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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
169
Samples
Sample
Description
TPM
TCGA-XF-AAMH-01A
80 years, male, white, stage:Stage IV, dead, 344 days
4.5
TCGA-BT-A20W-01A
71 years, male, white, stage:Stage II, dead, 254 days
0.5
TCGA-XF-AAN8-01A
74 years, female, white, stage:Stage III, dead, 118 days
0.3
TCGA-4Z-AA82-01A
59 years, male, black or african american, stage:Stage IV, dead, 1556 days
0.3
TCGA-G2-A2ES-01A
85 years, male, white, stage:Stage II, dead, 1004 days
0.2
TCGA-FD-A3B4-01A
55 years, female, black or african american, stage:Stage III, dead, 510 days
0.1
TCGA-DK-AA6Q-01A
61 years, female, white, stage:Stage IV, dead, 413 days
0.1
TCGA-ZF-A9R0-01A
82 years, male, white, stage:Stage III, dead, 680 days
0.1
TCGA-FJ-A3ZE-01A
65 years, male, white, stage:Stage IV, dead, 324 days
0.1
TCGA-FD-A6TG-01A
73 years, male, white, stage:Stage IV, dead, 93 days
0.1
TCGA-FD-A6TF-01A
80 years, female, white, stage:Stage IV, dead, 69 days
0.1
TCGA-E7-A97P-01A
73 years, male, asian, stage:Stage II, dead, 437 days
0.1
TCGA-CU-A0YR-01A
83 years, male, white, stage:Stage IV, dead, 460 days
0.1
TCGA-FD-A3B7-01A
66 years, male, black or african american, stage:Stage III, dead, 122 days
0.1
TCGA-BT-A2LD-01A
78 years, female, white, stage:Stage IV, dead, 623 days
0.1
TCGA-CU-A0YO-01A
84 years, male, white, stage:Stage IV, dead, 149 days
0.1
TCGA-4Z-AA7N-01A
65 years, male, white, stage:Stage III, dead, 1367 days
0.0
TCGA-DK-A1A5-01A
79 years, male, white, stage:Stage II, dead, 65 days
0.0
TCGA-XF-AAML-01A
75 years, male, white, stage:Stage II, dead, 232 days
0.0
TCGA-E5-A4TZ-01A
64 years, male, white, stage:Stage IV, dead, 467 days
0.0
TCGA-GU-A42Q-01A
67 years, male, white, stage:Stage III, dead, 344 days
0.0
TCGA-BT-A20V-01A
59 years, female, black or african american, stage:Stage IV, dead, 154 days
0.0
TCGA-DK-A1AB-01A
74 years, female, white, stage:Stage IV, dead, 508 days
0.0
TCGA-BT-A3PH-01A
76 years, male, white, stage:Stage IV, dead, 142 days
0.0
TCGA-DK-A3IU-01A
58 years, male, white, stage:Stage II, dead, 706 days
0.0
TCGA-FD-A3SJ-01A
59 years, male, white, stage:Stage IV, dead, 739 days
0.0
TCGA-DK-AA6W-01A
78 years, male, white, stage:Stage II, dead, 415 days
0.0
TCGA-XF-A9SZ-01A
79 years, male, white, stage:Stage IV, dead, 859 days
0.0
TCGA-K4-A4AC-01A
83 years, male, white, stage:Stage II, dead, 278 days
0.0
TCGA-ZF-A9RN-01A
67 years, female, white, stage:Stage III, dead, 615 days
0.0
TCGA-BL-A13J-01A
65 years, male, white, stage:Stage IV, dead, 81 days
0.0
TCGA-XF-A8HH-01A
61 years, female, white, stage:Stage IV, dead, 57 days
0.0
TCGA-FD-A5C0-01A
61 years, male, white, stage:Stage IV, dead, 550 days
0.0
TCGA-XF-A9SP-01A
59 years, male, white, stage:Stage III, dead, 454 days
0.0
TCGA-FD-A5BX-01A
82 years, male, white, stage:Stage IV, dead, 173 days
0.0
TCGA-GU-A42R-01A
68 years, male, white, stage:Stage IV, dead, 577 days
0.0
TCGA-ZF-AA56-01A
79 years, female, white, stage:Stage III, dead, 259 days
0.0
TCGA-4Z-AA7Q-01A
79 years, male, white, stage:Stage III, dead, 510 days
0.0
TCGA-XF-AAMT-01A
75 years, female, white, stage:Stage IV, dead, 90 days
0.0
TCGA-GU-A762-01A
87 years, male, white, stage:Stage IV, dead, 232 days
0.0
TCGA-XF-A8HG-01A
69 years, male, white, stage:Stage III, dead, 467 days
