HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:41.3 nTPM
HPA Brain:68.9 nTPM
GTEx:41.3 nTPM
FANTOM5:30.8 Scaled Tags Per Million
Pig:36.8 nTPM
Mouse:17.3 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA019858
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 68.9
Sample id Sample description nTPM
Hippocampus
nTPM: 68.9
2529 Female, age 94, left hemisphere 74.3
1898 Male, age 80, left hemisphere 73.3
2621 Female, age 67, right hemisphere 71.6
2148 Female, age 91, left hemisphere 69.9
1911 Female, age 85, right hemisphere 62.9
1855 Male, age 76, left hemisphere 61.6
Dentate gyrus
nTPM: 59.7
2530 Female, age 94, left hemisphere 66.2
2531 Female, age 67, both hemispheres 65.8
1927 Female, age 91, both hemispheres 58.0
2528 Male, age 74, both hemispheres 57.4
2246 Female, age 85, both hemispheres 55.9
2010 Male, age 76, both hemispheres 54.7
Entorhinal gyrus
nTPM: 60.8
2613 Female, age 94, left hemisphere 65.0
2764 Male, age 80, right hemisphere 64.5
2686 Male, age 75, right hemisphere 62.2
1787 Male, age 76, left hemisphere 62.1
1938 Female, age 85, left hemisphere 58.2
2117 Female, age 91, right hemisphere 52.6
Hippocampus, CA1
nTPM: 60.5
2749 Male, age 80, left hemisphere 78.2
1873 Female, age 85, both hemispheres 61.3
2527 Male, age 74, both hemispheres 57.5
2082 Female, age 91, right hemisphere 57.2
2045 Male, age 76, both hemispheres 48.1
Hippocampus, CA2
nTPM: 59.2
2437 Female, age 94, left hemisphere 64.9
1963 Male, age 80, left hemisphere 63.2
1892 Male, age 76, both hemispheres 60.9
1940 Female, age 85, left hemisphere 58.8
2113 Female, age 91, right hemisphere 58.3
2249 Male, age 74, both hemispheres 49.1
Hippocampus, CA3
nTPM: 68.3
2861 Female, age 67, both hemispheres 98.1
2137 Male, age 80, left hemisphere 75.0
2620 Female, age 94, left hemisphere 71.3
1867 Male, age 76, both hemispheres 60.0
2436 Male, age 74, both hemispheres 53.1
1891 Female, age 85, both hemispheres 52.4
Parahippocampal cortex
nTPM: 57.9
2622 Female, age 67, right hemisphere 75.1
2245 Female, age 91, both hemispheres 68.6
2692 Male, age 74, both hemispheres 61.4
1933 Female, age 85, both hemispheres 60.1
2532 Female, age 72, left hemisphere 56.9
2250 Female, age 67, right hemisphere 52.3
1850 Male, age 80, both hemispheres 52.2
2018 Male, age 76, both hemispheres 51.5
1990 Female, age 91, right hemisphere 50.9
2693 Female, age 94, both hemispheres 49.8
Perirhinal gyrus
nTPM: 53.6
1794 Male, age 80, right hemisphere 60.6
1847 Female, age 91, left hemisphere 57.6
1841 Female, age 85, right hemisphere 50.8
2848 Male, age 76, right hemisphere 49.7
2521 Female, age 94, right hemisphere 49.3
Subiculum
nTPM: 57.5
2619 Male, age 74, both hemispheres 62.5
2438 Female, age 94, left hemisphere 61.9
2729 Female, age 91, right hemisphere 58.5
1901 Male, age 80, both hemispheres 56.2
2042 Male, age 76, both hemispheres 53.6
1977 Female, age 85, both hemispheres 52.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 41.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 41.3
Samples: 255

Max nTPM: 152.3
Min nTPM: 14.4
Std nTPM: 14.7
Median nTPM: 39.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 152.3
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 88.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 86.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 86.8
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 82.5
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 80.1
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 76.6
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 70.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 68.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 67.8
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 67.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.8
FF:10153-102I9 76 years, female 40.9
FF:10169-103B7 60 years, female 20.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 36.8
Pig sample Sample description nTPM
Subiculum
nTPM: 31.0
Samples: 4

Max nTPM: 38.3
Min nTPM: 27.4
Sample A Female 38.3
Sample B Female 27.4
Sample C Male 29.8
Sample D Male 28.6
Dorsal hippocampus
nTPM: 30.5
Samples: 4

Max nTPM: 37.5
Min nTPM: 25.4
Sample A Female 37.5
Sample B Female 26.9
Sample C Male 32.3
Sample D Male 25.4
Entorhinal cortex
nTPM: 36.8
Samples: 4

Max nTPM: 42.8
Min nTPM: 34.1
Sample A Female 36.0
Sample B Female 34.1
Sample C Male 42.8
Sample D Male 34.4
Ventral hippocampus
nTPM: 31.4
Samples: 4

Max nTPM: 41.5
Min nTPM: 21.6
Sample A Female 31.5
Sample B Female 21.6
Sample C Male 41.5
Sample D Male 31.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 17.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 17.3
Samples: 4

Max nTPM: 19.4
Min nTPM: 15.6
Sample A Male 18.0
Sample B Male 16.3
Sample C Female 15.6
Sample D Female 19.4
Hippocampal formation
nTPM: 16.4
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.4
Sample A Male 14.7
Sample B Male 17.9
Sample C Female 14.4
Sample D Female 18.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.5
74509597 Antisense, RP_060208_01_A11, Mouse strain C57BL/6J (56 days, male) 1.5

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