
283
Tumor
0.4
384
Normal
0.4
191
Tumor
0.4
883
Tumor
0.4
925
Tumor
0.4
884
Normal
0.3
573
Tumor
0.3
917
Tumor
0.3
416
Normal
0.3
978
Normal
0.3
375
Tumor
0.3
313
Tumor
0.3
355
Tumor
0.3
915
Tumor
0.3
218
Normal
0.3
395
Tumor
0.3
662
Normal
0.3
137
Tumor
0.3
966
Normal
0.3
628
Normal
0.3
433
Tumor
0.3
127
Tumor
0.3
524
Normal
0.3
451
Tumor
0.3
467
Tumor
0.3
497
Tumor
0.3
685
Tumor
0.3
422
Normal
0.3
423
Tumor
0.3
471
Tumor
0.3
257
Tumor
0.2
217
Tumor
0.2
365
Tumor
0.2
955
Tumor
0.2
185
Tumor
0.2
721
Tumor
0.2
386
Normal
0.2
224
Normal
0.2
421
Tumor
0.2
444
Normal
0.2
665
Tumor
0.2
427
Tumor
0.2
857
Tumor
0.2
352
Normal
0.2
517
Tumor
0.2
223
Tumor
0.2
297
Tumor
0.2
873
Tumor
0.2
953
Tumor
0.2
413
Tumor
0.2
396
Normal
0.2
957
Tumor
0.2
943
Tumor
0.2
558
Normal
0.2
1031
Tumor
0.2
538
Normal
0.2
192
Normal
0.1
515
Tumor
0.1
138
Normal
0.1
111
Normal
0.1
358
Normal
0.1
142
Normal
0.1
161
Tumor
0.1
232
Normal
0.1
357
Tumor
0.1
362
Normal
0.1
465
Tumor
0.1
412
Normal
0.1
686
Normal
0.1
428
Normal
0.1
272
Normal
0.1
424
Normal
0.1
136
Normal
0.1
114
Normal
0.1
364
Normal
0.1
414
Normal
0.1
498
Normal
0.1
146
Normal
0.1
124
Normal
0.1
483
Tumor
0.1
574
Normal
0.1
123
Tumor
0.1
981
Tumor
0.1
128
Normal
0.1
672
Normal
0.1
666
Normal
0.1
911
Tumor
0.1
778
Normal
0.1
916
Normal
0.1
664
Normal
0.1
446
Normal
0.1
755
Tumor
0.0
214
Normal
0.0
1028
Normal
0.0
477
Tumor
0.0
456
Normal
0.0
366
Normal
0.0
1044
Normal
0.0
258
Normal
0.0
977
Tumor
0.0
443
Tumor
0.0
952
Normal
0.0
328
Normal
0.0
376
Normal
0.0
426
Normal
0.0
636
Normal
0.0
533
Tumor
0.0
741
Tumor
0.0
858
Normal
0.0
536
Normal
0.0
494
Normal
0.0
356
Normal
0.0
914
Normal
0.0
516
Normal
0.0
523
Tumor
0.0
212
Normal
0.0
488
Normal
0.0
964
Normal
0.0
616
Normal
0.0
572
Normal
0.0
568
Normal
0.0
466
Normal
0.0
145
Tumor
0.0
878
Normal
0.0
445
Tumor
0.0
528
Normal
0.0
661
Tumor
0.0
452
Normal
0.0
554
Normal
0.0
956
Normal
0.0
468
Normal
0.0
464
Normal
0.0
1021
Tumor
0.0
965
Tumor
0.0
527
Tumor
0.0
1013
Tumor
-0.1
368
Normal
-0.1
728
Normal
-0.1
387
Tumor
-0.1
785
Tumor
-0.1
881
Tumor
-0.1
715
Tumor
-0.1
786
Normal
-0.1
982
Normal
-0.1
354
Normal
-0.1
436
Normal
-0.1
271
Tumor
-0.1
975
Tumor
-0.1
514
Normal
-0.1
852
Normal
-0.1
642
Normal
-0.1
874
Normal
-0.1