0.0
TCGA-BL-A3JM-01A
62 years, male, white, stage:Stage III, dead, 205 days
0.0
TCGA-XF-AAN0-01A
68 years, male, white, stage:Stage IV, dead, 1718 days
0.0
TCGA-FD-A3B5-01A
86 years, male, black or african american, stage:Stage IV, dead, 272 days
0.0
TCGA-CF-A47T-01A
58 years, female, asian, stage:Stage II, dead, 385 days
0.0
TCGA-BT-A20X-01A
56 years, male, white, stage:Stage IV, dead, 251 days
0.0
TCGA-C4-A0F7-01A
77 years, male, stage:Stage IV, dead, 62 days
0.0
TCGA-GC-A3I6-01A
45 years, male, white, stage:Stage III, dead, 630 days
0.0
TCGA-UY-A78K-01A
60 years, male, white, stage:Stage IV, dead, 536 days
0.0
TCGA-GC-A3BM-01A
70 years, male, white, stage:Stage II, dead, 651 days
0.0
TCGA-XF-A8HI-01A
57 years, female, white, stage:Stage IV, dead, 544 days
0.0
TCGA-DK-A1A3-01A
60 years, male, white, stage:Stage IV, dead, 665 days
0.0
TCGA-GV-A3QF-01A
79 years, male, white, stage:Stage IV, dead, 617 days
0.0
TCGA-DK-A3X2-01A
85 years, male, white, stage:Stage IV, dead, 547 days
0.0
TCGA-BT-A20P-01A
81 years, female, white, stage:Stage III, dead, 544 days
0.0
TCGA-DK-A3IQ-01A
74 years, male, white, stage:Stage III, dead, 539 days
0.0
TCGA-CF-A9FL-01A
85 years, male, asian, stage:Stage III, dead, 565 days
0.0
TCGA-FD-A3SR-01A
68 years, male, white, stage:Stage IV, dead, 602 days
0.0
TCGA-ZF-AA4T-01A
65 years, male, white, stage:Stage IV, dead, 599 days
0.0
TCGA-BT-A20Q-01A
73 years, male, white, stage:Stage IV, dead, 593 days
0.0
TCGA-ZF-AA54-01A
71 years, male, white, stage:Stage III, dead, 590 days
0.0
TCGA-BT-A20J-01A
75 years, male, white, stage:Stage II, dead, 579 days
0.0
TCGA-FD-A3SM-01A
70 years, male, white, stage:Stage IV, dead, 547 days
0.0
TCGA-XF-A9T2-01A
54 years, male, white, stage:Stage III, dead, 575 days
0.0
TCGA-XF-AAN7-01A
60 years, male, white, stage:Stage IV, dead, 565 days
0.0
TCGA-G2-A3IE-01A
51 years, male, white, stage:Stage II, dead, 612 days
0.0
TCGA-UY-A78N-01A
80 years, male, white, stage:Stage IV, dead, 2641 days
0.0
TCGA-XF-A8HF-01A
80 years, male, white, stage:Stage III, dead, 2954 days
0.0
TCGA-FD-A3B6-01A
75 years, male, white, stage:Stage II, dead, 1005 days
0.0
TCGA-XF-A9SL-01A
69 years, male, white, stage:Stage IV, dead, 2020 days
0.0
TCGA-XF-A9SH-01A
65 years, female, asian, stage:Stage II, dead, 1971 days
0.0
TCGA-XF-AAN2-01A
73 years, male, white, stage:Stage II, dead, 1869 days
0.0
TCGA-G2-A2EO-01A
69 years, male, white, stage:Stage III, dead, 1804 days
0.0
TCGA-XF-AAMJ-01A
70 years, male, asian, stage:Stage III, dead, 1670 days
0.0
TCGA-FD-A3SQ-01A
62 years, male, white, stage:Stage IV, dead, 1423 days
0.0
TCGA-DK-A2HX-01A
80 years, female, white, stage:Stage IV, dead, 1420 days
0.0
TCGA-XF-AAMZ-01A
81 years, female, white, stage:Stage IV, dead, 1348 days
0.0
TCGA-4Z-AA81-01A
80 years, male, white, stage:Stage II, dead, 1270 days
0.0
TCGA-DK-AA6L-01A
48 years, male, white, stage:Stage IV, dead, 1163 days
0.0
TCGA-ZF-AA52-01A
70 years, male, white, stage:Stage III, dead, 1077 days
0.0
TCGA-4Z-AA7S-01A
66 years, male, black or african american, stage:Stage III, dead, 1064 days
0.0
TCGA-ZF-AA4R-01A
67 years, male, white, stage:Stage IV, dead, 1036 days
0.0
TCGA-SY-A9G0-01A
82 years, male, white, stage:Stage IV, dead, 1008 days
0.0
TCGA-FD-A3B3-01A
74 years, female, white, stage:Stage III, dead, 974 days
0.0
TCGA-FD-A3N5-01A