1014
Normal
-0.1
284
Normal
-0.1
756
Normal
-0.1
125
Tumor
-0.1
984
Normal
-0.1
286
Normal
-0.1
388
Normal
-0.1
1046
Normal
-0.1
1045
Tumor
-0.1
777
Tumor
-0.1
813
Tumor
-0.1
518
Normal
-0.1
392
Normal
-0.1
868
Normal
-0.1
228
Normal
-0.1
367
Tumor
-0.1
738
Normal
-0.1
824
Normal
-0.1
526
Normal
-0.1
172
Normal
-0.1
312
Normal
-0.1
816
Normal
-0.1
432
Normal
-0.1
648
Normal
-0.1
976
Normal
-0.1
534
Normal
-0.1
448
Normal
-0.1
723
Tumor
-0.1
314
Normal
-0.1
863
Tumor
-0.1
968
Normal
-0.1
411
Tumor
-0.1
353
Tumor
-0.1
923
Tumor
-0.1
746
Normal
-0.1
361
Tumor
-0.1
132
Normal
-0.1
231
Tumor
-0.2
1042
Normal
-0.2
851
Tumor
-0.2
817
Tumor
-0.2
882
Normal
-0.2
148
Normal
-0.2
818
Normal
-0.2
1026
Normal
-0.2
484
Normal
-0.2
478
Normal
-0.2
1027
Tumor
-0.2
474
Normal
-0.2
462
Normal
-0.2
1016
Normal
-0.2
618
Normal
-0.2
162
Normal
-0.2
393
Tumor
-0.2
222
Normal
-0.2
535
Tumor
-0.2
298
Normal
-0.2
186
Normal
-0.2
221
Tumor
-0.2
912
Normal
-0.2
394
Normal
-0.2
866
Normal
-0.2
918
Normal
-0.2
564
Normal
-0.2
553
Tumor
-0.2
431
Tumor
-0.2
385
Tumor
-0.2
716
Normal
-0.2
615
Tumor
-0.2
722
Normal
-0.2
924
Normal
-0.2
958
Normal
-0.2
864
Normal
-0.2
696
Normal
-0.2
196
Normal
-0.2
698
Normal
-0.2
823
Tumor
-0.2
742
Normal
-0.2
342
Normal
-0.3
1041
Tumor
-0.3
112
Tumor
-0.3
391
Tumor
-0.3
1022
Normal
-0.3
954
Normal
-0.3
745
Tumor
-0.3
1032
Normal
-0.3
695
Tumor
-0.3
922
Normal
-0.3
714
Normal
-0.3
617
Tumor
-0.3
744
Normal
-0.3
926
Normal
-0.3
865
Tumor
-0.3
546
Normal
-0.3
472
Normal
-0.3
513
Tumor
-0.3
435
Tumor
-0.3
481
Tumor
-0.3
663
Tumor
-0.3
267
Tumor
-0.3
937
Tumor
-0.3
545
Tumor
-0.4
921
Tumor
-0.4
447
Tumor
-0.4
967
Tumor
-0.4
425
Tumor
-0.4
277
Tumor
-0.4
944
Normal
-0.4
278
Normal
-0.4
713
Tumor
-0.4
332
Normal
-0.5
171
Tumor
-0.5
147
Tumor
-0.5
862
Normal
-0.5
482
Normal
-0.5
737
Tumor
-0.5
635
Tumor
-0.5
727
Tumor
-0.5
463
Tumor
-0.6
537
Tumor
-0.6
567
Tumor
-0.6
285
Tumor
-0.6
647
Tumor
-0.6
938
Normal
-0.6
983
Tumor
-0.6
363
Tumor
-0.7
1043
Tumor
-0.7
571
Tumor
-0.7
473
Tumor
-0.7
1025
Tumor
-0.7
227
Tumor
-0.8
697
Tumor
-0.9
341
Tumor
-0.9
877
Tumor
-0.9
815
Tumor
-1.0
671
Tumor
-1.0
331
Tumor
-1.1
351
Tumor
-1.7
131
Tumor
-2.0
743
Tumor
-2.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.