69 years, male, black or african american, stage:Stage II, dead, 685 days
0.0
TCGA-G2-A2EL-01A
77 years, male, white, stage:Stage II, dead, 819 days
0.0
TCGA-UY-A78M-01A
81 years, female, asian, stage:Stage IV, dead, 690 days
0.0
TCGA-G2-A2EC-01A
58 years, female, black or african american, stage:Stage II, dead, 696 days
0.0
TCGA-FD-A3SL-01A
60 years, male, white, stage:Stage IV, dead, 712 days
0.0
TCGA-XF-A9SX-01A
63 years, female, white, stage:Stage IV, dead, 719 days
0.0
TCGA-2F-A9KO-01A
63 years, male, white, stage:Stage IV, dead, 734 days
0.0
TCGA-BT-A20N-01A
72 years, male, stage:Stage III, dead, 795 days
0.0
TCGA-5N-A9KM-01A
73 years, female, white, stage:Stage III, dead, 530 days
0.0
TCGA-ZF-A9R3-01A
53 years, female, white, stage:Stage II, dead, 949 days
0.0
TCGA-XF-AAN4-01A
77 years, female, white, stage:Stage III, dead, 823 days
0.0
TCGA-XF-AAME-01A
64 years, female, white, stage:Stage II, dead, 2828 days
0.0
TCGA-FD-A5BZ-01A
77 years, female, white, stage:Stage IV, dead, 835 days
0.0
TCGA-ZF-A9R9-01A
58 years, male, white, stage:Stage IV, dead, 864 days
0.0
TCGA-E7-A3X6-01A
70 years, male, white, stage:Stage II, dead, 904 days
0.0
TCGA-XF-AAN1-01A
75 years, female, stage:Stage III, dead, 941 days
0.0
TCGA-E7-A541-01A
66 years, male, white, stage:Stage II, dead, 778 days
0.0
TCGA-4Z-AA80-01A
73 years, male, white, stage:Stage II, dead, 19 days
0.0
TCGA-4Z-AA7R-01A
73 years, male, black or african american, stage:Stage IV, dead, 522 days
0.0
TCGA-FD-A62P-01A
76 years, male, white, stage:Stage II, dead, 191 days
0.0
TCGA-GV-A3QH-01A
67 years, male, white, stage:Stage II, dead, 258 days
0.0
TCGA-2F-A9KW-01A
67 years, female, white, stage:Stage III, dead, 254 days
0.0
TCGA-XF-AAMW-01A
79 years, female, white, stage:Stage IV, dead, 253 days
0.0
TCGA-DK-A3IN-01A
72 years, male, white, stage:Stage III, dead, 250 days
0.0
TCGA-DK-A3IM-01A
76 years, male, white, stage:Stage III, dead, 248 days
0.0
TCGA-DK-A2I2-01A
63 years, female, white, stage:Stage IV, dead, 237 days
0.0
TCGA-BL-A13I-01A
57 years, female, white, stage:Stage III, dead, 223 days
0.0
TCGA-G2-A3IB-01A
66 years, male, black or african american, stage:Stage II, dead, 220 days
0.0
TCGA-FD-A62O-01A
74 years, male, white, stage:Stage IV, dead, 216 days
0.0
TCGA-GU-AATQ-01A
68 years, male, white, stage:Stage III, dead, 213 days
0.0
TCGA-G2-AA3C-01A
66 years, male, white, stage:Stage IV, dead, 211 days
0.0
TCGA-XF-AAMX-01A
87 years, female, black or african american, stage:Stage III, dead, 206 days
0.0
TCGA-XF-A8HC-01A
79 years, male, asian, stage:Stage IV, dead, 200 days
0.0
TCGA-BT-A0S7-01A
75 years, male, white, stage:Stage III, dead, 200 days
0.0
TCGA-XF-A9SU-01A
74 years, female, white, stage:Stage IV, dead, 182 days
0.0
TCGA-ZF-AA4U-01A
70 years, male, white, stage:Stage III, dead, 262 days
0.0
TCGA-ZF-AA5N-01A
62 years, female, white, stage:Stage IV, dead, 168 days
0.0
TCGA-FD-A3SO-01A
68 years, male, white, stage:Stage IV, dead, 168 days
0.0
TCGA-FD-A5BV-01A
47 years, female, white, stage:Stage III, dead, 163 days
0.0
TCGA-DK-A3IK-01A
87 years, male, white, stage:Stage IV, dead, 146 days
0.0
TCGA-GU-A767-01A
81 years, male, white, stage:Stage IV, dead, 144 days
0.0
TCGA-FD-A6TH-01A
63 years, male, white, stage:Stage IV, dead, 131 days
0.0
TCGA-XF-A9ST-01A
68 years, male, white, stage:Stage III, dead, 128 days
0.0
TCGA-ZF-A9RE-01A
78 years, female, white, stage:Stage II, dead, 106 days
0.0
TCGA-XF-A9SJ-01A
83 years, male, white, stage:Stage IV, dead, 98 days
0.0
TCGA-ZF-AA4N-01A
74 years, male, white, stage:Stage II, dead, 88 days
0.0
TCGA-5N-A9KI-01A
76 years, female, white, stage:Stage III, dead, 76 days
0.0
TCGA-E7-A4XJ-01A
66 years, male, asian, stage:Stage II, dead, 68 days
0.0
TCGA-S5-A6DX-01A
83 years, male, white, stage:Stage IV, dead, 56 days
0.0
TCGA-CU-A5W6-01A
70 years, male, white, stage:Stage III, dead, 56 days
0.0
TCGA-GV-A40E-01A
75 years, male, white, stage:Stage II, dead, 261 days
0.0
TCGA-FJ-A871-01A
49 years, male, white, stage:Stage III, dead, 272 days
0.0
TCGA-BT-A2LB-01A
73 years, female, white, stage:Stage III, dead, 492 days
0.0
TCGA-XF-A9SV-01A
82 years, male, white, stage:Stage IV, dead, 388 days
0.0
TCGA-XF-A9SK-01A
65 years, male, white, stage:Stage IV, dead, 486 days
0.0
TCGA-FD-A43Y-01A
65 years, male, white, stage:Stage III, dead, 474 days
0.0
TCGA-BT-A20U-01A
70 years, female, white, stage:Stage III, dead, 455 days
0.0
TCGA-BT-A20T-01A
63 years, male, white, stage:Stage IV, dead, 453 days
0.0
TCGA-GV-A3JV-01A
66 years, male, white, stage:Stage IV, dead, 434 days
0.0
TCGA-XF-A9T8-01A
64 years, male, white, stage:Stage III, dead, 418 days
0.0
TCGA-YC-A9TC-01A
71 years, male, white, stage:Stage IV, dead, 20 days
0.0
TCGA-DK-A3IL-01A
79 years, female, white, stage:Stage IV, dead, 413 days
0.0
TCGA-CU-A72E-01A
76 years, male, white, stage:Stage IV, dead, 413 days
0.0
TCGA-ZF-A9RD-01A
75 years, female, white, stage:Stage IV, dead, 408 days
0.0
TCGA-FD-A62S-01A
60 years, female, black or african american, stage:Stage III, dead, 406 days
0.0
TCGA-BT-A0YX-01A
70 years, female, white, stage:Stage III, dead, 400 days
0.0
TCGA-CU-A0YN-01A
60 years, male, white, stage:Stage III, dead, 393 days
0.0
TCGA-FD-A3SS-01A
66 years, male, white, stage:Stage IV, dead, 391 days
0.0
TCGA-FD-A6TD-01A
77 years, male, white, stage:Stage III, dead, 386 days
0.0
TCGA-C4-A0EZ-01A
69 years, female, stage:Stage IV, dead, 273 days
0.0
TCGA-FJ-A3Z9-01A
72 years, male, white, stage:'--, dead, 385 days
0.0
TCGA-HQ-A5NE-01A
57 years, male, stage:Stage III, dead, 370 days
0.0
TCGA-BT-A20O-01A
75 years, male, white, stage:Stage III, dead, 370 days
0.0
TCGA-2F-A9KP-01A
66 years, male, white, stage:Stage IV, dead, 364 days
0.0
TCGA-XF-A9SW-01A
85 years, male, white, stage:Stage IV, dead, 362 days
0.0
TCGA-K4-A5RI-01A
67 years, female, white, stage:Stage III, dead, 356 days
0.0
TCGA-DK-AA75-01A
82 years, male, white, stage:Stage III, dead, 340 days
0.0
TCGA-GU-A42P-01A
72 years, male, white, stage:Stage IV, dead, 332 days
0.0
TCGA-FD-A5BT-01A
84 years, male, white, stage:Stage III, dead, 328 days
0.0
TCGA-GU-AATO-01A
75 years, male, white, stage:Stage IV, dead, 324 days
0.0
TCGA-4Z-AA86-01A
66 years, male, black or african american, stage:Stage IV, dead, 311 days
0.0
TCGA-BT-A3PK-01A
80 years, male, white, stage:Stage II, dead, 303 days
0.0
TCGA-FD-A6TI-01A
73 years, male, white, stage:Stage IV, dead, 294 days
0.0
TCGA-HQ-A5ND-01A
78 years, male, stage:Stage IV, dead, 274 days
0.0
TCGA-2F-A9KR-01A
59 years, female, stage:Stage III, dead, 3183 days
0.0
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UROTHELIAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.